Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 3.2e-203 711.4 336 100.0
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 9.3e-38 161.8 115 60.9
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 2.1e-37 160.6 132 57.6
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 4.6e-37 159.5 125 56.8
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 4.6e-37 159.5 122 59.8
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 4.6e-37 159.5 123 56.9
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 3.0e-36 156.8 118 55.9
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 5.1e-36 156.0 128 53.9
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 5.1e-36 156.0 120 55.8
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.1e-35 154.8 118 55.9
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 1.1e-35 154.8 118 55.9
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.1e-35 154.8 130 56.9
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 1.5e-35 154.5 136 55.9
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 3.3e-35 153.3 122 56.6
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 3.3e-35 153.3 134 53.7
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 4.3e-35 152.9 124 54.8
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 5.7e-35 152.5 121 56.2
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 4.8e-34 149.4 121 56.2
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 1.8e-33 147.5 122 54.9
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 4.1e-33 146.4 122 54.9
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 9.0e-33 145.2 122 54.9
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 1.2e-32 144.8 125 52.8
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 3.4e-32 143.3 117 56.4
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 3.4e-32 143.3 126 52.4
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 3.4e-32 143.3 126 52.4
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 7.7e-32 142.1 101 59.4
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 1.0e-31 141.7 128 51.6
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 5.0e-31 139.4 120 51.7
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 5.0e-31 139.4 127 51.2
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 8.5e-31 138.7 114 52.6
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.1e-30 138.3 119 51.3
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.5e-30 137.1 123 53.7
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 3.2e-30 136.7 121 52.1
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 3.2e-30 136.7 115 53.0
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 3.2e-30 136.7 123 50.4
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 3.2e-30 136.7 159 45.3
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 5.5e-30 136.0 120 53.3
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 1.2e-29 134.8 130 49.2
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.2e-29 134.8 124 50.8
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 2.1e-29 134.0 122 50.8
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 2.7e-29 133.7 125 52.0
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 3.6e-29 133.3 122 50.8
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 3.6e-29 133.3 135 48.1
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 4.6e-29 132.9 123 50.4
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 4.6e-29 132.9 120 51.7
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.9e-29 132.1 132 48.5
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 1.0e-28 131.7 120 50.0
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.4e-28 131.3 124 44.4
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 2.3e-28 130.6 119 47.9
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 3.0e-28 130.2 118 49.2
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 3.9e-28 129.8 114 53.5
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.9e-28 129.8 122 50.8
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 6.7e-28 129.0 137 48.9
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.5e-27 127.9 121 48.8
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 2.0e-27 127.5 137 48.2
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.0e-27 127.5 118 50.8
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 2.5e-27 127.1 99 57.6
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 3.3e-27 126.7 103 52.4
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 4.3e-27 126.3 125 49.6
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 4.3e-27 126.3 121 47.1
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 5.7e-27 125.9 137 46.0
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 9.7e-27 125.2 137 47.4
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.2e-26 124.0 137 47.4
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 3.7e-26 123.2 153 41.2
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 3.7e-26 123.2 121 46.3
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 4.8e-26 122.9 120 46.7
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 4.8e-26 122.9 139 43.2
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 6.3e-26 122.5 121 44.6
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 8.2e-26 122.1 121 46.3
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 8.2e-26 122.1 121 46.3
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.1e-25 121.7 121 47.9
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.4e-25 121.3 115 50.4
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 1.8e-25 120.9 121 45.5
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 2.4e-25 120.6 114 50.0
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 2.4e-25 120.6 109 48.6
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 2.4e-25 120.6 124 46.8
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 2.4e-25 120.6 121 49.6
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.4e-25 120.6 119 47.1
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 4.1e-25 119.8 135 43.7
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 5.3e-25 119.4 118 44.9
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.5e-24 117.9 116 48.3
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 1.5e-24 117.9 122 44.3
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 2.6e-24 117.1 120 43.3
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 3.4e-24 116.7 115 45.2
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.5e-24 116.3 118 47.5
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.0e-23 115.2 118 44.9
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.0e-23 115.2 118 44.9
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 1.3e-23 114.8 121 40.5
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 1.7e-23 114.4 121 44.6
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 1.7e-23 114.4 115 44.3
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 2.2e-23 114.0 76 61.8
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 2.2e-23 114.0 113 46.9
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 5.0e-23 112.8 121 44.6
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 6.5e-23 112.5 125 42.4
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 1.1e-22 111.7 73 61.6
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 1.1e-22 111.7 127 43.3
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.4e-22 111.3 106 49.1
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 1.9e-22 110.9 121 38.8
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 2.5e-22 110.5 101 47.5
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.2e-22 110.2 94 50.0
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 7.2e-22 109.0 122 41.0
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 1.2e-21 108.2 133 40.6
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.6e-21 107.8 124 41.9
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 1.6e-21 107.8 112 43.8
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 2.1e-21 107.5 118 41.5
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 2.7e-21 107.1 124 41.9
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 2.7e-21 107.1 124 41.9
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 4.7e-21 106.3 122 41.8
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 4.7e-21 106.3 126 41.3
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 4.7e-21 106.3 126 42.9
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.7e-21 106.3 75 60.0
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 6.1e-21 105.9 120 39.2
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 7.9e-21 105.5 118 41.5
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 7.9e-21 105.5 118 41.5
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 7.9e-21 105.5 99 45.5
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 7.9e-21 105.5 122 41.0
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 1.0e-20 105.1 120 39.2
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.8e-20 104.4 105 46.7
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 1.8e-20 104.4 118 40.7
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-20 104.4 118 40.7
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 1.8e-20 104.4 118 40.7
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 2.3e-20 104.0 99 48.5
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 8.8e-20 102.1 122 39.3
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-19 101.7 120 45.0
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-19 101.7 120 45.0
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.5e-19 101.3 120 45.0
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.5e-19 101.3 96 47.9
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 2.0e-19 100.9 119 42.9
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.6e-19 100.5 70 62.9
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 3.3e-19 100.1 126 38.9
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 5.7e-19 99.4 118 41.5
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 9.7e-19 98.6 117 39.3
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 9.7e-19 98.6 126 40.5
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-18 98.2 121 37.2
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.7e-18 97.8 73 54.8
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 1.7e-18 97.8 122 42.6
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.7e-18 97.8 97 44.3
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-18 97.8 102 43.1
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-18 97.8 102 43.1
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 6.3e-18 95.9 104 44.2
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 8.2e-18 95.5 122 41.8
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 8.2e-18 95.5 121 42.1
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-17 95.1 122 41.8
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.1e-17 95.1 122 41.8
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 2.4e-17 94.0 72 55.6
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 2.0e-16 90.9 79 45.6
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 7.7e-16 89.0 124 36.3
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.7e-15 87.8 94 43.6
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 8.5e-15 85.5 118 39.0
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 1.9e-14 84.3 119 39.5
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.5e-14 84.0 118 39.8
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.1e-09 68.6 53 50.9
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 5.3e-09 66.2 49 53.1
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 9.1e-09 65.5 72 41.7
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 3.5e-08 63.5 41 63.4
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 7.7e-08 62.4 115 33.9
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 2.5e-06 57.4 97 33.0
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 2.5e-06 57.4 97 33.0
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 3.2e-06 57.0 44 56.8


User provided reference genes

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