Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.7e-112 409.5 216 100.0
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 3.5e-46 189.1 122 77.0
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 3.9e-45 185.7 122 76.2
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 4.3e-44 182.2 122 74.6
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 4.3e-44 182.2 122 74.6
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 5.6e-44 181.8 122 74.6
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 5.6e-44 181.8 139 67.6
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 1.2e-43 180.6 122 73.8
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.2e-43 180.6 122 74.6
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.6e-43 180.3 139 67.6
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.6e-43 180.3 139 67.6
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.6e-43 180.3 139 67.6
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 1.1e-42 177.6 146 65.8
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.8e-42 176.8 122 73.0
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.8e-42 176.8 122 72.1
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.1e-42 176.0 122 73.0
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 5.2e-42 175.3 146 65.8
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 6.9e-42 174.9 144 66.0
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 6.9e-42 174.9 122 72.1
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 6.9e-42 174.9 144 66.0
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 8.9e-42 174.5 122 72.1
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 8.9e-42 174.5 122 72.1
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 8.9e-42 174.5 122 72.1
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 8.9e-42 174.5 122 71.3
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 8.9e-42 174.5 122 72.1
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.2e-41 174.1 122 71.3
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.2e-41 174.1 122 73.0
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.2e-41 174.1 122 71.3
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.2e-41 174.1 139 66.2
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.2e-41 174.1 159 61.0
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.2e-41 174.1 122 73.0
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 1.2e-41 174.1 122 72.1
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 1.2e-41 174.1 122 73.0
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 1.5e-41 173.7 136 64.7
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.5e-41 173.7 131 66.4
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 1.5e-41 173.7 123 73.2
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.5e-41 173.7 123 73.2
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 1.5e-41 173.7 123 73.2
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-41 173.7 122 70.5
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.5e-41 173.7 122 70.5
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.5e-41 173.7 122 71.3
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 2.0e-41 173.3 122 71.3
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 2.0e-41 173.3 122 71.3
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 2.0e-41 173.3 123 73.2
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 2.0e-41 173.3 122 71.3
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 2.0e-41 173.3 122 73.0
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 2.0e-41 173.3 122 72.1
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 2.0e-41 173.3 123 72.4
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 2.6e-41 172.9 123 72.4
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.6e-41 172.9 122 72.1
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 2.6e-41 172.9 122 69.7
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 3.4e-41 172.6 123 72.4
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 3.4e-41 172.6 122 71.3
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 3.4e-41 172.6 131 67.2
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 3.4e-41 172.6 131 67.2
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 3.4e-41 172.6 123 71.5
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 4.4e-41 172.2 123 71.5
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 4.4e-41 172.2 143 63.6
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 7.6e-41 171.4 123 71.5
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 7.6e-41 171.4 122 71.3
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 7.6e-41 171.4 122 71.3
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 7.6e-41 171.4 122 71.3
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 7.6e-41 171.4 122 70.5
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 9.9e-41 171.0 123 71.5
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 9.9e-41 171.0 123 71.5
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 9.9e-41 171.0 122 70.5
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.3e-40 170.6 122 68.9
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.7e-40 170.2 122 69.7
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.7e-40 170.2 122 70.5
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.7e-40 170.2 143 61.5
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.7e-40 170.2 122 66.4
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.7e-40 170.2 122 68.9
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 1.7e-40 170.2 122 69.7
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.7e-40 170.2 122 69.7
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.7e-40 170.2 122 71.3
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.2e-40 169.9 122 69.7
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.2e-40 169.9 123 71.5
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.2e-40 169.9 122 72.1
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 2.2e-40 169.9 142 62.0
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 2.2e-40 169.9 122 68.9
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.2e-40 169.9 122 69.7
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 2.2e-40 169.9 122 68.9
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 2.9e-40 169.5 122 70.5
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 2.9e-40 169.5 122 69.7
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 2.9e-40 169.5 122 69.7
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 3.8e-40 169.1 122 69.7
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 4.9e-40 168.7 122 67.2
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 4.9e-40 168.7 122 69.7
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 6.4e-40 168.3 122 69.7
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 8.4e-40 167.9 122 69.7
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 8.4e-40 167.9 139 65.5
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 8.4e-40 167.9 122 68.0
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.4e-40 167.9 122 68.9
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.4e-40 167.9 122 68.9
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.1e-39 167.5 122 64.8
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.9e-39 166.8 123 69.9
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.9e-39 166.8 123 69.1
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 2.4e-39 166.4 122 68.9
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 3.2e-39 166.0 122 66.4
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 3.2e-39 166.0 122 68.0
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 3.2e-39 166.0 131 64.1
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.4e-39 165.2 122 67.2
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 5.4e-39 165.2 122 63.9
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 7.1e-39 164.9 122 65.6
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 9.3e-39 164.5 123 69.1
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 9.3e-39 164.5 123 69.1
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 9.3e-39 164.5 122 67.2
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 9.3e-39 164.5 125 68.0
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 9.3e-39 164.5 160 55.6
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.2e-38 164.1 122 65.6
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 2.1e-38 163.3 122 66.4
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 7.8e-38 161.4 122 65.6
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 1.7e-37 160.2 122 64.8
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 2.3e-37 159.8 122 63.9
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.0e-37 159.5 148 58.8
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-36 157.1 148 58.1
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.9e-36 156.8 125 62.4
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.9e-36 156.8 122 64.8
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 5.6e-36 155.2 122 63.1
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 7.3e-36 154.8 125 61.6
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.3e-35 154.1 137 59.1
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.6e-35 153.7 123 62.6
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.6e-35 152.5 126 61.9
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 8.1e-35 151.4 146 60.3
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.5e-33 147.1 93 76.3
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 2.8e-27 126.3 117 59.8
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 2.0e-25 120.2 80 73.8
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.5e-25 119.0 120 57.5
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.8e-25 118.6 89 68.5
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.3e-24 117.5 82 73.2
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.7e-24 117.1 89 67.4
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 6.7e-21 105.1 122 48.4
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 5.6e-20 102.1 122 46.7
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.1e-19 100.1 122 46.7
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.2e-17 94.4 122 48.4
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 3.5e-14 82.8 58 72.4
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.1e-11 73.6 51 72.5
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 2.1e-11 73.6 68 60.3
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 3.1e-10 69.7 65 56.9
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.9e-08 63.2 45 71.1
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.4e-07 60.8 47 63.8


User provided reference genes

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