Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 3.9e-105 384.8 192 100.0
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 8.0e-34 147.9 168 49.4
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 8.8e-33 144.4 178 48.9
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.2e-32 144.1 172 49.4
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.5e-32 143.7 179 48.0
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.5e-32 143.7 171 48.5
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.0e-32 143.3 179 48.0
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.0e-32 143.3 162 50.6
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 3.3e-32 142.5 178 48.3
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 5.7e-32 141.7 159 49.7
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 5.7e-32 141.7 162 50.0
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.5e-32 141.4 182 47.8
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 7.5e-32 141.4 181 46.4
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 7.5e-32 141.4 178 47.2
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 7.5e-32 141.4 175 48.6
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 7.5e-32 141.4 167 49.1
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 7.5e-32 141.4 167 49.1
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 7.5e-32 141.4 160 48.8
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 7.5e-32 141.4 179 46.9
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 9.7e-32 141.0 172 47.1
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.3e-31 140.6 162 49.4
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.3e-31 140.6 171 48.5
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 1.3e-31 140.6 162 49.4
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.3e-31 140.6 172 47.1
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.7e-31 140.2 172 47.1
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 2.2e-31 139.8 174 45.4
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.2e-31 139.8 160 50.6
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.2e-31 139.8 173 47.4
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 2.2e-31 139.8 168 48.2
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 2.2e-31 139.8 162 49.4
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 2.2e-31 139.8 162 49.4
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.8e-31 139.4 177 46.3
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 2.8e-31 139.4 159 49.7
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.8e-31 139.4 177 45.2
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 2.8e-31 139.4 162 50.0
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.8e-31 139.4 173 47.4
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.7e-31 139.0 182 47.3
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 3.7e-31 139.0 172 46.5
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 4.8e-31 138.7 162 49.4
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 4.8e-31 138.7 180 45.0
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 4.8e-31 138.7 172 46.5
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.8e-31 138.7 159 49.7
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 4.8e-31 138.7 172 47.7
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.3e-31 138.3 179 46.9
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 6.3e-31 138.3 180 45.6
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 6.3e-31 138.3 180 45.6
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 8.2e-31 137.9 160 48.8
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 8.2e-31 137.9 180 46.1
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 8.2e-31 137.9 172 45.3
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 8.2e-31 137.9 179 46.4
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.1e-30 137.5 177 45.8
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.1e-30 137.5 172 47.1
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 1.1e-30 137.5 180 45.6
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.4e-30 137.1 159 49.7
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 1.8e-30 136.7 180 44.4
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 2.4e-30 136.3 177 44.6
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 3.1e-30 136.0 177 44.1
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.1e-30 136.0 168 45.8
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 3.1e-30 136.0 168 47.0
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.1e-30 135.6 162 48.8
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 4.1e-30 135.6 168 45.8
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 4.1e-30 135.6 162 47.5
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.1e-30 135.6 177 44.6
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 4.1e-30 135.6 163 48.5
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 5.3e-30 135.2 160 49.4
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 5.3e-30 135.2 179 43.6
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 5.3e-30 135.2 168 47.6
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.3e-30 135.2 162 46.9
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.3e-30 135.2 162 46.9
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 7.0e-30 134.8 180 45.6
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 7.0e-30 134.8 168 47.6
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 9.1e-30 134.4 168 45.2
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 9.1e-30 134.4 178 44.4
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 9.1e-30 134.4 168 47.6
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 9.1e-30 134.4 180 45.6
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 9.1e-30 134.4 175 44.6
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.2e-29 134.0 175 45.1
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.2e-29 134.0 163 47.9
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.2e-29 134.0 172 45.9
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.2e-29 134.0 168 47.0
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.2e-29 134.0 179 44.7
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.6e-29 133.7 175 44.6
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.6e-29 133.7 175 44.6
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 1.6e-29 133.7 168 45.2
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.6e-29 133.7 160 47.5
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.6e-29 133.7 180 43.3
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 2.0e-29 133.3 177 44.1
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.0e-29 133.3 168 45.8
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 2.0e-29 133.3 180 45.6
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 2.0e-29 133.3 160 45.6
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.0e-29 133.3 162 46.9
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 2.7e-29 132.9 175 44.6
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 3.5e-29 132.5 162 46.3
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 3.5e-29 132.5 172 45.3
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 3.5e-29 132.5 172 43.6
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 3.5e-29 132.5 172 44.2
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 4.5e-29 132.1 180 43.9
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 4.5e-29 132.1 180 43.9
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 4.5e-29 132.1 180 43.3
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 5.9e-29 131.7 180 42.8
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 7.7e-29 131.3 168 45.2
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 7.7e-29 131.3 180 43.9
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 7.7e-29 131.3 172 44.2
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.0e-28 131.0 179 44.7
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.0e-28 131.0 181 42.5
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.0e-28 131.0 168 46.4
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.3e-28 130.6 171 46.2
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.7e-28 130.2 160 45.0
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.7e-28 130.2 161 47.8
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 2.2e-28 129.8 160 44.4
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 2.2e-28 129.8 160 44.4
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 2.2e-28 129.8 161 47.8
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 2.9e-28 129.4 160 43.8
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 3.8e-28 129.0 159 44.7
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 5.0e-28 128.6 178 42.7
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 5.0e-28 128.6 178 42.7
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 5.0e-28 128.6 170 44.1
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 8.5e-28 127.9 168 44.0
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 8.5e-28 127.9 178 42.7
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.1e-27 127.5 168 45.2
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.1e-27 127.5 172 44.2
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 2.5e-27 126.3 185 42.7
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 7.2e-27 124.8 159 45.9
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 7.2e-27 124.8 185 42.2
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.6e-26 123.6 185 40.5
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 8.0e-26 121.3 186 41.4
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.4e-25 120.6 168 41.7
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.4e-25 120.6 168 40.5
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.8e-25 120.2 179 43.0
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 2.3e-25 119.8 161 41.0
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 2.0e-24 116.7 162 41.4
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.2e-18 97.4 110 46.4
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 8.0e-18 94.7 175 36.6
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.4e-17 94.0 94 55.3
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 8.9e-17 91.3 84 56.0
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 2.0e-16 90.1 150 39.3
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.7e-12 77.0 162 32.7
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.6e-10 70.5 46 65.2
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.4e-09 67.4 159 30.8
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 8.9e-09 64.7 165 29.1
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 9.8e-08 61.2 53 54.7
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.7e-07 60.5 160 30.0
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 6.4e-07 58.5 86 44.2


User provided reference genes

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