Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI01937 Sapria himalayana HOM05D002808 ORTHO05D003135 3.0e-60 235.0 115 100.0
Potri.011G047100 Populus trichocarpa HOM05D002808 ORTHO05D003135 9.0e-33 143.7 117 64.1
Sabra11G0032700 Salix brachista HOM05D002808 ORTHO05D003135 1.5e-32 142.9 117 63.2
Manes.17G042200 Manihot esculenta HOM05D002808 ORTHO05D003135 2.1e-26 122.5 116 54.3
Duzib192G0379 Durio zibethinus HOM05D002808 ORTHO05D003135 2.1e-21 105.9 113 49.6
Thecc.06G193100 Theobroma cacao HOM05D002808 ORTHO05D003135 7.9e-21 104.0 112 50.0
TAR627G0014 Trochodendron aralioides HOM05D002808 ORTHO05D003135 1.9e-19 99.4 107 48.6
Sabra04G0023500 Salix brachista HOM05D002808 ORTHO05D003135 5.7e-19 97.8 75 65.3
Glyma.13G183300 Glycine max HOM05D002808 ORTHO05D003135 9.7e-19 97.1 118 42.4
Potri.004G038400 Populus trichocarpa HOM05D002808 ORTHO05D003135 1.6e-18 96.3 75 64.0
Ca_18516_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 2.2e-18 95.9 121 43.8
Gohir.A06G125900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 2.8e-18 95.5 111 43.2
Gohir.D06G129900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 2.8e-18 95.5 111 43.2
Gorai.010G151600 Gossypium raimondii HOM05D002808 ORTHO05D003135 2.8e-18 95.5 111 43.2
Lalb_Chr09g0327531 Lupinus albus HOM05D002808 ORTHO05D003135 1.1e-17 93.6 123 40.7
ClCG03G005720 Citrullus lanatus HOM05D002808 ORTHO05D003135 5.3e-17 91.3 119 42.9
Haze_06527 Corylus avellana HOM05D002808 ORTHO05D003135 5.3e-17 91.3 113 50.4
CsaV3_1G011990 Cucumis sativus L. HOM05D002808 ORTHO05D003135 5.3e-17 91.3 119 42.9
Cpa.g.sc530.4 Carica papaya HOM05D002808 ORTHO05D003135 6.9e-17 90.9 143 37.8
Glyma.07G193100 Glycine max HOM05D002808 ORTHO05D003135 6.9e-17 90.9 118 39.8
Duzib235G0556 Durio zibethinus HOM05D002808 ORTHO05D003135 9.0e-17 90.5 66 63.6
MELO3C002575.2 Cucumis melo HOM05D002808 ORTHO05D003135 1.5e-16 89.7 119 42.9
Lalb_Chr05g0218311 Lupinus albus HOM05D002808 ORTHO05D003135 2.6e-16 89.0 121 38.0
Psat7g111840 Pisum sativum HOM05D002808 ORTHO05D003135 3.4e-16 88.6 120 40.8
Dinv07522 Davidia involucrata HOM05D002808 ORTHO05D003135 4.5e-16 88.2 119 43.7
CiPaw.09G054500 Carya illinoinensis HOM05D002808 ORTHO05D003135 5.9e-16 87.8 119 43.7
BcaC09g49337 Brassica carinata HOM05D002808 ORTHO05D003135 1.3e-15 86.7 104 42.3
C01p37760 Brassica napus HOM05D002808 ORTHO05D003135 1.3e-15 86.7 104 42.3
COL.COLO4_22781 Corchorus olitorius HOM05D002808 ORTHO05D003135 1.7e-15 86.3 67 58.2
Haze_13133 Corylus avellana HOM05D002808 ORTHO05D003135 2.9e-15 85.5 73 53.4
A01p29880 Brassica napus HOM05D002808 ORTHO05D003135 3.8e-15 85.1 104 41.3
CiPaw.03G174400 Carya illinoinensis HOM05D002808 ORTHO05D003135 6.5e-15 84.3 72 52.8
CSS0000867 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 1.4e-14 83.2 111 41.4
Thhalv10023269m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 1.4e-14 83.2 75 53.3
QL05p038939 Quercus lobata HOM05D002808 ORTHO05D003135 1.4e-14 83.2 86 52.3
Medtr4g089110 Medicago truncatula HOM05D002808 ORTHO05D003135 1.9e-14 82.8 126 38.1
BolC1t03738H Brassica oleracea HOM05D002808 ORTHO05D003135 3.2e-14 82.0 111 39.6
TWI38G0056 Tripterygium wilfordii HOM05D002808 ORTHO05D003135 4.2e-14 81.6 91 46.2
BcaB04g20313 Brassica carinata HOM05D002808 ORTHO05D003135 5.5e-14 81.3 66 53.0
Nn2g14250 Nelumbo nucifera HOM05D002808 ORTHO05D003135 5.5e-14 81.3 103 40.8
RhsimUnG0043100 Rhododendron simsii HOM05D002808 ORTHO05D003135 5.5e-14 81.3 109 38.5
Atru.chr10.1958 Acer truncatum HOM05D002808 ORTHO05D003135 7.2e-14 80.9 131 40.5
Glyma.13G242700 Glycine max HOM05D002808 ORTHO05D003135 7.2e-14 80.9 114 38.6
BraA01t03116Z Brassica rapa HOM05D002808 ORTHO05D003135 9.4e-14 80.5 111 38.7
PSO675G4664 Papaver somniferum HOM05D002808 ORTHO05D003135 1.2e-13 80.1 111 36.0
PSO541G4209 Papaver somniferum HOM05D002808 ORTHO05D003135 2.1e-13 79.3 111 36.0
Gohir.D09G071400 Gossypium hirsutum HOM05D002808 ORTHO05D003135 2.7e-13 79.0 116 39.7
Phvul.002G225500 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 2.7e-13 79.0 113 39.8
DCAR_028116 Daucus carota HOM05D002808 ORTHO05D003135 3.6e-13 78.6 105 41.0
MD05G1320900 Malus domestica HOM05D002808 ORTHO05D003135 3.6e-13 78.6 108 44.4
BcaB07g31258 Brassica carinata HOM05D002808 ORTHO05D003135 4.6e-13 78.2 65 55.4
CARHR052240 Cardamine hirsuta HOM05D002808 ORTHO05D003135 4.6e-13 78.2 98 40.8
Lj6g0001777 Lotus japonicus HOM05D002808 ORTHO05D003135 4.6e-13 78.2 112 38.4
Oeu038236.1 Olea europaea HOM05D002808 ORTHO05D003135 4.6e-13 78.2 112 40.2
Dinv12909 Davidia involucrata HOM05D000973 ORTHO05D000652 6.1e-13 77.8 108 37.0
MD05G1320700 Malus domestica HOM05D002808 ORTHO05D003135 6.1e-13 77.8 108 44.4
Actinidia01909 Actinidia chinensis HOM05D002808 ORTHO05D003135 7.9e-13 77.4 122 38.5
Sed0005619 Sechium edule HOM05D002808 ORTHO05D003135 1.0e-12 77.0 119 37.0
vmacro03837 Vaccinium macrocarpon HOM05D002808 ORTHO05D003135 1.0e-12 77.0 109 36.7
QL08p038142 Quercus lobata HOM05D002808 ORTHO05D003135 1.4e-12 76.6 103 45.6
Carub.0002s0411 Capsella rubella HOM05D002808 ORTHO05D003135 2.3e-12 75.9 81 45.7
Cfa014582 Carpinus fangiana HOM05D002808 ORTHO05D003135 2.3e-12 75.9 73 50.7
Sp2g03440 Schrenkiella parvula HOM05D002808 ORTHO05D003135 2.3e-12 75.9 65 53.8
VMungo0251G2678 Vigna mungo HOM05D002808 ORTHO05D003135 2.3e-12 75.9 111 37.8
A09p16920 Brassica napus HOM05D002808 ORTHO05D003135 3.9e-12 75.1 65 53.8
BraA09t37329Z Brassica rapa HOM05D002808 ORTHO05D003135 3.9e-12 75.1 65 53.8
GSVIVG01007118001 Vitis vinifera HOM05D002808 ORTHO05D003135 3.9e-12 75.1 74 50.0
Aqoxy1G02592 Aquilegia oxysepala HOM05D002808 ORTHO05D003135 6.7e-12 74.3 106 39.6
TPR.G12045 Trifolium pratense HOM05D002808 ORTHO05D003135 8.8e-12 73.9 128 35.2
Psat1g206480 Pisum sativum HOM05D002808 ORTHO05D003135 1.1e-11 73.6 103 39.8
BolC9t54993H Brassica oleracea HOM05D002808 ORTHO05D003135 2.0e-11 72.8 98 39.8
Nn1g06645 Nelumbo nucifera HOM05D002808 ORTHO05D003135 2.0e-11 72.8 75 46.7
BcaC04g22302 Brassica carinata HOM05D002808 ORTHO05D003135 2.5e-11 72.4 75 48.0
C09p20960 Brassica napus HOM05D002808 ORTHO05D003135 2.5e-11 72.4 75 48.0
Sed0028146 Sechium edule HOM05D002808 ORTHO05D003135 2.5e-11 72.4 90 40.0
Gorai.011G025400 Gossypium raimondii HOM05D002808 ORTHO05D003135 3.3e-11 72.0 66 56.1
Manes.13G148600 Manihot esculenta HOM05D002808 ORTHO05D003135 3.3e-11 72.0 69 44.9
AL2G15350 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 5.7e-11 71.2 75 46.7
AT1G61080 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 5.7e-11 71.2 75 46.7
THA.LOC104809567 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 5.7e-11 71.2 65 56.9
TAR626G1215 Trochodendron aralioides HOM05D002808 ORTHO05D003135 5.7e-11 71.2 55 61.8
AL1G22050 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 7.4e-11 70.9 98 38.8
TAR626G1282 Trochodendron aralioides HOM05D002808 ORTHO05D003135 7.4e-11 70.9 48 68.8
Lj1A1209T61 Lonicera japonica HOM05D002808 ORTHO05D003135 9.7e-11 70.5 71 45.1
Nitab4.5_0001820g0170 Nicotiana tabacum HOM05D002808 ORTHO05D003135 9.7e-11 70.5 105 41.9
Cc02_g12840 Coffea canephora HOM05D002808 ORTHO05D003135 1.3e-10 70.1 72 44.4
Cc09_g10780 Coffea canephora HOM05D002808 ORTHO05D003135 1.3e-10 70.1 72 44.4
Thhalv10009997m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 1.3e-10 70.1 65 49.2
Nitab4.5_0006098g0010 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.3e-10 70.1 70 50.0
AT1G11070 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 1.7e-10 69.7 101 37.6
PGSC0003DMG400022806 Solanum tuberosum HOM05D002808 ORTHO05D003135 1.7e-10 69.7 96 38.5
CANSAT64G0853 Cannabis sativa HOM05D002808 ORTHO05D003135 2.2e-10 69.3 70 50.0
Peaxi162Scf00031g00821 Petunia axillaris HOM05D002808 ORTHO05D003135 2.2e-10 69.3 71 49.3
Phvul.006G188600 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 2.8e-10 68.9 108 38.0
CARHR011260 Cardamine hirsuta HOM05D002808 ORTHO05D003135 4.8e-10 68.2 95 37.9
Ciclev10017687m.g Citrus clementina HOM05D002808 ORTHO05D003135 4.8e-10 68.2 61 50.8
Solyc10g009140.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 4.8e-10 68.2 95 37.9
Sopen10g004920 Solanum pennellii HOM05D002808 ORTHO05D003135 4.8e-10 68.2 96 38.5
PGR042G1039 Punica granatum HOM05D002808 ORTHO05D003135 6.3e-10 67.8 74 45.9
Cc05_g06820 Coffea canephora HOM05D002808 ORTHO05D003135 8.2e-10 67.4 74 47.3
A06p07770 Brassica napus HOM05D002808 ORTHO05D003135 1.4e-09 66.6 79 44.3
GSVIVG01030542001 Vitis vinifera HOM05D002808 ORTHO05D003135 1.4e-09 66.6 87 39.1
arahy.Tifrunner.gnm1.ann1.2NE36Q Arachis hypogaea HOM05D002808 ORTHO05D003135 1.8e-09 66.2 151 27.8
SalBow8G4287 Salvia bowleyana HOM05D002808 ORTHO05D003135 1.8e-09 66.2 121 34.7
SalBow8G5370 Salvia bowleyana HOM05D002808 ORTHO05D003135 1.8e-09 66.2 121 34.7
Sp1g09760 Schrenkiella parvula HOM05D002808 ORTHO05D003135 1.8e-09 66.2 97 38.1
Migut.M01173 Erythranthe guttata HOM05D002808 ORTHO05D003135 2.4e-09 65.9 77 41.6
CSS0014200 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 3.1e-09 65.5 55 52.7
MD05G1320400 Malus domestica HOM05D002808 ORTHO05D003135 3.1e-09 65.5 73 46.6
Lj8A114G40 Lonicera japonica HOM05D002808 ORTHO05D003135 4.1e-09 65.1 57 47.4
PGR004G0378 Punica granatum HOM05D002808 ORTHO05D003135 4.1e-09 65.1 83 45.8
TPR.G36820 Trifolium pratense HOM05D002808 ORTHO05D003135 4.1e-09 65.1 84 42.9
arahy.Tifrunner.gnm1.ann1.V35IN5 Arachis hypogaea HOM05D002808 ORTHO05D003135 5.3e-09 64.7 152 28.3
Thhalv10029342m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 5.3e-09 64.7 65 47.7
Aa31LG9G9460 Aethionema arabicum HOM05D002808 ORTHO05D003135 6.9e-09 64.3 90 40.0
AL6G48560 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 6.9e-09 64.3 87 41.4
AT4G04980 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 9.1e-09 63.9 65 46.2
Carub.0006s3294 Capsella rubella HOM05D002808 ORTHO05D003135 9.1e-09 63.9 65 46.2
Lj4g0010618 Lotus japonicus HOM05D002808 ORTHO05D003135 9.1e-09 63.9 63 42.9
A09p64840 Brassica napus HOM05D002808 ORTHO05D003135 1.2e-08 63.5 64 45.3
BraA09t41811Z Brassica rapa HOM05D002808 ORTHO05D003135 1.2e-08 63.5 64 45.3
Sp6g03960 Schrenkiella parvula HOM05D002808 ORTHO05D003135 1.2e-08 63.5 65 46.2
arahy.Tifrunner.gnm1.ann1.KT8XA7 Arachis hypogaea HOM05D002808 ORTHO05D003135 1.5e-08 63.2 118 33.1
MSTRG.7317 Avicennia marina HOM05D002808 ORTHO05D003135 1.5e-08 63.2 116 34.5
BraA06t23978Z Brassica rapa HOM05D002808 ORTHO05D003135 1.5e-08 63.2 82 41.5
CAN.G1705.3 Capsicum annuum HOM05D002808 ORTHO05D003135 1.5e-08 63.2 102 37.3
Nitab4.5_0003341g0020 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.5e-08 63.2 97 39.2
arahy.Tifrunner.gnm1.ann1.29L0YD Arachis hypogaea HOM05D002808 ORTHO05D003135 2.0e-08 62.8 118 33.1
BcaB01g01857 Brassica carinata HOM05D002808 ORTHO05D003135 2.0e-08 62.8 65 44.6
BcaC04g21359 Brassica carinata HOM05D002808 ORTHO05D003135 2.0e-08 62.8 65 44.6
A09p25850 Brassica napus HOM05D002808 ORTHO05D003135 2.0e-08 62.8 65 44.6
C09p32730 Brassica napus HOM05D002808 ORTHO05D003135 2.0e-08 62.8 65 44.6
BolC9t56117H Brassica oleracea HOM05D002808 ORTHO05D003135 2.0e-08 62.8 65 44.6
BraA09t38155Z Brassica rapa HOM05D002808 ORTHO05D003135 2.0e-08 62.8 65 44.6
Rhsim04G0067100 Rhododendron simsii HOM05D002808 ORTHO05D003135 2.0e-08 62.8 86 31.4
C08p48350 Brassica napus HOM05D002808 ORTHO05D003135 2.6e-08 62.4 106 34.0
BolC8t52374H Brassica oleracea HOM05D002808 ORTHO05D003135 2.6e-08 62.4 106 34.0
Peaxi162Scf01021g00005 Petunia axillaris HOM05D002808 ORTHO05D003135 2.6e-08 62.4 73 45.2
Solyc02g078660.4 Solanum lycopersicum HOM05D002808 ORTHO05D003135 2.6e-08 62.4 84 38.1
Sopen02g023520 Solanum pennellii HOM05D002808 ORTHO05D003135 2.6e-08 62.4 84 38.1
Solyc03g006530.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 4.5e-08 61.6 75 44.0
PGSC0003DMG400026858 Solanum tuberosum HOM05D002808 ORTHO05D003135 4.5e-08 61.6 75 44.0
BcaC07g41790 Brassica carinata HOM05D002808 ORTHO05D003135 5.9e-08 61.2 106 34.0
CARHR252540 Cardamine hirsuta HOM05D002808 ORTHO05D003135 7.7e-08 60.8 96 37.5
Ca_00303_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 7.7e-08 60.8 62 46.8
BolC5t29676H Brassica oleracea HOM05D002808 ORTHO05D003135 1.0e-07 60.5 93 38.7
Lsat_1_v5_gn_7_19381 Lactuca sativa HOM05D002808 ORTHO05D003135 1.0e-07 60.5 82 35.4
AUR62014773 Chenopodium quinoa HOM05D002808 ORTHO05D003135 1.3e-07 60.1 58 48.3
AUR62016958 Chenopodium quinoa HOM05D002808 ORTHO05D003135 1.3e-07 60.1 58 48.3
Medtr2g013000 Medicago truncatula HOM05D002808 ORTHO05D003135 1.3e-07 60.1 62 43.5
Nitab4.5_0002066g0070 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.7e-07 59.7 61 44.3
THA.LOC104812819 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 2.2e-07 59.3 65 44.6
Aa31LG1G3840 Aethionema arabicum HOM05D002808 ORTHO05D003135 2.9e-07 58.9 88 37.5
C05p09360 Brassica napus HOM05D002808 ORTHO05D003135 5.0e-07 58.2 93 37.6
Sc17g0006360 Simmondsia chinensis HOM05D002808 ORTHO05D003135 5.0e-07 58.2 107 40.2
Aa31LG2G9520 Aethionema arabicum HOM05D002808 ORTHO05D003135 6.5e-07 57.8 65 44.6
HanXRQChr04g0124011 Helianthus annuus HOM05D002808 ORTHO05D003135 6.5e-07 57.8 56 44.6
VMungo0540G0036 Vigna mungo HOM05D002808 ORTHO05D003135 8.5e-07 57.4 62 41.9
ECA236G2337 Erigeron canadensis HOM05D002808 ORTHO05D003135 1.1e-06 57.0 57 43.9
Nn2g12560 Nelumbo nucifera HOM05D002808 ORTHO05D003135 1.1e-06 57.0 60 45.0
EL10Ac8g20311 Beta vulgaris HOM05D002808 ORTHO05D003135 1.4e-06 56.6 74 43.2
ATR0693G055 Amborella trichopoda HOM05D002808 ORTHO05D003135 5.5e-06 54.7 76 35.5
Hund21253 Selenicereus undatus HOM05D002808 ORTHO05D003135 9.4e-06 53.9 57 47.4


User provided reference genes

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