Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.7e-57 225.7 109 100.0
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.0e-18 95.9 92 57.6
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.7e-17 92.8 94 55.3
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.3e-17 92.4 105 52.4
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 5.0e-17 91.3 102 52.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.9e-16 89.4 99 52.5
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.9e-16 89.4 99 52.5
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.9e-16 89.4 104 51.9
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-15 86.3 92 53.3
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.1e-15 85.9 99 50.5
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 3.6e-15 85.1 103 48.5
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 3.6e-15 85.1 102 52.0
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 4.7e-15 84.7 101 49.5
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 6.1e-15 84.3 105 49.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.0e-14 83.6 98 48.0
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 3.0e-14 82.0 104 47.1
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 3.0e-14 82.0 119 42.0
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 5.2e-14 81.3 111 45.9
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 5.2e-14 81.3 106 48.1
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.9e-14 80.5 100 49.0
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.2e-13 80.1 103 47.6
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.2e-13 80.1 99 49.5
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.2e-13 80.1 114 46.5
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 2.6e-13 79.0 103 46.6
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.6e-13 79.0 118 44.1
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.6e-13 79.0 98 48.0
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.4e-13 78.6 100 48.0
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.4e-13 78.6 100 47.0
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.4e-13 78.6 87 56.3
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 4.4e-13 78.2 87 49.4
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 4.4e-13 78.2 119 41.2
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.8e-13 77.8 120 43.3
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.8e-13 77.8 119 40.3
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.5e-13 77.4 100 47.0
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 7.5e-13 77.4 88 48.9
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.3e-12 76.6 116 41.4
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.7e-12 76.3 108 40.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.7e-12 76.3 103 46.6
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.7e-12 76.3 90 48.9
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 2.2e-12 75.9 108 40.7
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.9e-12 75.5 110 44.5
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.9e-12 75.5 88 51.1
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.7e-12 75.1 89 49.4
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 4.9e-12 74.7 107 47.7
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 4.9e-12 74.7 101 43.6
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 4.9e-12 74.7 107 43.9
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 6.4e-12 74.3 106 40.6
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 6.4e-12 74.3 106 40.6
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 6.4e-12 74.3 102 44.1
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 8.3e-12 73.9 99 47.5
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 8.3e-12 73.9 98 43.9
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 8.3e-12 73.9 110 47.3
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 8.3e-12 73.9 110 47.3
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 8.3e-12 73.9 86 47.7
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.1e-11 73.6 98 46.9
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.1e-11 73.6 96 47.9
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.1e-11 73.6 105 44.8
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.4e-11 73.2 88 50.0
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.4e-11 73.2 103 44.7
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.4e-11 73.2 98 48.0
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.4e-11 73.2 86 51.2
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.9e-11 72.8 96 45.8
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.9e-11 72.8 101 45.5
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.9e-11 72.8 98 43.9
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.9e-11 72.8 92 47.8
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 2.4e-11 72.4 108 38.9
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.4e-11 72.4 113 43.4
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.4e-11 72.4 102 43.1
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 3.2e-11 72.0 102 46.1
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 4.1e-11 71.6 91 47.3
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.1e-11 71.6 110 46.4
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 5.4e-11 71.2 106 44.3
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 7.0e-11 70.9 106 43.4
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 7.0e-11 70.9 90 48.9
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 7.0e-11 70.9 98 43.9
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 7.0e-11 70.9 104 43.3
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 9.2e-11 70.5 96 45.8
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 9.2e-11 70.5 99 43.4
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.2e-10 70.1 88 43.2
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-10 70.1 101 42.6
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.2e-10 70.1 96 44.8
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 1.6e-10 69.7 101 42.6
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.0e-10 69.3 104 39.4
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.0e-10 69.3 93 45.2
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.0e-10 69.3 93 45.2
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 2.0e-10 69.3 100 46.0
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.7e-10 68.9 99 41.4
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.7e-10 68.9 99 42.4
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.7e-10 68.9 90 44.4
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 3.5e-10 68.6 106 43.4
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 3.5e-10 68.6 102 41.2
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 3.5e-10 68.6 99 39.4
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 3.5e-10 68.6 93 49.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 3.5e-10 68.6 89 44.9
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 3.5e-10 68.6 99 43.4
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.5e-10 68.6 108 43.5
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 4.6e-10 68.2 102 43.1
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 4.6e-10 68.2 108 40.7
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 4.6e-10 68.2 108 40.7
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 4.6e-10 68.2 108 40.7
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.6e-10 68.2 105 43.8
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 6.0e-10 67.8 106 44.3
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 7.8e-10 67.4 95 44.2
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 7.8e-10 67.4 88 50.0
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 7.8e-10 67.4 104 42.3
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.0e-09 67.0 97 47.4
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.0e-09 67.0 97 42.3
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.0e-09 67.0 111 39.6
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.3e-09 66.6 88 46.6
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.3e-09 66.6 112 41.1
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.3e-09 66.6 107 37.4
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-09 66.6 90 46.7
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.7e-09 66.2 102 40.2
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.7e-09 66.2 88 45.5
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.3e-09 65.9 100 47.0
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 2.3e-09 65.9 103 43.7
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 2.3e-09 65.9 102 41.2
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 2.3e-09 65.9 94 45.7
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 3.0e-09 65.5 95 38.9
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.0e-09 65.5 92 43.5
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.0e-09 65.5 97 41.2
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.0e-09 65.5 90 46.7
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 3.9e-09 65.1 103 43.7
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 5.0e-09 64.7 94 43.6
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.0e-09 64.7 98 42.9
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 8.6e-09 63.9 87 40.2
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 8.6e-09 63.9 102 39.2
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.6e-09 63.9 94 42.6
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.1e-08 63.5 102 40.2
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.1e-08 63.5 100 40.0
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-08 63.5 94 42.6
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 1.1e-08 63.5 97 41.2
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.5e-08 63.2 102 45.1
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.9e-08 62.8 87 44.8
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 2.5e-08 62.4 97 39.2
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 2.5e-08 62.4 102 39.2
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 4.3e-08 61.6 100 40.0
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 5.6e-08 61.2 89 41.6
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.6e-08 61.2 89 41.6
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 5.6e-08 61.2 96 41.7
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 7.3e-08 60.8 106 40.6
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 9.5e-08 60.5 87 39.1
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 9.5e-08 60.5 87 44.8
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.2e-07 60.1 87 43.7
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-07 60.1 92 38.0
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 1.2e-07 60.1 87 39.1
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-07 60.1 92 38.0
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.2e-07 60.1 128 33.6
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.2e-07 60.1 128 33.6
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.1e-07 59.3 87 42.5
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 3.6e-07 58.5 87 43.7
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 3.6e-07 58.5 102 44.1
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 4.7e-07 58.2 86 41.9
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 6.2e-07 57.8 68 44.1
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.2e-07 57.8 94 39.4
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.1e-06 57.0 87 40.2
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.1e-06 57.0 108 38.9
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 2.3e-06 55.8 87 39.1
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 5.2e-06 54.7 79 40.5
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 5.2e-06 54.7 79 40.5
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 5.2e-06 54.7 97 41.2
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.8e-06 54.3 129 31.8
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 6.8e-06 54.3 86 38.4
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 8.9e-06 53.9 105 38.1


User provided reference genes

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