Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 8.5e-91 337.4 229 100.0
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 2.3e-11 73.6 41 78.0
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 3.0e-11 73.2 42 78.6
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 6.6e-11 72.0 42 76.2
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 1.9e-10 70.5 42 76.2
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.9e-10 70.5 42 76.2
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.9e-10 70.5 42 76.2
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 1.9e-10 70.5 42 76.2
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 2.5e-10 70.1 42 71.4
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 3.3e-10 69.7 44 70.5
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 5.6e-10 68.9 42 71.4
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 7.3e-10 68.6 41 75.6
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 9.6e-10 68.2 41 73.2
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 1.6e-09 67.4 41 75.6
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 2.1e-09 67.0 41 70.7
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 2.8e-09 66.6 41 70.7
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 3.6e-09 66.2 87 72.4
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 3.6e-09 66.2 40 72.5
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 4.8e-09 65.9 42 69.0
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 4.8e-09 65.9 40 75.0
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 6.2e-09 65.5 44 68.2
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 6.2e-09 65.5 69 84.1
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 6.2e-09 65.5 40 70.0
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 1.1e-08 64.7 73 78.1
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 1.4e-08 64.3 41 70.7
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 1.4e-08 64.3 41 70.7
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 1.4e-08 64.3 42 69.0
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 1.4e-08 64.3 72 79.2
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 1.8e-08 63.9 44 63.6
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 1.8e-08 63.9 42 69.0
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.8e-08 63.9 44 61.4
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.8e-08 63.9 44 61.4
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 1.8e-08 63.9 44 61.4
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.8e-08 63.9 39 74.4
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 1.8e-08 63.9 40 72.5
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 1.8e-08 63.9 44 68.2
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 2.4e-08 63.5 139 37.4
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 3.1e-08 63.2 41 73.2
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 3.1e-08 63.2 40 72.5
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 3.1e-08 63.2 42 69.0
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 3.1e-08 63.2 41 70.7
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 3.1e-08 63.2 70 80.0
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 4.0e-08 62.8 42 66.7
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 4.0e-08 62.8 44 63.6
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 4.0e-08 62.8 41 70.7
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 5.3e-08 62.4 40 67.5
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 6.9e-08 62.0 39 71.8
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 6.9e-08 62.0 39 71.8
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 9.0e-08 61.6 40 70.0
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 9.0e-08 61.6 41 68.3
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 9.0e-08 61.6 40 67.5
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 1.2e-07 61.2 41 65.9
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 1.5e-07 60.8 39 71.8
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 2.6e-07 60.1 44 63.6
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 2.6e-07 60.1 40 67.5
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 3.4e-07 59.7 38 71.1
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 5.8e-07 58.9 41 61.0
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 5.8e-07 58.9 40 65.0
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 5.8e-07 58.9 40 62.5
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 7.6e-07 58.5 40 67.5
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 7.6e-07 58.5 41 68.3
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 7.6e-07 58.5 36 69.4
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 7.6e-07 58.5 40 65.0
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 9.9e-07 58.2 41 65.9
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 9.9e-07 58.2 40 65.0
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.3e-06 57.8 41 63.4
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.3e-06 57.8 40 62.5
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 1.3e-06 57.8 42 64.3
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 1.3e-06 57.8 41 65.9
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 1.3e-06 57.8 39 69.2
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 1.7e-06 57.4 39 64.1
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 1.7e-06 57.4 41 61.0
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 2.2e-06 57.0 37 67.6
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 2.2e-06 57.0 41 65.9
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 4.9e-06 55.8 40 60.0
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 8.4e-06 55.1 39 66.7
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 8.4e-06 55.1 40 57.5
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 8.4e-06 55.1 39 64.1


User provided reference genes

Program Settings