Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.0e-291 1005.0 494 100.0
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.0e-174 616.3 461 66.2
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.7e-173 613.2 460 67.4
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.7e-165 586.6 464 63.6
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 5.0e-165 585.1 463 62.9
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.1e-164 583.9 542 57.4
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.9e-164 583.2 461 64.0
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 5.6e-164 581.6 456 62.9
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 9.5e-164 580.9 463 63.3
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 9.5e-164 580.9 456 64.0
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.6e-163 580.1 458 63.3
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 2.1e-163 579.7 454 63.7
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 3.6e-163 578.9 456 62.5
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 6.1e-163 578.2 456 63.6
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.0e-162 577.4 456 63.4
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.8e-162 576.6 461 62.7
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 3.0e-162 575.9 461 61.8
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 6.8e-162 574.7 458 62.4
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 8.9e-162 574.3 456 63.2
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 3.4e-161 572.4 461 62.0
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 4.4e-161 572.0 461 62.0
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 3.7e-160 568.9 469 58.6
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 2.4e-159 566.2 461 61.0
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 5.4e-159 565.1 467 61.0
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.4e-159 565.1 456 61.4
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.4e-159 565.1 456 61.6
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 9.2e-159 564.3 454 61.0
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 3.5e-158 562.4 461 61.8
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 4.6e-158 562.0 462 60.4
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 6.0e-158 561.6 462 60.4
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.0e-157 560.8 456 60.7
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.3e-157 560.5 485 59.2
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 1.3e-157 560.5 461 60.7
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 1.3e-157 560.5 460 60.9
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.7e-157 560.1 455 60.9
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 3.0e-157 559.3 455 60.7
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 3.9e-157 558.9 455 60.9
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 3.9e-157 558.9 455 60.7
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 3.9e-157 558.9 455 60.7
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 8.6e-157 557.8 455 60.7
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 8.6e-157 557.8 455 60.7
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 1.9e-156 556.6 485 57.7
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.9e-156 556.6 459 59.9
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.5e-156 556.2 485 57.9
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-156 555.8 464 60.3
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 4.3e-156 555.4 456 61.2
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 5.6e-156 555.1 460 60.7
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 9.5e-156 554.3 485 57.5
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.6e-155 553.5 454 59.7
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 1.6e-155 553.5 461 59.4
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 2.8e-155 552.7 461 59.9
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 3.6e-155 552.4 454 59.7
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 4.7e-155 552.0 522 54.6
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 6.2e-155 551.6 460 60.9
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 3.1e-154 549.3 440 64.1
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 5.2e-154 548.5 461 59.4
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 6.8e-154 548.1 462 59.1
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 8.9e-154 547.7 475 58.7
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.2e-153 547.4 455 58.7
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.6e-153 546.2 474 57.8
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 5.8e-153 545.0 461 58.6
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 5.8e-153 545.0 461 59.0
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 7.5e-153 544.7 457 60.6
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.8e-153 544.3 460 60.0
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.3e-152 543.9 475 58.3
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.7e-152 543.5 447 60.4
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 2.2e-152 543.1 444 59.9
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 2.2e-152 543.1 457 60.0
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.9e-152 542.7 474 58.0
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 2.9e-152 542.7 475 58.3
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 3.7e-152 542.3 456 60.5
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 6.4e-152 541.6 457 59.7
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.9e-151 540.0 456 59.4
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 4.1e-151 538.9 449 58.8
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 4.1e-151 538.9 465 59.4
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 7.0e-151 538.1 456 59.2
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 2.7e-150 536.2 456 59.4
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 3.5e-150 535.8 446 60.1
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 4.6e-150 535.4 468 57.7
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 2.3e-149 533.1 466 57.7
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 2.3e-149 533.1 458 59.6
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.0e-149 532.7 455 58.5
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.0e-149 532.7 455 58.5
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 2.5e-148 529.6 461 58.4
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 4.3e-148 528.9 456 58.6
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.8e-146 523.5 463 56.8
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.8e-146 523.5 463 57.2
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 6.8e-146 521.5 459 57.3
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.5e-145 520.4 474 56.8
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 2.6e-145 519.6 468 56.0
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.7e-144 515.8 463 56.4
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 6.4e-144 515.0 458 55.7
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 1.1e-143 514.2 487 54.8
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.1e-143 514.2 468 56.2
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 5.4e-143 511.9 557 49.9
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.6e-142 508.8 435 58.4
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 1.1e-140 504.2 433 59.1
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 4.3e-140 502.3 457 56.7
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 5.6e-140 501.9 520 51.5
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 3.6e-139 499.2 435 57.9
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 4.7e-139 498.8 513 51.9
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.8e-138 496.9 411 59.6
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 3.8e-128 462.6 462 51.1
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.1e-126 456.8 439 55.4
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 9.3e-119 431.4 356 62.4
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.9e-117 426.0 411 53.5
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 8.7e-117 424.9 367 58.0
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.1e-115 420.2 446 50.0
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 6.2e-115 418.7 329 63.8
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 3.4e-113 412.9 454 48.9
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 7.4e-108 395.2 478 44.6
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 2.6e-105 386.7 385 54.8
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.9e-103 380.6 455 47.3
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.1e-98 364.8 452 44.7
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.5e-89 332.8 499 39.7
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.2e-87 326.6 343 50.1
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 3.6e-86 323.2 387 48.3
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.5e-79 300.4 278 55.0
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 6.7e-77 292.4 324 50.0
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 2.4e-66 257.3 466 35.8
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.8e-61 241.1 392 38.5
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 6.3e-59 232.6 434 36.4
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 5.4e-58 229.6 185 59.5
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 4.5e-57 226.5 460 33.5
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.9e-55 221.1 363 36.1
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 8.3e-51 205.7 169 59.8
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 2.0e-49 201.1 484 30.4
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.3e-39 167.2 154 55.8
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.5e-36 158.3 204 41.7
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.2e-30 138.7 100 65.0
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 3.6e-30 137.1 244 36.9
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-26 124.8 92 66.3
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.5e-23 114.4 334 26.3
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 1.6e-22 111.7 72 75.0
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-13 82.0 62 62.9
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.2e-12 79.0 59 69.5
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 7.8e-09 66.2 49 61.2
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 1.0e-08 65.9 39 69.2


User provided reference genes

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