Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00864 Sapria himalayana HOM05D000827 ORTHO05D001576 4.5e-64 247.7 117 100.0
SHI41620 Sapria himalayana HOM05D012851 ORTHO05D001576 7.7e-40 167.2 95 83.2
SHI44156 Sapria himalayana HOM05D000827 ORTHO05D001576 1.8e-28 129.4 80 76.2
SHI43101 Sapria himalayana HOM05D000827 ORTHO05D001576 8.3e-26 120.6 58 94.8
SHI40001 Sapria himalayana HOM05D000827 ORTHO05D001576 2.4e-25 119.0 70 78.6
SHI20172 Sapria himalayana HOM05D001397 ORTHO05D001300 6.6e-23 110.9 58 89.7
SHI05501 Sapria himalayana HOM05D000827 ORTHO05D001576 3.9e-15 85.1 96 53.1
SHI47665 Sapria himalayana HOM05D012851 ORTHO05D001576 6.8e-12 74.3 97 47.4
Nitab4.5_0003726g0090 Nicotiana tabacum HOM05D000827 ORTHO05D001576 1.2e-11 73.6 105 41.9
Solyc01g108290.3 Solanum lycopersicum HOM05D000827 ORTHO05D001576 2.0e-11 72.8 106 40.6
Sopen01g050510 Solanum pennellii HOM05D000827 ORTHO05D001576 3.4e-11 72.0 105 41.9
PGSC0003DMG400025800 Solanum tuberosum HOM05D000827 ORTHO05D001576 4.4e-11 71.6 106 40.6
Nitab4.5_0002462g0060 Nicotiana tabacum HOM05D000827 ORTHO05D001576 1.3e-10 70.1 111 38.7
SHI37809 Sapria himalayana HOM05D000827 ORTHO05D001576 1.3e-10 70.1 49 63.3
CAN.G179.44 Capsicum annuum HOM05D000827 ORTHO05D001576 1.7e-10 69.7 106 41.5
Cpa.g.sc62.52 Carica papaya HOM05D000827 ORTHO05D001576 1.7e-10 69.7 48 64.6
FAN27G2733 Fragaria x ananassa HOM05D000827 ORTHO05D001576 1.7e-10 69.7 74 47.3
Oeu013673.1 Olea europaea HOM05D000827 ORTHO05D001576 1.7e-10 69.7 53 64.2
HanXRQChr10g0303211 Helianthus annuus HOM05D000827 ORTHO05D001576 2.2e-10 69.3 71 47.9
SHI34513 Sapria himalayana HOM05D012851 ORTHO05D368450 2.2e-10 69.3 36 91.7
FAN20G0485 Fragaria x ananassa HOM05D000827 ORTHO05D001576 2.9e-10 68.9 74 47.3
TAR376G0084 Trochodendron aralioides HOM05D000827 ORTHO05D001576 3.7e-10 68.6 46 67.4
CAN.G322.36 Capsicum annuum HOM05D000827 ORTHO05D001576 4.9e-10 68.2 106 40.6
PGR142G2446 Punica granatum HOM05D000827 ORTHO05D001576 4.9e-10 68.2 47 63.8
FvH4_2g06890 Fragaria vesca HOM05D000827 ORTHO05D001576 8.3e-10 67.4 74 45.9
FAN15G1827 Fragaria x ananassa HOM05D000827 ORTHO05D001576 8.3e-10 67.4 74 45.9
FAN24G0901 Fragaria x ananassa HOM05D000827 ORTHO05D001576 8.3e-10 67.4 74 45.9
Os03g0764450 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001576 1.1e-09 67.0 64 51.6
Carub.0001s3871 Capsella rubella HOM05D000827 ORTHO05D001576 1.4e-09 66.6 47 59.6
AL1G56870 Arabidopsis lyrata HOM05D000827 ORTHO05D001576 2.4e-09 65.9 47 57.4
A05p30540 Brassica napus HOM05D000827 ORTHO05D001576 2.4e-09 65.9 73 41.1
COL.COLO4_11723 Corchorus olitorius HOM05D000827 ORTHO05D001576 2.4e-09 65.9 83 41.0
Sp1g36380 Schrenkiella parvula HOM05D000827 ORTHO05D001576 2.4e-09 65.9 46 63.0
Actinidia12228 Actinidia chinensis HOM05D000827 ORTHO05D001576 3.2e-09 65.5 58 51.7
Eucgr.I01179 Eucalyptus grandis HOM05D000827 ORTHO05D001576 3.2e-09 65.5 44 61.4
HanXRQChr12g0378341 Helianthus annuus HOM05D000827 ORTHO05D001576 3.2e-09 65.5 51 58.8
Lsat_1_v5_gn_3_92820 Lactuca sativa HOM05D000827 ORTHO05D001576 3.2e-09 65.5 58 51.7
Lsat_1_v5_gn_5_113480 Lactuca sativa HOM05D000827 ORTHO05D001576 3.2e-09 65.5 60 56.7
BcaB06g25962 Brassica carinata HOM05D000827 ORTHO05D001576 4.1e-09 65.1 47 55.3
BcaC05g28535 Brassica carinata HOM05D000827 ORTHO05D001576 4.1e-09 65.1 47 55.3
C05p46160 Brassica napus HOM05D000827 ORTHO05D001576 4.1e-09 65.1 47 55.3
BolC5t33344H Brassica oleracea HOM05D000827 ORTHO05D001576 4.1e-09 65.1 47 55.3
BraA05t21892Z Brassica rapa HOM05D000827 ORTHO05D001576 4.1e-09 65.1 47 55.3
Duzib132G0316 Durio zibethinus HOM05D000827 ORTHO05D001576 4.1e-09 65.1 80 42.5
Sabra09G0081500 Salix brachista HOM05D000827 ORTHO05D001576 4.1e-09 65.1 48 60.4
Actinidia30858 Actinidia chinensis HOM05D000827 ORTHO05D001576 5.4e-09 64.7 58 51.7
MSTRG.23778 Avicennia marina HOM05D000827 ORTHO05D001576 5.4e-09 64.7 45 62.2
CSS0024154 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 5.4e-09 64.7 71 46.5
CSS0046507 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 5.4e-09 64.7 71 46.5
Manes.15G143600 Manihot esculenta HOM05D000827 ORTHO05D001576 5.4e-09 64.7 51 58.8
TAR628G1648 Trochodendron aralioides HOM05D000827 ORTHO05D001576 5.4e-09 64.7 42 69.0
Peaxi162Scf00016g10154 Petunia axillaris HOM05D000827 ORTHO05D001576 7.1e-09 64.3 71 47.9
Thecc.02G095500 Theobroma cacao HOM05D000827 ORTHO05D001576 7.1e-09 64.3 80 41.2
Aa31LG10G4470 Aethionema arabicum HOM05D000827 ORTHO05D001576 9.2e-09 63.9 47 57.4
THA.LOC104811358 Tarenaya hassleriana HOM05D000827 ORTHO05D001576 9.2e-09 63.9 48 58.3
Carub.0003s1892 Capsella rubella HOM05D000827 ORTHO05D001576 1.2e-08 63.5 49 55.1
ECA234G2777 Erigeron canadensis HOM05D000827 ORTHO05D001576 1.2e-08 63.5 61 52.5
Migut.B00307 Erythranthe guttata HOM05D000827 ORTHO05D001576 1.2e-08 63.5 49 55.1
Thhalv10011568m.g Eutrema salsugineum HOM05D000827 ORTHO05D001576 1.2e-08 63.5 46 60.9
Oeu003944.1 Olea europaea HOM05D000827 ORTHO05D001576 1.2e-08 63.5 46 58.7
Atru.chr5.2817 Acer truncatum HOM05D000827 ORTHO05D001576 1.6e-08 63.2 42 64.3
CARHR094500 Cardamine hirsuta HOM05D000827 ORTHO05D001576 1.6e-08 63.2 71 43.7
SGA_v2.0_scaffold15G07245 Striga asiatica HOM05D000827 ORTHO05D001576 1.6e-08 63.2 48 58.3
GSVIVG01003552001 Vitis vinifera HOM05D000827 ORTHO05D001576 1.6e-08 63.2 61 55.7
AT3G19080 Arabidopsis thaliana HOM05D000827 ORTHO05D001576 2.1e-08 62.8 48 54.2
CiPaw.01G023400 Carya illinoinensis HOM05D000827 ORTHO05D001576 2.1e-08 62.8 70 48.6
SGA_v2.0_scaffold58G20605 Striga asiatica HOM05D000827 ORTHO05D001576 2.1e-08 62.8 45 60.0
Zm00001eb058450 Zea mays HOM05D000827 ORTHO05D001576 2.1e-08 62.8 58 51.7
Zm00001eb214210 Zea mays HOM05D000827 ORTHO05D001576 2.1e-08 62.8 58 51.7
Lj4C138G6 Lonicera japonica HOM05D000827 ORTHO05D001576 2.7e-08 62.4 65 50.8
RcHm_v2.0_Chr6g0259201 Rosa chinensis HOM05D000827 ORTHO05D001576 2.7e-08 62.4 65 49.2
Sabra04G0096200 Salix brachista HOM05D000827 ORTHO05D001576 2.7e-08 62.4 46 63.0
Sp3g17160 Schrenkiella parvula HOM05D000827 ORTHO05D001576 2.7e-08 62.4 48 56.2
GSVIVG01031805001 Vitis vinifera HOM05D000827 ORTHO05D001576 2.7e-08 62.4 74 44.6
CANSAT25G2754 Cannabis sativa HOM05D000827 ORTHO05D001576 3.5e-08 62.0 41 63.4
Ciclev10028659m.g Citrus clementina HOM05D000827 ORTHO05D001576 3.5e-08 62.0 69 47.8
MD10G1089200 Malus domestica HOM05D000827 ORTHO05D001576 4.6e-08 61.6 52 63.5
PSO675G0901 Papaver somniferum HOM05D000827 ORTHO05D001576 4.6e-08 61.6 50 60.0
HPP92_018724 Vanilla planifolia HOM05D000827 ORTHO05D001576 4.6e-08 61.6 75 44.0
AT1G49520 Arabidopsis thaliana HOM05D000827 ORTHO05D001576 6.0e-08 61.2 47 55.3
Thhalv10020944m.g Eutrema salsugineum HOM05D000827 ORTHO05D001576 6.0e-08 61.2 48 52.1
Nn5g29347 Nelumbo nucifera HOM05D000827 ORTHO05D001576 6.0e-08 61.2 42 66.7
Potri.009G106700 Populus trichocarpa HOM05D000827 ORTHO05D001576 6.0e-08 61.2 47 63.8
SHI49570 Sapria himalayana HOM05D012851 ORTHO05D001576 6.0e-08 61.2 43 65.1
Hund06188 Selenicereus undatus HOM05D000827 ORTHO05D001576 6.0e-08 61.2 43 62.8
AagrBONN_evm.TU.Sc2ySwM_344.2778 Anthoceros agrestis HOM05D000827 ORTHO05D001576 7.8e-08 60.8 53 58.5
CAN.G470.12 Capsicum annuum HOM05D000827 ORTHO05D001576 7.8e-08 60.8 48 56.2
AL3G32450 Arabidopsis lyrata HOM05D000827 ORTHO05D001576 1.0e-07 60.5 47 53.2
Duzib147G1103 Durio zibethinus HOM05D000827 ORTHO05D001576 1.0e-07 60.5 72 45.8
MBI16_g19912_MAGBIO Magnolia biondii HOM05D000827 ORTHO05D001576 1.0e-07 60.5 66 50.0
Nitab4.5_0000806g0120 Nicotiana tabacum HOM05D000827 ORTHO05D001576 1.0e-07 60.5 49 55.1
Nitab4.5_0003704g0020 Nicotiana tabacum HOM05D000827 ORTHO05D001576 1.0e-07 60.5 49 55.1
TWI09G1604 Tripterygium wilfordii HOM05D000827 ORTHO05D001576 1.0e-07 60.5 51 56.9
CDE04G1362 Ceratophyllum demersum HOM05D000827 ORTHO05D001576 1.3e-07 60.1 50 54.0
ECA232G2430 Erigeron canadensis HOM05D000827 ORTHO05D001576 1.3e-07 60.1 48 54.2
Ciclev10026010m.g Citrus clementina HOM05D000827 ORTHO05D001576 1.7e-07 59.7 44 59.1
Cc02_g18450 Coffea canephora HOM05D000827 ORTHO05D001576 1.7e-07 59.7 44 59.1
Gohir.A03G191000 Gossypium hirsutum HOM05D000827 ORTHO05D001576 1.7e-07 59.7 45 55.6
Gohir.D02G212000 Gossypium hirsutum HOM05D000827 ORTHO05D001576 1.7e-07 59.7 45 55.6
Gorai.005G239900 Gossypium raimondii HOM05D000827 ORTHO05D001576 1.7e-07 59.7 45 55.6
Potri.004G145200 Populus trichocarpa HOM05D000827 ORTHO05D001576 1.7e-07 59.7 45 62.2
QL11p038399 Quercus lobata HOM05D000827 ORTHO05D001576 1.7e-07 59.7 41 65.9
unitig_736.g22655 Utricularia gibba HOM05D000827 ORTHO05D001576 1.7e-07 59.7 45 53.3
Atru.chr3.426 Acer truncatum HOM05D000827 ORTHO05D001576 2.3e-07 59.3 43 60.5
Cfa003974 Carpinus fangiana HOM05D000827 ORTHO05D001576 2.3e-07 59.3 84 38.1
AUR62011425 Chenopodium quinoa HOM05D000827 ORTHO05D001576 2.3e-07 59.3 43 60.5
AUR62016635 Chenopodium quinoa HOM05D000827 ORTHO05D001576 2.3e-07 59.3 43 60.5
DCAR_010925 Daucus carota HOM05D000827 ORTHO05D001576 2.3e-07 59.3 47 55.3
Dinv39894 Davidia involucrata HOM05D000827 ORTHO05D001576 2.3e-07 59.3 75 41.3
Glyma.01G183600 Glycine max HOM05D000827 ORTHO05D001576 2.3e-07 59.3 69 44.9
Lj2g0019864 Lotus japonicus HOM05D000827 ORTHO05D001576 2.3e-07 59.3 51 54.9
Lalb_Chr05g0213161 Lupinus albus HOM05D000827 ORTHO05D001576 2.3e-07 59.3 44 59.1
Aqoxy6G00892 Aquilegia oxysepala HOM05D000827 ORTHO05D001576 3.0e-07 58.9 43 60.5
EL10Ac9g21819 Beta vulgaris HOM05D000827 ORTHO05D001576 3.0e-07 58.9 47 57.4
CARHR039550 Cardamine hirsuta HOM05D000827 ORTHO05D001576 3.0e-07 58.9 46 56.5
HanXRQChr15g0473831 Helianthus annuus HOM05D000827 ORTHO05D001576 3.0e-07 58.9 46 58.7
Prupe.8G116100 Prunus persica HOM05D000827 ORTHO05D001576 3.0e-07 58.9 44 56.8
Sc14g0001700 Simmondsia chinensis HOM05D000827 ORTHO05D001576 3.0e-07 58.9 43 62.8
arahy.Tifrunner.gnm1.ann1.CVNS8P Arachis hypogaea HOM05D000827 ORTHO05D001576 3.9e-07 58.5 42 61.9
Glyma.11G058700 Glycine max HOM05D000827 ORTHO05D001576 5.1e-07 58.2 44 59.1
CsaV3_2G017470 Cucumis sativus L. HOM05D000827 ORTHO05D001576 6.6e-07 57.8 58 51.7
CSS0009817 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 8.6e-07 57.4 61 47.5
ClCG02G013290 Citrullus lanatus HOM05D000827 ORTHO05D001576 8.6e-07 57.4 49 57.1
Dinv30830 Davidia involucrata HOM05D000827 ORTHO05D001576 8.6e-07 57.4 49 51.0
Migut.H00467 Erythranthe guttata HOM05D000827 ORTHO05D001576 8.6e-07 57.4 41 61.0
Hma1.2p1_0873F.1_g231240 Hydrangea macrophylla HOM05D000827 ORTHO05D001576 8.6e-07 57.4 44 54.5
Medtr5g018010 Medicago truncatula HOM05D000827 ORTHO05D001576 8.6e-07 57.4 44 56.8
Gohir.A11G189600 Gossypium hirsutum HOM05D000827 ORTHO05D001576 1.1e-06 57.0 44 61.4
Gorai.007G210300 Gossypium raimondii HOM05D000827 ORTHO05D001576 1.1e-06 57.0 44 61.4
Nn6g32082 Nelumbo nucifera HOM05D000827 ORTHO05D001576 1.1e-06 57.0 70 47.1
Sed0021146 Sechium edule HOM05D000827 ORTHO05D001576 1.1e-06 57.0 71 43.7
SMO169G0215 Selaginella moellendorffii HOM05D000827 ORTHO05D001576 1.1e-06 57.0 45 57.8
TWI73G0704 Tripterygium wilfordii HOM05D000827 ORTHO05D001576 1.1e-06 57.0 43 58.1
Haze_15446 Corylus avellana HOM05D000827 ORTHO05D001576 1.5e-06 56.6 60 48.3
MELO3C020943.2 Cucumis melo HOM05D000827 ORTHO05D001576 1.5e-06 56.6 49 57.1
Mapoly0001s0263 Marchantia polymorpha HOM05D000827 ORTHO05D001576 1.5e-06 56.6 53 50.9
QL06p042760 Quercus lobata HOM05D000827 ORTHO05D001576 1.5e-06 56.6 44 59.1
Sed0023407 Sechium edule HOM05D000827 ORTHO05D001576 1.5e-06 56.6 46 54.3
vmacro19480 Vaccinium macrocarpon HOM05D000827 ORTHO05D001576 1.5e-06 56.6 62 46.8
PSO541G1265 Papaver somniferum HOM05D000827 ORTHO05D001576 1.9e-06 56.2 50 56.0
Phvul.002G021500 Phaseolus vulgaris HOM05D000827 ORTHO05D001576 1.9e-06 56.2 51 54.9
Thecc.01G050600 Theobroma cacao HOM05D000827 ORTHO05D001576 1.9e-06 56.2 44 61.4
ATR0712G136 Amborella trichopoda HOM05D000827 ORTHO05D001576 2.5e-06 55.8 58 50.0
A01p13720 Brassica napus HOM05D000827 ORTHO05D001576 3.3e-06 55.5 77 40.3
BraA01t01317Z Brassica rapa HOM05D000827 ORTHO05D001576 3.3e-06 55.5 95 35.8
Cc07_g05720 Coffea canephora HOM05D000827 ORTHO05D001576 3.3e-06 55.5 51 52.9
VMungo1215G2818 Vigna mungo HOM05D000827 ORTHO05D001576 3.3e-06 55.5 42 57.1
Atru.chr1.2445 Acer truncatum HOM05D000827 ORTHO05D001576 4.3e-06 55.1 48 54.2
A08p15670 Brassica napus HOM05D000827 ORTHO05D001576 4.3e-06 55.1 44 61.4
BraA08t33547Z Brassica rapa HOM05D000827 ORTHO05D001576 4.3e-06 55.1 44 61.4
Rhsim05G0080300 Rhododendron simsii HOM05D000827 ORTHO05D001576 4.3e-06 55.1 81 39.5
C07p51820 Brassica napus HOM05D000827 ORTHO05D001576 5.6e-06 54.7 95 40.0
BolC7t45684H Brassica oleracea HOM05D000827 ORTHO05D001576 5.6e-06 54.7 95 40.0
Thecc.06G233700 Theobroma cacao HOM05D000827 ORTHO05D001576 5.6e-06 54.7 44 61.4
vmacro17920 Vaccinium macrocarpon HOM05D000827 ORTHO05D001576 5.6e-06 54.7 49 51.0
Zm00001eb199700 Zea mays HOM05D000827 ORTHO05D001576 5.6e-06 54.7 51 54.9
AL7G31250 Arabidopsis lyrata HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
AT4G22360 Arabidopsis thaliana HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
BcaB03g11728 Brassica carinata HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
BcaC01g00773 Brassica carinata HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
BcaC09g51099 Brassica carinata HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
BcaNung02498 Brassica carinata HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
A03p53490 Brassica napus HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
C01p16630 Brassica napus HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
C03p84120 Brassica napus HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
BolC1t01610H Brassica oleracea HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
BolC3t20691H Brassica oleracea HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
BraA03t14415Z Brassica rapa HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
CARHR229270 Cardamine hirsuta HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
COL.COLO4_11352 Corchorus olitorius HOM05D000827 ORTHO05D001576 7.3e-06 54.3 61 52.5
Dinv29954 Davidia involucrata HOM05D000827 ORTHO05D001576 7.3e-06 54.3 42 54.8
Eucgr.L03369 Eucalyptus grandis HOM05D000827 ORTHO05D001576 7.3e-06 54.3 50 60.0
Thhalv10025487m.g Eutrema salsugineum HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
Gohir.A06G205100 Gossypium hirsutum HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
Gohir.D06G216400 Gossypium hirsutum HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
Gorai.010G249800 Gossypium raimondii HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
Potri.016G013400 Populus trichocarpa HOM05D000827 ORTHO05D001576 7.3e-06 54.3 87 37.9
Rhsim02G0099300 Rhododendron simsii HOM05D000827 ORTHO05D001576 7.3e-06 54.3 50 60.0
Sabra06G0008800 Salix brachista HOM05D000827 ORTHO05D001576 7.3e-06 54.3 88 37.5
Sp7g20490 Schrenkiella parvula HOM05D000827 ORTHO05D001576 7.3e-06 54.3 44 59.1
Sc03g0008170 Simmondsia chinensis HOM05D000827 ORTHO05D001576 7.3e-06 54.3 48 60.4
TPR.G18338 Trifolium pratense HOM05D000827 ORTHO05D001576 7.3e-06 54.3 48 50.0
Aa31LG6G4460 Aethionema arabicum HOM05D000827 ORTHO05D001576 9.5e-06 53.9 42 61.9
ATR0767G010 Amborella trichopoda HOM05D000827 ORTHO05D001576 9.5e-06 53.9 46 58.7
CiPaw.02G010400 Carya illinoinensis HOM05D000827 ORTHO05D001576 9.5e-06 53.9 42 59.5
Ca_24794_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001576 9.5e-06 53.9 44 52.3
Duzib264G0886 Durio zibethinus HOM05D000827 ORTHO05D001576 9.5e-06 53.9 44 59.1
Manes.08G070900 Manihot esculenta HOM05D000827 ORTHO05D001576 9.5e-06 53.9 49 57.1
PGSC0003DMG400000750 Solanum tuberosum HOM05D000827 ORTHO05D001576 9.5e-06 53.9 49 49.0


User provided reference genes

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