Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI01159 Sapria himalayana HOM05D003666 ORTHO05D004770 3.7e-35 151.0 76 100.0
SHI21047 Sapria himalayana HOM05D003666 ORTHO05D004770 1.1e-10 69.7 115 43.5
Aa31csc553G50 Aethionema arabicum HOM05D003666 ORTHO05D004770 1.3e-08 62.8 55 61.8
AL3G44310 Arabidopsis lyrata HOM05D003666 ORTHO05D004770 1.3e-08 62.8 55 61.8
SHI36045 Sapria himalayana HOM05D003666 ORTHO05D004770 1.3e-08 62.8 44 70.5
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 1.3e-08 62.8 55 61.8
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 1.7e-08 62.4 50 62.0
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 1.7e-08 62.4 50 62.0
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 3.0e-08 61.6 55 60.0
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 3.0e-08 61.6 55 60.0
Medtr0082s0060 Medicago truncatula HOM05D003666 ORTHO05D004770 3.0e-08 61.6 55 60.0
Hma1.2p1_0257F.1_g103600 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 5.1e-08 60.8 55 60.0
Lalb_Chr00c24g0407361 Lupinus albus HOM05D003666 ORTHO05D004770 5.1e-08 60.8 55 60.0
Lalb_Chr01g0010981 Lupinus albus HOM05D003666 ORTHO05D004770 5.1e-08 60.8 55 60.0
Gohir.D09G016300 Gossypium hirsutum HOM05D003666 ORTHO05D004770 1.1e-07 59.7 46 63.0
Nitab4.5_0000172g0090 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.1e-07 59.7 54 57.4
Potri.007G061921 Populus trichocarpa HOM05D003666 ORTHO05D004770 1.1e-07 59.7 56 58.9
RcHm_v2.0_MTg0498651 Rosa chinensis HOM05D003666 ORTHO05D004770 1.1e-07 59.7 55 58.2
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 1.5e-07 59.3 50 62.0
Lj2A1228G69 Lonicera japonica HOM05D003666 ORTHO05D004770 1.5e-07 59.3 55 58.2
Lalb_Chr06g0172221 Lupinus albus HOM05D003666 ORTHO05D004770 1.5e-07 59.3 45 68.9
Nn1g09940 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.5e-07 59.3 55 58.2
Peaxi162Scf00530g00005 Petunia axillaris HOM05D003666 ORTHO05D004770 1.5e-07 59.3 55 58.2
Peaxi162Scf01767g00002 Petunia axillaris HOM05D003666 ORTHO05D004770 1.5e-07 59.3 55 58.2
Solyc00g013180.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.5e-07 59.3 55 58.2
Sopen11g018270 Solanum pennellii HOM05D003666 ORTHO05D004770 1.5e-07 59.3 55 58.2
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 2.5e-07 58.5 55 58.2
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 2.5e-07 58.5 55 58.2
AUR62042334 Chenopodium quinoa HOM05D003666 ORTHO05D004770 2.5e-07 58.5 55 58.2
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.5e-07 58.5 55 54.5
arahy.Tifrunner.gnm1.ann1.DQZY30 Arachis hypogaea HOM05D003666 ORTHO05D004770 3.3e-07 58.2 55 58.2
arahy.Tifrunner.gnm1.ann1.G61VPX Arachis hypogaea HOM05D003666 ORTHO05D004770 3.3e-07 58.2 55 58.2
CAN.G1001.36 Capsicum annuum HOM05D003666 ORTHO05D004770 4.3e-07 57.8 55 56.4
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 4.3e-07 57.8 54 57.4
Solyc00g500187.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.3e-07 57.8 54 57.4
Solyc00g500251.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.3e-07 57.8 54 57.4
CAN.G65.28 Capsicum annuum HOM05D003666 ORTHO05D004770 9.6e-07 56.6 55 56.4
Nn1g10170 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.2e-06 56.2 56 55.4
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 1.6e-06 55.8 50 58.0
Lalb_Chr06g0172341 Lupinus albus HOM05D003666 ORTHO05D004770 1.6e-06 55.8 42 69.0
Nitab4.5_0006085g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.6e-06 55.8 54 53.7
unitig_87.g28023 Utricularia gibba HOM05D003666 ORTHO05D004770 1.6e-06 55.8 54 55.6
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 2.1e-06 55.5 56 53.6
CAN.G1.7 Capsicum annuum HOM05D003666 ORTHO05D004770 3.6e-06 54.7 55 52.7
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 3.6e-06 54.7 56 55.4
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 3.6e-06 54.7 56 55.4


User provided reference genes

Program Settings