Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 2.4e-127 458.8 215 100.0
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 5.1e-90 334.7 215 75.3
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 3.7e-88 328.6 215 74.0
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 5.9e-86 321.2 214 73.4
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 1.0e-85 320.5 217 72.4
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 3.8e-85 318.5 215 72.1
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 5.5e-84 314.7 217 71.0
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 5.5e-84 314.7 217 71.0
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 1.6e-83 313.2 215 71.2
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 2.7e-83 312.4 215 72.6
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 2.7e-83 312.4 215 71.2
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 3.6e-83 312.0 215 71.2
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 8.0e-83 310.8 215 71.6
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 8.0e-83 310.8 215 72.1
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 8.0e-83 310.8 215 72.1
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 8.0e-83 310.8 215 69.8
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 1.4e-82 310.1 216 70.8
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 4.0e-82 308.5 213 72.3
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 4.0e-82 308.5 215 71.6
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 4.0e-82 308.5 215 71.2
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 4.0e-82 308.5 217 70.5
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 6.7e-82 307.8 214 71.0
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 1.5e-81 306.6 219 69.4
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 2.0e-81 306.2 217 69.1
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 2.0e-81 306.2 217 68.2
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 2.6e-81 305.8 217 70.5
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 5.7e-81 304.7 211 71.6
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 7.5e-81 304.3 214 67.3
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 7.5e-81 304.3 215 71.2
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 7.5e-81 304.3 214 69.6
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 7.5e-81 304.3 213 71.4
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 9.7e-81 303.9 213 71.4
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 9.7e-81 303.9 217 68.7
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 2.2e-80 302.8 217 69.6
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 2.8e-80 302.4 215 69.8
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 2.8e-80 302.4 215 70.7
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 6.3e-80 301.2 221 69.2
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 8.2e-80 300.8 209 69.9
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 8.2e-80 300.8 213 69.5
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 8.2e-80 300.8 217 67.7
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 1.1e-79 300.4 210 68.1
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 1.1e-79 300.4 215 69.3
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 1.4e-79 300.1 216 69.9
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 1.4e-79 300.1 215 68.4
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 1.8e-79 299.7 215 70.7
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 1.8e-79 299.7 216 67.1
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.8e-79 299.7 217 66.8
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 1.8e-79 299.7 215 67.9
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 1.8e-79 299.7 213 68.5
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 2.4e-79 299.3 213 70.4
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 2.4e-79 299.3 213 69.0
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.1e-79 298.5 217 66.8
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 4.1e-79 298.5 214 67.3
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 4.1e-79 298.5 214 67.3
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 4.1e-79 298.5 213 68.1
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 5.3e-79 298.1 213 70.4
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 7.0e-79 297.7 212 67.5
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 1.2e-78 297.0 215 69.8
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 1.2e-78 297.0 212 68.9
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 1.2e-78 297.0 212 68.9
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 2.0e-78 296.2 215 70.2
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 2.7e-78 295.8 217 69.1
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 2.7e-78 295.8 213 67.1
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 2.7e-78 295.8 215 67.4
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 4.5e-78 295.0 218 69.3
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 4.5e-78 295.0 214 66.8
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 5.9e-78 294.7 213 69.5
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 7.7e-78 294.3 214 66.8
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 7.7e-78 294.3 213 69.5
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 1.7e-77 293.1 214 67.8
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 1.7e-77 293.1 212 67.9
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 1.7e-77 293.1 230 65.2
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 2.2e-77 292.7 214 65.9
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 3.8e-77 292.0 213 67.6
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 6.5e-77 291.2 204 70.6
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 8.5e-77 290.8 213 68.5
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 8.5e-77 290.8 213 68.5
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 8.5e-77 290.8 214 69.2
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 1.1e-76 290.4 213 68.1
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 1.5e-76 290.0 213 69.0
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 1.9e-76 289.7 213 68.5
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 2.5e-76 289.3 213 68.1
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 2.5e-76 289.3 213 68.1
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 7.2e-76 287.7 212 67.0
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 7.2e-76 287.7 198 73.2
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 1.0e-74 283.9 182 73.6
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 1.0e-74 283.9 200 70.5
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 6.8e-74 281.2 213 64.8
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 3.4e-73 278.9 168 74.4
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 8.3e-72 274.2 201 69.2
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 5.4e-71 271.6 175 68.6
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 5.4e-71 271.6 205 65.4
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 2.0e-70 269.6 217 63.6
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 3.5e-70 268.9 173 71.1
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 3.8e-69 265.4 167 71.3
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 1.5e-68 263.5 204 66.2
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 1.2e-67 260.4 211 62.1
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 1.0e-66 257.3 194 60.8
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 5.2e-66 255.0 189 65.6
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 1.3e-64 250.4 180 68.9
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 2.2e-64 249.6 167 68.3
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 1.6e-62 243.4 144 77.8
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 3.5e-62 242.3 147 76.9
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 1.5e-60 236.9 175 67.4
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 4.9e-56 221.9 176 57.4
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.8e-51 206.1 263 46.8
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 1.8e-50 203.4 152 65.1
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 1.3e-48 197.2 148 66.2
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 8.3e-48 194.5 148 64.9
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 5.4e-47 191.8 177 49.2
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 6.0e-46 188.3 163 58.9
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 5.4e-39 165.2 103 74.8
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 5.2e-34 148.7 196 43.4
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 1.1e-26 124.4 66 83.3
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 5.2e-26 122.1 83 66.3
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 9.3e-23 111.3 87 57.5
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 5.1e-21 105.5 59 78.0
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 1.5e-20 104.0 74 64.9
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 3.6e-19 99.4 66 69.7
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 6.4e-08 62.0 142 28.2
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 8.4e-08 61.6 142 28.2
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 8.4e-08 61.6 142 28.2
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.9e-07 60.5 142 27.5
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 9.3e-07 58.2 142 28.2
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.2e-06 57.8 142 26.8
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.6e-06 57.4 142 29.6
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.6e-06 57.4 142 29.6
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.1e-06 57.0 142 29.6
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 2.7e-06 56.6 142 28.2
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 6.0e-06 55.5 142 26.1


User provided reference genes

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