Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 9.5e-107 390.2 198 100.0
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 6.3e-34 148.3 163 59.5
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 8.2e-34 147.9 163 58.9
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.8e-33 146.7 163 58.9
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.1e-33 146.0 163 58.9
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 3.1e-33 146.0 163 58.9
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 3.1e-33 146.0 163 58.9
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.1e-33 146.0 163 58.9
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.1e-33 146.0 163 58.9
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.1e-33 146.0 163 58.9
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 3.1e-33 146.0 163 58.9
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 4.1e-33 145.6 163 59.5
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 7.0e-33 144.8 170 57.1
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 7.0e-33 144.8 170 57.1
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 7.0e-33 144.8 170 57.1
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 7.0e-33 144.8 170 57.1
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 7.0e-33 144.8 170 57.1
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 7.0e-33 144.8 170 57.1
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.2e-32 144.1 161 59.0
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.0e-32 143.3 165 57.6
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 2.0e-32 143.3 170 57.1
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.5e-32 142.5 160 58.8
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.5e-32 142.5 168 57.1
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.5e-32 142.5 168 57.1
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 4.5e-32 142.1 168 57.1
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 5.9e-32 141.7 170 56.5
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 5.9e-32 141.7 170 56.5
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 7.7e-32 141.4 170 56.5
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 7.7e-32 141.4 163 57.7
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-31 140.6 170 56.5
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-31 140.6 170 56.5
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-31 140.6 170 56.5
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-31 140.6 170 55.9
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 5.0e-31 138.7 168 56.0
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 6.5e-31 138.3 170 55.3
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 8.5e-31 137.9 163 57.1
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.5e-30 136.3 160 58.1
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 2.5e-30 136.3 168 56.0
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 4.2e-30 135.6 172 54.7
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.5e-30 135.2 168 55.4
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 6.1e-29 131.7 166 54.8
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 6.1e-29 131.7 166 54.8
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.2e-26 123.2 160 55.0
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 2.9e-23 112.8 162 50.0
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 7.2e-22 108.2 170 48.2
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 7.2e-22 108.2 132 59.1
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 6.1e-21 105.1 165 46.7
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 6.1e-21 105.1 108 61.1
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 8.0e-21 104.8 110 60.9
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 8.0e-21 104.8 163 49.7
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.3e-20 103.2 108 61.1
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 2.3e-20 103.2 108 61.1
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 4.0e-20 102.4 108 60.2
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 6.8e-20 101.7 171 46.2
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.4e-19 99.4 108 59.3
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 3.4e-19 99.4 108 59.3
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 3.4e-19 99.4 108 59.3
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.1e-17 92.4 146 52.1
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.1e-17 92.4 139 48.9
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.7e-16 89.7 155 49.7
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.0e-15 85.5 161 43.5
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 7.2e-14 81.6 163 36.8
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 3.0e-12 76.3 65 64.6
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 4.0e-12 75.9 95 55.8
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.0e-12 75.9 65 63.1
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.0e-12 75.9 65 63.1
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.0e-12 75.9 65 63.1
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 4.0e-12 75.9 65 63.1
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.5e-11 73.9 95 55.8
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.0e-11 73.6 167 40.1
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 5.7e-11 72.0 80 50.0
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 7.5e-11 71.6 92 56.5
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 2.8e-10 69.7 65 60.0
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 2.4e-09 66.6 108 47.2
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 2.4e-09 66.6 104 47.1
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.2e-08 64.3 112 50.0
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-08 64.3 57 59.6
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 2.7e-08 63.2 100 50.0
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 1.0e-07 61.2 68 51.5
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 8.6e-07 58.2 91 48.4
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-06 57.8 33 81.8
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-06 57.4 86 53.5
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 2.5e-06 56.6 51 62.7
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.5e-06 56.6 51 62.7
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 4.3e-06 55.8 101 47.5
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 9.5e-06 54.7 111 39.6
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 9.5e-06 54.7 149 36.2


User provided reference genes

Program Settings