Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 1.1e-300 1035.8 523 100.0
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 2.2e-158 563.1 532 56.0
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 7.0e-157 558.1 531 54.4
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 5.9e-156 555.1 532 55.5
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 2.5e-154 549.7 547 55.0
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 1.6e-153 547.0 532 55.5
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 1.4e-152 543.9 532 55.3
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 2.0e-151 540.0 532 53.8
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 7.5e-151 538.1 532 53.8
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 1.7e-150 537.0 532 53.6
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 1.7e-150 537.0 552 52.4
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 3.7e-150 535.8 531 53.7
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 1.1e-149 534.3 550 52.9
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.4e-149 533.1 533 53.8
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 4.1e-149 532.3 531 53.9
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 2.7e-148 529.6 531 53.7
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 1.0e-147 527.7 529 52.7
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 3.8e-147 525.8 532 51.5
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 1.9e-146 523.5 534 51.9
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 2.5e-146 523.1 532 53.8
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 3.2e-146 522.7 531 52.2
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 4.2e-146 522.3 533 53.7
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 4.2e-146 522.3 531 53.9
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 5.5e-146 521.9 536 53.5
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 9.4e-146 521.2 539 52.7
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 2.1e-145 520.0 533 52.7
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 2.7e-145 519.6 532 53.0
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 8.0e-145 518.1 534 52.1
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 8.0e-145 518.1 530 52.6
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.0e-144 517.7 531 52.5
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 1.8e-144 516.9 531 52.5
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 1.8e-144 516.9 534 51.5
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 4.0e-144 515.8 532 51.7
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 4.4e-143 512.3 570 50.0
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 2.8e-142 509.6 542 50.2
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 3.7e-142 509.2 533 51.6
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 1.4e-141 507.3 532 51.5
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 4.1e-141 505.8 541 52.1
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 5.4e-141 505.4 529 52.6
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 9.1e-141 504.6 531 52.7
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 9.1e-141 504.6 537 49.7
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 1.0e-139 501.1 534 49.8
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 2.9e-139 499.6 537 50.3
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 2.9e-139 499.6 533 49.3
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 3.8e-139 499.2 533 51.2
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 3.8e-139 499.2 534 50.0
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 6.5e-139 498.4 533 49.7
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 8.6e-139 498.0 537 49.0
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 1.1e-138 497.7 532 50.2
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 1.9e-138 496.9 536 50.0
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 1.9e-138 496.9 543 49.9
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 1.9e-138 496.9 535 50.5
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 7.2e-138 495.0 527 50.1
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 9.5e-138 494.6 534 50.4
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 2.1e-137 493.4 567 46.9
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 2.8e-137 493.0 529 49.3
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 3.6e-137 492.7 536 50.4
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 1.0e-136 491.1 537 49.2
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 1.4e-136 490.7 534 49.1
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 5.2e-136 488.8 536 49.1
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 6.8e-136 488.4 533 50.5
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 1.5e-135 487.3 533 49.2
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 2.0e-135 486.9 542 50.0
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 2.0e-135 486.9 518 50.2
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 7.5e-135 485.0 534 48.9
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 7.5e-135 485.0 510 52.7
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 9.8e-135 484.6 532 50.2
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 9.8e-135 484.6 533 49.9
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 1.3e-134 484.2 532 49.1
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.3e-134 484.2 560 49.5
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 1.3e-134 484.2 533 49.7
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 2.8e-134 483.0 529 49.5
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 6.3e-134 481.9 531 49.3
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 8.3e-134 481.5 521 50.1
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 5.4e-133 478.8 538 49.3
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 1.2e-132 477.6 531 49.3
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 1.2e-132 477.6 531 49.3
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 1.2e-132 477.6 536 49.3
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.2e-132 477.6 541 49.5
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 4.5e-132 475.7 531 49.0
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 1.0e-131 474.6 548 48.2
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 2.3e-131 473.4 512 49.8
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 2.0e-127 460.3 483 53.0
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 2.6e-127 459.9 602 43.9
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 9.2e-125 451.4 554 48.0
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 3.5e-124 449.5 525 48.4
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 4.6e-124 449.1 489 49.1
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 3.9e-123 446.0 481 50.7
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 3.3e-122 443.0 450 54.0
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 8.0e-121 438.3 541 44.9
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 8.9e-120 434.9 459 51.6
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 5.8e-119 432.2 617 43.4
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 1.9e-117 427.2 452 52.2
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 2.9e-110 403.3 529 43.9
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 1.4e-109 401.0 480 47.5
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 4.3e-106 389.4 554 41.7
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 4.7e-105 386.0 482 43.6
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 2.1e-97 360.5 384 50.3
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 6.4e-94 349.0 537 39.1
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 1.2e-92 344.7 398 50.5
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 7.3e-90 335.5 544 38.4
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 3.1e-88 330.1 339 51.9
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 2.5e-82 310.5 325 52.6
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 8.7e-75 285.4 402 41.3
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 3.3e-74 283.5 377 46.7
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 4.8e-73 279.6 438 41.3
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 1.1e-72 278.5 333 44.1
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 4.6e-68 263.1 450 38.2
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 4.6e-60 236.5 470 35.7
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 4.6e-60 236.5 341 41.6
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 9.7e-58 228.8 225 53.3
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 1.4e-56 224.9 289 45.3
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 3.8e-54 216.9 217 54.4
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 3.0e-51 207.2 232 46.6
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 9.7e-50 202.2 414 35.7
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 9.7e-50 202.2 163 60.1
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 7.0e-48 196.1 547 31.1
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 4.8e-41 173.3 136 59.6
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 4.0e-35 153.7 155 53.5
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 5.7e-34 149.8 130 60.8
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 5.7e-34 149.8 130 60.8
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 3.2e-29 134.0 505 26.9
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 9.5e-21 105.9 192 37.0
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 4.0e-19 100.5 60 70.0
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 3.4e-18 97.4 98 51.0
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 1.1e-16 92.4 53 71.7
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.8e-16 91.7 57 70.2
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 3.2e-16 90.9 55 69.1
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 4.5e-15 87.0 221 31.7
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.3e-13 79.7 65 55.4
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 9.5e-13 79.3 104 41.3
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 9.5e-13 79.3 104 41.3
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 2.2e-09 68.2 65 53.8


User provided reference genes

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