Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00537 Sapria himalayana HOM05D002672 ORTHO05D002887 1.3e-35 152.5 78 100.0
Manes.08G150000 Manihot esculenta HOM05D002672 ORTHO05D002887 4.7e-17 90.9 71 69.0
Sabra13G0052300 Salix brachista HOM05D002672 ORTHO05D002887 8.0e-17 90.1 74 66.2
Cpa.g.sc51.101 Carica papaya HOM05D002672 ORTHO05D002887 1.4e-16 89.4 72 68.1
TWI77G0420 Tripterygium wilfordii HOM05D002672 ORTHO05D002887 1.4e-16 89.4 74 66.2
TWI74G0403 Tripterygium wilfordii HOM05D002672 ORTHO05D002887 1.8e-16 89.0 77 63.6
Thhalv10003462m.g Eutrema salsugineum HOM05D002672 ORTHO05D002887 3.0e-16 88.2 71 62.0
Potri.013G058800 Populus trichocarpa HOM05D002672 ORTHO05D002887 3.0e-16 88.2 74 64.9
Ciclev10021354m.g Citrus clementina HOM05D002672 ORTHO05D002887 5.2e-16 87.4 71 67.6
Medtr7g085450 Medicago truncatula HOM05D002672 ORTHO05D002887 6.8e-16 87.0 72 63.9
Potri.019G033800 Populus trichocarpa HOM05D002672 ORTHO05D002887 8.9e-16 86.7 74 63.5
Sp7g07100 Schrenkiella parvula HOM05D002672 ORTHO05D002887 1.2e-15 86.3 71 60.6
Thecc.05G293600 Theobroma cacao HOM05D002672 ORTHO05D002887 1.5e-15 85.9 71 64.8
Actinidia22088 Actinidia chinensis HOM05D002672 ORTHO05D002887 2.6e-15 85.1 71 67.6
Dinv37010 Davidia involucrata HOM05D002672 ORTHO05D002887 2.6e-15 85.1 71 66.2
Gohir.A11G258600 Gossypium hirsutum HOM05D002672 ORTHO05D002887 3.4e-15 84.7 71 62.0
Gohir.D11G268700 Gossypium hirsutum HOM05D002672 ORTHO05D002887 3.4e-15 84.7 71 62.0
Gorai.007G288500 Gossypium raimondii HOM05D002672 ORTHO05D002887 3.4e-15 84.7 71 62.0
Carub.0002s0957 Capsella rubella HOM05D002672 ORTHO05D002887 4.4e-15 84.3 73 61.6
CiPaw.09G001400 Carya illinoinensis HOM05D002672 ORTHO05D002887 4.4e-15 84.3 80 61.2
AL1G64630 Arabidopsis lyrata HOM05D002672 ORTHO05D002887 5.7e-15 84.0 71 59.2
AT1G54390 Arabidopsis thaliana HOM05D002672 ORTHO05D002887 5.7e-15 84.0 71 59.2
CARHR055500 Cardamine hirsuta HOM05D002672 ORTHO05D002887 7.5e-15 83.6 73 61.6
Duzib106G0634 Durio zibethinus HOM05D002672 ORTHO05D002887 7.5e-15 83.6 71 63.4
Duzib177G0497 Durio zibethinus HOM05D002672 ORTHO05D002887 7.5e-15 83.6 71 62.0
A04p09620 Brassica napus HOM05D002672 ORTHO05D002887 9.8e-15 83.2 73 60.3
BraA04t16621Z Brassica rapa HOM05D002672 ORTHO05D002887 9.8e-15 83.2 73 60.3
CsaV3_4G013320 Cucumis sativus L. HOM05D002672 ORTHO05D002887 9.8e-15 83.2 71 63.4
Sabra19G0041700 Salix brachista HOM05D002672 ORTHO05D002887 1.7e-14 82.4 74 60.8
Rhsim03G0001100 Rhododendron simsii HOM05D002672 ORTHO05D002887 2.2e-14 82.0 71 63.4
MELO3C008797.2 Cucumis melo HOM05D002672 ORTHO05D002887 2.9e-14 81.6 72 65.3
Eucgr.A02091 Eucalyptus grandis HOM05D002672 ORTHO05D002887 2.9e-14 81.6 73 61.6
Glyma.19G110500 Glycine max HOM05D002672 ORTHO05D002887 2.9e-14 81.6 72 61.1
Actinidia30558 Actinidia chinensis HOM05D002672 ORTHO05D002887 4.9e-14 80.9 71 64.8
Aa31LG2G1980 Aethionema arabicum HOM05D002672 ORTHO05D002887 4.9e-14 80.9 71 59.2
Ca_08259_v3 Cicer arietinum L. HOM05D002672 ORTHO05D002887 4.9e-14 80.9 74 62.2
Atru.chr2.1366 Acer truncatum HOM05D002672 ORTHO05D002887 6.3e-14 80.5 71 62.0
Lj1g0022931 Lotus japonicus HOM05D002672 ORTHO05D002887 1.4e-13 79.3 74 60.8
VMungo1383G1105 Vigna mungo HOM05D002672 ORTHO05D002887 1.4e-13 79.3 72 59.7
COL.COLO4_13611 Corchorus olitorius HOM05D002672 ORTHO05D002887 1.8e-13 79.0 71 60.6
BcaB06g26927 Brassica carinata HOM05D002672 ORTHO05D002887 2.4e-13 78.6 71 56.3
ClCG04G005270 Citrullus lanatus HOM05D002672 ORTHO05D002887 2.4e-13 78.6 71 60.6
Peaxi162Scf00003g04833 Petunia axillaris HOM05D002672 ORTHO05D002887 2.4e-13 78.6 71 63.4
Sed0007674 Sechium edule HOM05D002672 ORTHO05D002887 2.4e-13 78.6 71 60.6
GSVIVG01033390001 Vitis vinifera HOM05D002672 ORTHO05D002887 2.4e-13 78.6 71 62.0
MD14G1002200 Malus domestica HOM05D002672 ORTHO05D002887 3.2e-13 78.2 71 60.6
THA.LOC104823784 Tarenaya hassleriana HOM05D002672 ORTHO05D002887 3.2e-13 78.2 71 59.2
Phvul.001G109900 Phaseolus vulgaris HOM05D002672 ORTHO05D002887 4.1e-13 77.8 72 58.3
Prupe.7G003300 Prunus persica HOM05D002672 ORTHO05D002887 5.4e-13 77.4 71 60.6
BcaC02g09472 Brassica carinata HOM05D002672 ORTHO05D002887 9.2e-13 76.6 71 60.6
C04p43190 Brassica napus HOM05D002672 ORTHO05D002887 9.2e-13 76.6 71 60.6
BolC4t25896H Brassica oleracea HOM05D002672 ORTHO05D002887 9.2e-13 76.6 71 60.6
QL07p020095 Quercus lobata HOM05D002672 ORTHO05D002887 1.2e-12 76.3 92 48.9
PGR142G0008 Punica granatum HOM05D002672 ORTHO05D002887 1.6e-12 75.9 71 62.0
TAR254G0001 Trochodendron aralioides HOM05D002672 ORTHO05D002887 1.6e-12 75.9 74 58.1
Lalb_Chr14g0364451 Lupinus albus HOM05D002672 ORTHO05D002887 2.0e-12 75.5 77 55.8
vmacro12572 Vaccinium macrocarpon HOM05D002672 ORTHO05D002887 2.0e-12 75.5 71 59.2
Nitab4.5_0007223g0020 Nicotiana tabacum HOM05D002672 ORTHO05D002887 2.7e-12 75.1 70 62.9
Nitab4.5_0008228g0020 Nicotiana tabacum HOM05D002672 ORTHO05D002887 2.7e-12 75.1 70 62.9
Nn2g15174 Nelumbo nucifera HOM05D002672 ORTHO05D002887 3.5e-12 74.7 71 60.6
CAN.G960.51 Capsicum annuum HOM05D002672 ORTHO05D002887 5.9e-12 73.9 70 60.0
AUR62032684 Chenopodium quinoa HOM05D002672 ORTHO05D002887 5.9e-12 73.9 71 59.2
Solyc10g078520.2 Solanum lycopersicum HOM05D002672 ORTHO05D002887 5.9e-12 73.9 70 62.9
Sopen10g029170 Solanum pennellii HOM05D002672 ORTHO05D002887 5.9e-12 73.9 70 62.9
PGSC0003DMG400008367 Solanum tuberosum HOM05D002672 ORTHO05D002887 5.9e-12 73.9 70 62.9
TPR.G5877 Trifolium pratense HOM05D002672 ORTHO05D002887 5.9e-12 73.9 74 58.1
AUR62032064 Chenopodium quinoa HOM05D002672 ORTHO05D002887 1.0e-11 73.2 71 57.7
Oeu003208.1 Olea europaea HOM05D002672 ORTHO05D002887 1.3e-11 72.8 71 57.7
Oeu003209.1 Olea europaea HOM05D002672 ORTHO05D002887 1.3e-11 72.8 71 57.7
Oeu003210.1 Olea europaea HOM05D002672 ORTHO05D002887 1.3e-11 72.8 71 57.7
arahy.Tifrunner.gnm1.ann1.53N7TD Arachis hypogaea HOM05D002672 ORTHO05D002887 1.7e-11 72.4 77 54.5
arahy.Tifrunner.gnm1.ann1.6BXT91 Arachis hypogaea HOM05D002672 ORTHO05D002887 1.7e-11 72.4 77 54.5
MSTRG.27677 Avicennia marina HOM05D002672 ORTHO05D002887 1.7e-11 72.4 71 62.0
HanXRQChr01g0024701 Helianthus annuus HOM05D002672 ORTHO05D002887 1.7e-11 72.4 71 59.2
Psat3g089120 Pisum sativum HOM05D002672 ORTHO05D002887 2.3e-11 72.0 76 55.3
Lj1A1137T84 Lonicera japonica HOM05D002672 ORTHO05D002887 2.9e-11 71.6 70 62.9
Migut.C00472 Erythranthe guttata HOM05D002672 ORTHO05D002887 3.9e-11 71.2 71 56.3
Migut.D01187 Erythranthe guttata HOM05D002672 ORTHO05D002887 3.9e-11 71.2 71 56.3
arahy.Tifrunner.gnm1.ann1.SA2BAT Arachis hypogaea HOM05D002672 ORTHO05D002887 5.0e-11 70.9 77 53.2
Haze_11190 Corylus avellana HOM05D002672 ORTHO05D002887 5.0e-11 70.9 74 58.1
Lsat_1_v5_gn_1_59540 Lactuca sativa HOM05D002672 ORTHO05D002887 5.0e-11 70.9 71 57.7
TAR623G0799 Trochodendron aralioides HOM05D002672 ORTHO05D002887 6.6e-11 70.5 71 54.9
Haze_11185 Corylus avellana HOM05D002672 ORTHO05D002887 1.9e-10 68.9 74 58.1
CDE10G0048 Ceratophyllum demersum HOM05D002672 ORTHO05D002887 2.5e-10 68.6 71 56.3
ECA285G0009 Erigeron canadensis HOM05D002672 ORTHO05D002887 2.5e-10 68.6 71 57.7
SGA_v2.0_scaffold59G20726 Striga asiatica HOM05D002672 ORTHO05D002887 4.3e-10 67.8 71 54.9
ATR0697G210 Amborella trichopoda HOM05D002672 ORTHO05D002887 7.3e-10 67.0 71 52.1
EL10Ac3g06813 Beta vulgaris HOM05D002672 ORTHO05D002887 9.5e-10 66.6 70 54.3
SEGI_38200 Sequoiadendron giganteum HOM05D002672 ORTHO05D002887 9.5e-10 66.6 74 50.0
Aqoxy2G00200 Aquilegia oxysepala HOM05D002672 ORTHO05D002887 1.2e-09 66.2 67 55.2
CDE10G0711 Ceratophyllum demersum HOM05D002672 ORTHO05D002887 1.2e-09 66.2 71 54.9
PGR042G0488 Punica granatum HOM05D002672 ORTHO05D002887 1.2e-09 66.2 73 53.4
Sc19g0006480 Simmondsia chinensis HOM05D002672 ORTHO05D002887 1.6e-09 65.9 71 54.9
DCAR_016869 Daucus carota HOM05D002672 ORTHO05D002887 2.1e-09 65.5 71 57.7
Aqoxy1G00499 Aquilegia oxysepala HOM05D002672 ORTHO05D002887 3.6e-09 64.7 67 53.7
CiPaw.10G000600 Carya illinoinensis HOM05D002672 ORTHO05D002887 4.7e-09 64.3 78 52.6
RcHm_v2.0_Chr3g0497201 Rosa chinensis HOM05D002672 ORTHO05D002887 4.7e-09 64.3 71 50.7
SEGI_33253 Sequoiadendron giganteum HOM05D002672 ORTHO05D002887 4.7e-09 64.3 70 50.0
FvH4_1g28050 Fragaria vesca HOM05D002672 ORTHO05D002887 1.0e-08 63.2 71 52.1
PSO063G3245 Papaver somniferum HOM05D002672 ORTHO05D002887 1.4e-08 62.8 70 50.0
PSO339G0446 Papaver somniferum HOM05D002672 ORTHO05D002887 1.4e-08 62.8 70 50.0
DCAR_013691 Daucus carota HOM05D002672 ORTHO05D002887 1.8e-08 62.4 71 53.5
FAN23G2462 Fragaria x ananassa HOM05D002672 ORTHO05D002887 1.8e-08 62.4 71 50.7
FAN26G1451 Fragaria x ananassa HOM05D002672 ORTHO05D002887 1.8e-08 62.4 71 50.7
CSS0007216 Camellia sinensis var. sinensis HOM05D002672 ORTHO05D002887 2.3e-08 62.0 102 43.1
DCAR_009678 Daucus carota HOM05D002672 ORTHO05D002887 2.3e-08 62.0 71 54.9
Cc00_g05140 Coffea canephora HOM05D002672 ORTHO05D002887 4.0e-08 61.2 72 50.0
HanXRQChr03g0090411 Helianthus annuus HOM05D002672 ORTHO05D002887 6.8e-08 60.5 71 53.5
AagrBONN_evm.TU.Sc2ySwM_362.1458 Anthoceros agrestis HOM05D002672 ORTHO05D002887 1.5e-07 59.3 70 45.7
FvH4_7g02040 Fragaria vesca HOM05D002672 ORTHO05D002887 2.6e-07 58.5 70 48.6
Os03g0748200 Oryza sativa ssp. japonica HOM05D002672 ORTHO05D002887 2.6e-07 58.5 67 49.3
FAN03G1589 Fragaria x ananassa HOM05D002672 ORTHO05D002887 3.4e-07 58.2 68 50.0
FAN06G3050 Fragaria x ananassa HOM05D003775 ORTHO05D004314 3.4e-07 58.2 70 48.6
Mapoly0099s0054 Marchantia polymorpha HOM05D002672 ORTHO05D002887 3.4e-07 58.2 70 45.7
Zm00001eb057160 Zea mays HOM05D002672 ORTHO05D002887 4.4e-07 57.8 67 49.3
CBR_g34558 Chara braunii HOM05D002672 ORTHO05D002887 2.9e-06 55.1 71 43.7
HPP92_009426 Vanilla planifolia HOM05D002672 ORTHO05D002887 4.9e-06 54.3 70 42.9
CANSAT78G2220 Cannabis sativa HOM05D002672 ORTHO05D002887 8.3e-06 53.5 96 39.6
SMO116G0117 Selaginella moellendorffii HOM05D002672 ORTHO05D002887 8.3e-06 53.5 70 41.4


User provided reference genes

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