Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 2.5e-181 638.6 322 100.0
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 5.5e-104 381.7 306 65.7
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 7.9e-103 377.9 296 65.5
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 3.9e-102 375.6 295 64.4
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 6.7e-102 374.8 297 64.0
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 2.0e-101 373.2 297 66.0
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 3.3e-101 372.5 297 65.0
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 5.7e-101 371.7 296 63.5
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 9.7e-101 370.9 314 62.1
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 1.7e-100 370.2 293 64.8
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 1.7e-100 370.2 289 65.1
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 1.7e-100 370.2 293 64.5
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 1.4e-99 367.1 300 63.3
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 1.8e-99 366.7 312 60.9
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 1.8e-99 366.7 301 62.8
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 3.1e-99 365.9 301 62.8
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 5.3e-99 365.2 297 62.6
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 7.0e-99 364.8 302 61.6
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 7.0e-99 364.8 294 63.9
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 1.2e-98 364.0 302 61.9
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 1.6e-98 363.6 288 63.5
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 1.6e-98 363.6 312 60.6
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 2.0e-98 363.2 305 62.6
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 2.6e-98 362.8 262 68.3
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 3.5e-98 362.5 298 61.7
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 3.5e-98 362.5 297 62.6
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 7.7e-98 361.3 296 63.9
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 7.7e-98 361.3 312 61.5
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 1.0e-97 360.9 287 63.1
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 1.0e-97 360.9 293 62.1
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 1.0e-97 360.9 293 62.5
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 1.0e-97 360.9 257 70.0
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.3e-97 360.5 294 65.0
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 1.7e-97 360.1 302 62.6
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 2.2e-97 359.8 291 63.9
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 2.2e-97 359.8 306 61.8
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 2.9e-97 359.4 295 65.1
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 2.9e-97 359.4 303 59.4
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 3.8e-97 359.0 297 62.0
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 3.8e-97 359.0 304 61.5
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 3.8e-97 359.0 298 62.4
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 5.0e-97 358.6 293 61.8
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 5.0e-97 358.6 305 61.3
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 6.5e-97 358.2 293 62.5
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 6.5e-97 358.2 293 61.4
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 1.1e-96 357.5 296 61.1
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 1.1e-96 357.5 311 59.2
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 1.1e-96 357.5 290 64.1
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 1.5e-96 357.1 293 62.1
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 1.5e-96 357.1 298 60.4
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 2.5e-96 356.3 293 61.4
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 2.5e-96 356.3 295 63.4
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.5e-96 356.3 301 61.8
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 3.2e-96 355.9 299 59.9
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 3.2e-96 355.9 300 60.7
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 3.2e-96 355.9 296 61.5
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 4.2e-96 355.5 257 67.3
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 5.5e-96 355.1 293 62.5
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 5.5e-96 355.1 301 59.5
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 1.2e-95 354.0 260 68.1
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.2e-95 354.0 300 60.3
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 2.7e-95 352.8 306 59.2
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 3.6e-95 352.4 302 59.9
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 3.6e-95 352.4 289 61.6
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 3.6e-95 352.4 262 68.3
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 4.7e-95 352.1 302 58.9
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 4.7e-95 352.1 332 57.2
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 1.0e-94 350.9 302 59.6
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.4e-94 350.5 300 60.0
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 4.0e-94 349.0 302 58.6
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 6.7e-94 348.2 267 64.4
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 6.7e-94 348.2 257 66.1
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 8.8e-94 347.8 257 65.4
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 1.5e-93 347.1 257 66.9
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 2.0e-93 346.7 257 66.5
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 2.0e-93 346.7 257 65.8
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 5.7e-93 345.1 295 60.7
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 1.7e-92 343.6 257 66.9
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 6.3e-92 341.7 289 60.6
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 8.2e-92 341.3 265 64.2
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 1.8e-91 340.1 283 60.1
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 2.4e-91 339.7 296 59.1
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 5.3e-91 338.6 265 63.4
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 5.3e-91 338.6 265 63.4
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 5.3e-91 338.6 252 65.9
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 9.1e-91 337.8 313 55.6
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 1.6e-90 337.0 281 62.3
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 5.9e-90 335.1 265 63.0
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 5.9e-90 335.1 302 58.9
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 7.7e-90 334.7 303 58.7
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 2.2e-89 333.2 270 60.7
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 3.8e-89 332.4 257 62.6
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 8.5e-89 331.3 257 65.4
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 1.5e-88 330.5 275 59.6
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 7.2e-88 328.2 259 62.9
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 1.2e-87 327.4 334 51.8
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.8e-86 323.6 334 53.9
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 8.8e-86 321.2 274 62.0
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 1.5e-85 320.5 235 66.4
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 2.0e-85 320.1 233 68.7
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 2.6e-85 319.7 233 66.5
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 4.4e-85 318.9 358 48.6
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 5.4e-83 312.0 253 64.0
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 7.0e-83 311.6 255 62.0
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 6.8e-78 295.0 253 62.5
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 2.7e-74 283.1 271 52.4
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.1e-72 277.7 207 67.6
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 1.9e-72 276.9 261 55.6
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.6e-71 273.9 297 49.2
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 3.6e-71 272.7 209 64.6
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 4.4e-69 265.8 210 63.3
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 1.1e-67 261.2 269 51.7
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 2.5e-64 250.0 211 60.7
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 8.0e-63 245.0 275 50.5
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.2e-61 241.1 208 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 4.4e-61 239.2 257 51.0
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 4.4e-61 239.2 276 48.6
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.9e-56 223.8 234 54.3
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 2.5e-56 223.4 220 55.5
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 2.3e-54 216.9 205 60.5
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 1.2e-53 214.5 294 42.9
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 2.0e-53 213.8 302 39.7
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 2.0e-53 213.8 179 59.8
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 3.7e-52 209.5 166 62.0
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 4.9e-52 209.1 291 43.3
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.9e-51 207.2 167 62.3
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 2.5e-48 196.8 183 54.6
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 3.4e-45 186.4 130 66.2
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.9e-44 183.3 130 64.6
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 8.4e-44 181.8 262 40.8
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 5.4e-43 179.1 260 41.2
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 1.0e-41 174.9 145 60.0
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 9.6e-40 168.3 278 39.2
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.1e-38 164.9 134 63.4
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.2e-37 161.4 132 62.9
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 2.6e-37 160.2 232 39.2
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 3.5e-34 149.8 129 58.9
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.8e-30 137.5 301 33.2
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 6.9e-30 135.6 85 74.1
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.3e-28 131.3 144 52.1
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 5.4e-27 125.9 141 51.1
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 3.3e-24 116.7 153 47.1
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 9.9e-21 105.1 86 58.1
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 1.3e-17 94.7 84 56.0
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 2.8e-07 60.5 114 33.3


User provided reference genes

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