Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI01002 Sapria himalayana HOM05D002920 ORTHO05D003118 3.3e-267 924.5 470 100.0
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 9.0e-47 192.2 333 34.5
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 4.5e-46 189.9 333 34.8
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 6.5e-45 186.0 377 34.5
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 2.5e-44 184.1 346 34.7
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 3.2e-44 183.7 368 35.3
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 1.2e-43 181.8 348 34.8
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.1e-43 181.0 336 36.3
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 2.7e-43 180.6 331 37.2
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 6.1e-43 179.5 336 36.6
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 6.1e-43 179.5 348 34.5
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 7.9e-43 179.1 336 34.5
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 1.3e-42 178.3 357 34.7
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 2.3e-42 177.6 333 35.4
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 2.3e-42 177.6 339 35.7
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 3.0e-42 177.2 338 36.7
Solyc04g076550.3 Solanum lycopersicum HOM05D002920 ORTHO05D003118 5.1e-42 176.4 338 36.7
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 6.7e-42 176.0 345 34.2
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 6.7e-42 176.0 337 34.7
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 1.1e-41 175.3 338 33.1
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 1.5e-41 174.9 329 35.3
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 1.5e-41 174.9 339 36.3
QL09p018218 Quercus lobata HOM05D002920 ORTHO05D003118 2.5e-41 174.1 330 34.8
Atru.chr13.988 Acer truncatum HOM05D002920 ORTHO05D003118 3.3e-41 173.7 344 34.3
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 4.3e-41 173.3 358 35.2
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 7.4e-41 172.6 339 35.1
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 9.7e-41 172.2 346 34.7
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 1.6e-40 171.4 345 34.2
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 8.2e-40 169.1 343 35.0
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 1.4e-39 168.3 355 32.4
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 1.4e-39 168.3 347 33.7
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 1.8e-39 167.9 375 32.0
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 1.8e-39 167.9 329 35.3
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 1.8e-39 167.9 346 34.1
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 4.1e-39 166.8 356 33.7
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 4.1e-39 166.8 341 32.6
vmacro04640 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 4.1e-39 166.8 326 33.7
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 5.3e-39 166.4 339 33.6
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 9.0e-39 165.6 330 34.8
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 1.2e-38 165.2 340 32.9
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 1.2e-38 165.2 356 32.6
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 1.2e-38 165.2 356 32.9
C01p35910 Brassica napus HOM05D002920 ORTHO05D003118 2.0e-38 164.5 356 32.9
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 2.0e-38 164.5 356 32.9
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 2.0e-38 164.5 339 33.0
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 3.4e-38 163.7 347 33.1
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 4.5e-38 163.3 356 32.6
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 1.0e-37 162.2 362 32.9
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 1.0e-37 162.2 362 32.9
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 1.0e-37 162.2 356 32.6
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 1.3e-37 161.8 356 32.3
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 1.7e-37 161.4 341 29.9
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 1.7e-37 161.4 327 32.4
A09p18500 Brassica napus HOM05D002920 ORTHO05D003118 2.2e-37 161.0 307 34.2
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 2.2e-37 161.0 307 34.2
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 2.2e-37 161.0 307 34.2
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 2.2e-37 161.0 307 34.2
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 2.2e-37 161.0 343 34.1
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 2.2e-37 161.0 329 31.3
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 3.8e-37 160.2 346 32.7
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 8.5e-37 159.1 331 33.2
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 1.1e-36 158.7 351 31.1
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 1.1e-36 158.7 342 31.6
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 1.4e-36 158.3 284 34.5
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 1.4e-36 158.3 334 32.6
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.4e-36 158.3 341 30.5
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 1.4e-36 158.3 346 33.2
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 1.9e-36 157.9 338 32.8
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 2.5e-36 157.5 329 31.6
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 2.5e-36 157.5 327 31.5
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 4.2e-36 156.8 330 33.9
AUR62019108 Chenopodium quinoa HOM05D002920 ORTHO05D003118 5.5e-36 156.4 392 31.9
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 7.2e-36 156.0 335 33.1
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 9.4e-36 155.6 327 31.8
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 1.6e-35 154.8 333 32.1
CDE07G0230 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 2.1e-35 154.5 355 32.4
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 3.6e-35 153.7 334 32.0
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 4.6e-35 153.3 327 31.5
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 4.6e-35 153.3 327 31.5
DCAR_024958 Daucus carota HOM05D002920 ORTHO05D003118 7.9e-35 152.5 333 33.0
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 1.0e-34 152.1 352 31.8
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 1.0e-34 152.1 383 31.3
Haze_22482 Corylus avellana HOM05D002920 ORTHO05D003118 1.0e-34 152.1 330 31.8
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 1.4e-34 151.8 378 29.9
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 2.3e-34 151.0 337 31.5
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 3.0e-34 150.6 332 30.4
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 6.7e-34 149.4 330 31.2
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 6.7e-34 149.4 333 31.2
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 1.1e-33 148.7 340 31.5
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 1.1e-33 148.7 333 31.2
CAN.G1104.6 Capsicum annuum HOM05D002920 ORTHO05D003118 4.3e-33 146.7 390 29.5
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 5.7e-33 146.4 336 30.1
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 7.4e-33 146.0 313 32.6
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 7.4e-33 146.0 348 31.0
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 9.7e-33 145.6 313 32.3
FAN08G1437 Fragaria x ananassa HOM05D002920 ORTHO05D003118 9.7e-33 145.6 313 32.3
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 9.7e-33 145.6 313 32.3
MD08G1202500 Malus domestica HOM05D002920 ORTHO05D003118 1.7e-32 144.8 336 29.2
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 4.8e-32 143.3 336 31.2
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 4.8e-32 143.3 352 31.0
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.1e-31 142.1 316 33.2
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 1.4e-31 141.7 340 31.2
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 3.1e-31 140.6 339 29.8
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 5.3e-31 139.8 268 35.1
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 1.5e-30 138.3 354 29.4
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 2.6e-30 137.5 385 29.4
Psat2g064080 Pisum sativum HOM05D002920 ORTHO05D003118 1.7e-29 134.8 336 30.4
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 1.7e-29 134.8 332 30.1
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 1.1e-28 132.1 337 30.3
RcHm_v2.0_Chr7g0235031 Rosa chinensis HOM05D002920 ORTHO05D003118 4.7e-27 126.7 281 33.1
HPP92_024863 Vanilla planifolia HOM05D002920 ORTHO05D003118 4.7e-27 126.7 327 29.1
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 1.4e-26 125.2 285 32.3
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 8.8e-26 122.5 345 27.8
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.5e-25 121.7 337 31.5
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 1.7e-24 118.2 348 30.5
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 2.8e-24 117.5 358 28.5
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 3.7e-24 117.1 349 27.8
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 2.4e-23 114.4 355 28.5
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 2.6e-22 110.9 169 36.1
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 2.6e-22 110.9 351 25.9
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.1e-20 105.5 163 36.2
Actinidia29660 Actinidia chinensis HOM05D002920 ORTHO05D003118 1.9e-20 104.8 128 49.2
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 1.9e-20 104.8 339 25.4
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 4.2e-20 103.6 340 25.6
Glyma.04G096666 Glycine max HOM05D002920 ORTHO05D003118 4.2e-20 103.6 101 57.4
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 5.5e-20 103.2 331 25.7
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 5.5e-20 103.2 331 25.7
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 7.2e-20 102.8 334 28.1
Cpa.g.sc21.38 Carica papaya HOM05D002920 ORTHO05D003118 7.2e-20 102.8 165 35.8
vmacro21356 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 2.1e-19 101.3 91 58.2
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 4.7e-19 100.1 339 27.4
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 8.0e-19 99.4 332 28.3
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 2.3e-18 97.8 340 26.2
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 2.3e-18 97.8 90 55.6
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 9.7e-17 92.4 284 26.8
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 1.7e-16 91.7 339 26.8
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 1.7e-16 91.7 336 25.6
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 5.3e-15 86.7 341 25.8
Lsat_1_v5_gn_9_80721 Lactuca sativa HOM05D002920 ORTHO05D003118 7.0e-15 86.3 99 55.6
SEGI_25281 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 1.0e-13 82.4 111 45.0
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 3.8e-13 80.5 339 24.8
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 5.0e-13 80.1 339 25.1
vmacro21355 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 8.5e-13 79.3 160 28.8
BcaC02g08647 Brassica carinata HOM05D002920 ORTHO05D003118 1.9e-12 78.2 332 25.0
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 1.2e-11 75.5 115 33.0
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 2.1e-11 74.7 341 23.8
Psat2g086080 Pisum sativum HOM05D002920 ORTHO05D003118 3.6e-11 73.9 90 47.8
HPP92_018504 Vanilla planifolia HOM05D002920 ORTHO05D003118 9.8e-09 65.9 93 40.9
MD08G1208100 Malus domestica HOM05D002920 ORTHO05D003118 1.7e-08 65.1 65 60.0
Os03g0681201 Oryza sativa ssp. japonica HOM05D002920 ORTHO05D003118 6.3e-08 63.2 47 70.2
Hund17266 Selenicereus undatus HOM05D002920 ORTHO05D003118 1.2e-06 58.9 74 48.6


User provided reference genes

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