Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00311 Sapria himalayana HOM05D001137 ORTHO05D005066 5.9e-100 367.5 178 100.0
Potri.010G022000 Populus trichocarpa HOM05D001137 ORTHO05D005066 4.4e-10 68.9 39 79.5
arahy.Tifrunner.gnm1.ann1.SGL9NF Arachis hypogaea HOM05D001137 ORTHO05D005066 5.7e-10 68.6 62 58.1
VMungo0375G0001 Vigna mungo HOM05D001137 ORTHO05D005066 5.7e-10 68.6 39 79.5
Glyma.15G096200 Glycine max HOM05D001137 ORTHO05D005066 9.7e-10 67.8 39 79.5
Potri.008G214900 Populus trichocarpa HOM05D001137 ORTHO05D005066 1.3e-09 67.4 39 76.9
arahy.Tifrunner.gnm1.ann1.S97PWN Arachis hypogaea HOM05D001137 ORTHO05D005066 1.7e-09 67.0 62 56.5
Nn3g21353 Nelumbo nucifera HOM05D001137 ORTHO05D005066 1.7e-09 67.0 62 58.1
ECA248G1543 Erigeron canadensis HOM05D001137 ORTHO05D005066 2.2e-09 66.6 39 74.4
Manes.15G015400 Manihot esculenta HOM05D001137 ORTHO05D005066 2.2e-09 66.6 62 56.5
Glyma.03G112050 Glycine max HOM05D001137 ORTHO05D005066 2.8e-09 66.2 39 74.4
Glyma.13G216400 Glycine max HOM05D001137 ORTHO05D005066 2.8e-09 66.2 39 74.4
Phvul.006G162800 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 2.8e-09 66.2 39 76.9
Psat4g027640 Pisum sativum HOM05D001137 ORTHO05D005066 2.8e-09 66.2 62 58.1
Atru.chr4.2781 Acer truncatum HOM05D001137 ORTHO05D005066 3.7e-09 65.9 39 79.5
Psat1g187920 Pisum sativum HOM05D001137 ORTHO05D005066 3.7e-09 65.9 39 74.4
arahy.Tifrunner.gnm1.ann1.GKEN9S Arachis hypogaea HOM05D001137 ORTHO05D005066 4.8e-09 65.5 39 76.9
arahy.Tifrunner.gnm1.ann1.HMK9CN Arachis hypogaea HOM05D001137 ORTHO05D005066 4.8e-09 65.5 39 76.9
Ca_00560_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 4.8e-09 65.5 39 74.4
Glyma.17G024000 Glycine max HOM05D001137 ORTHO05D005066 4.8e-09 65.5 39 76.9
Lalb_Chr18g0055631 Lupinus albus HOM05D001137 ORTHO05D005066 4.8e-09 65.5 39 76.9
Manes.03G192200 Manihot esculenta HOM05D001137 ORTHO05D005066 6.3e-09 65.1 39 74.4
Nn4g25962 Nelumbo nucifera HOM05D001137 ORTHO05D005066 6.3e-09 65.1 62 56.5
TPR.G14624 Trifolium pratense HOM05D001137 ORTHO05D005066 6.3e-09 65.1 62 56.5
Ciclev10004439m.g Citrus clementina HOM05D001137 ORTHO05D005066 8.2e-09 64.7 39 76.9
Cc03_g02170 Coffea canephora HOM05D001137 ORTHO05D005066 8.2e-09 64.7 39 71.8
QL06p007709 Quercus lobata HOM05D001137 ORTHO05D005066 8.2e-09 64.7 39 74.4
CAN.G580.11 Capsicum annuum HOM05D001137 ORTHO05D005066 1.1e-08 64.3 62 54.8
Duzib151G0891 Durio zibethinus HOM05D001137 ORTHO05D005066 1.1e-08 64.3 62 54.8
Lsat_1_v5_gn_5_157341 Lactuca sativa HOM05D001137 ORTHO05D005066 1.1e-08 64.3 39 69.2
Cpa.g.sc1214.1 Carica papaya HOM05D001137 ORTHO05D005066 1.4e-08 63.9 62 56.5
Duzib212G0615 Durio zibethinus HOM05D001137 ORTHO05D005066 1.4e-08 63.9 62 54.8
FAN07G1649 Fragaria x ananassa HOM05D001137 ORTHO05D005066 1.4e-08 63.9 39 76.9
FAN17G0634 Fragaria x ananassa HOM05D001137 ORTHO05D005066 1.4e-08 63.9 39 76.9
Lj4g0021111 Lotus japonicus HOM05D001137 ORTHO05D005066 1.4e-08 63.9 39 74.4
MD16G1173400 Malus domestica HOM05D001137 ORTHO05D005066 1.4e-08 63.9 39 76.9
Prupe.1G140300 Prunus persica HOM05D001137 ORTHO05D005066 1.4e-08 63.9 39 76.9
Aqoxy2G03075 Aquilegia oxysepala HOM05D001137 ORTHO05D005066 1.8e-08 63.5 39 69.2
MELO3C006622.2 Cucumis melo HOM05D001137 ORTHO05D005066 1.8e-08 63.5 39 74.4
CsaV3_3G014290 Cucumis sativus L. HOM05D001137 ORTHO05D005066 1.8e-08 63.5 39 74.4
Gohir.A09G240400 Gossypium hirsutum HOM05D001137 ORTHO05D005066 1.8e-08 63.5 39 69.2
HanXRQChr01g0008171 Helianthus annuus HOM05D001137 ORTHO05D005066 1.8e-08 63.5 39 69.2
Medtr4g119100 Medicago truncatula HOM05D001137 ORTHO05D005066 1.8e-08 63.5 62 54.8
Nn1g08126 Nelumbo nucifera HOM05D001137 ORTHO05D005066 1.8e-08 63.5 39 74.4
Sabra08G0155800 Salix brachista HOM05D001137 ORTHO05D005066 1.8e-08 63.5 39 74.4
TWI73G0988 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 1.8e-08 63.5 39 74.4
CSS0008512 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 2.4e-08 63.2 62 53.2
CSS0028405 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 2.4e-08 63.2 62 53.2
CANSAT78G1005 Cannabis sativa HOM05D001137 ORTHO05D005066 2.4e-08 63.2 39 71.8
Gohir.D09G241100 Gossypium hirsutum HOM05D001137 ORTHO05D005066 2.4e-08 63.2 39 69.2
Gorai.006G264600 Gossypium raimondii HOM05D001137 ORTHO05D005066 2.4e-08 63.2 39 69.2
Lj6g0014210 Lotus japonicus HOM05D001137 ORTHO05D005066 2.4e-08 63.2 62 56.5
Phvul.003G102100 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 2.4e-08 63.2 39 74.4
VMungo1215G0971 Vigna mungo HOM05D001137 ORTHO05D005066 2.4e-08 63.2 39 74.4
Rhsim04G0218100 Rhododendron simsii HOM05D001137 ORTHO05D005066 3.1e-08 62.8 59 57.6
Eucgr.H03862 Eucalyptus grandis HOM05D001137 ORTHO05D005066 4.1e-08 62.4 39 74.4
Nitab4.5_0000829g0190 Nicotiana tabacum HOM05D001137 ORTHO05D005066 4.1e-08 62.4 41 68.3
Peaxi162Scf00386g00616 Petunia axillaris HOM05D001137 ORTHO05D005066 4.1e-08 62.4 41 68.3
Solyc01g067480.4 Solanum lycopersicum HOM05D001137 ORTHO05D005066 4.1e-08 62.4 41 68.3
Sopen01g029390 Solanum pennellii HOM05D001137 ORTHO05D005066 4.1e-08 62.4 41 68.3
PGSC0003DMG402022673 Solanum tuberosum HOM05D001137 ORTHO05D005066 4.1e-08 62.4 41 68.3
CiPaw.01G151600 Carya illinoinensis HOM05D001137 ORTHO05D005066 5.3e-08 62.0 39 71.8
ClCG00G003670 Citrullus lanatus HOM05D001137 ORTHO05D005066 5.3e-08 62.0 39 71.8
ClCG05G005910 Citrullus lanatus HOM05D001137 ORTHO05D005066 5.3e-08 62.0 39 71.8
Medtr2g019860 Medicago truncatula HOM05D001137 ORTHO05D005066 5.3e-08 62.0 39 71.8
RcHm_v2.0_Chr4g0421431 Rosa chinensis HOM05D001137 ORTHO05D005066 5.3e-08 62.0 39 74.4
TPR.G1509 Trifolium pratense HOM05D001137 ORTHO05D005066 5.3e-08 62.0 39 71.8
FvH4_4g17510 Fragaria vesca HOM05D001137 ORTHO05D005066 7.0e-08 61.6 39 74.4
FAN12G2086 Fragaria x ananassa HOM05D001137 ORTHO05D005066 7.0e-08 61.6 39 74.4
Sc13g0003550 Simmondsia chinensis HOM05D001137 ORTHO05D005066 7.0e-08 61.6 39 71.8
TWI09G0222 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 7.0e-08 61.6 39 69.2
DCAR_030541 Daucus carota HOM05D001137 ORTHO05D005066 9.1e-08 61.2 39 69.2
vmacro22477 Vaccinium macrocarpon HOM05D001137 ORTHO05D005066 9.1e-08 61.2 62 53.2
Glyma.07G250400 Glycine max HOM05D001137 ORTHO05D005066 1.2e-07 60.8 39 71.8
Sed0010501 Sechium edule HOM05D001137 ORTHO05D005066 1.2e-07 60.8 39 69.2
TAR355G0001 Trochodendron aralioides HOM05D000116 ORTHO05D000133 1.2e-07 60.8 39 69.2
Carub.0006s1687 Capsella rubella HOM05D001137 ORTHO05D005066 1.6e-07 60.5 39 69.2
Hma1.2p1_0698F.1_g205450 Hydrangea macrophylla HOM05D001137 ORTHO05D005066 1.6e-07 60.5 39 69.2
PGR004G0465 Punica granatum HOM05D001137 ORTHO05D005066 1.6e-07 60.5 39 71.8
Thecc.04G279600 Theobroma cacao HOM05D001137 ORTHO05D005066 1.6e-07 60.5 39 69.2
Ca_21530_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 2.0e-07 60.1 39 71.8
Ca_21539_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 2.0e-07 60.1 39 71.8
TAR362G1170 Trochodendron aralioides HOM05D001137 ORTHO05D005066 2.0e-07 60.1 62 53.2
Aa31LG11G11030 Aethionema arabicum HOM05D001137 ORTHO05D005066 2.6e-07 59.7 62 51.6
CARHR194430 Cardamine hirsuta HOM05D001137 ORTHO05D005066 3.5e-07 59.3 39 69.2
Migut.G00190 Erythranthe guttata HOM05D001137 ORTHO05D005066 3.5e-07 59.3 39 66.7
SalBow2G1809 Salvia bowleyana HOM05D001137 ORTHO05D005066 3.5e-07 59.3 39 66.7
Sp6g25740 Schrenkiella parvula HOM05D001137 ORTHO05D005066 3.5e-07 59.3 39 69.2
Sed0020296 Sechium edule HOM05D001137 ORTHO05D005066 3.5e-07 59.3 39 66.7
THA.LOC104802721 Tarenaya hassleriana HOM05D001137 ORTHO05D005066 3.5e-07 59.3 39 69.2
GSVIVG01017784001 Vitis vinifera HOM05D001137 ORTHO05D005066 3.5e-07 59.3 39 66.7
MSTRG.3938 Avicennia marina HOM05D001137 ORTHO05D005066 4.5e-07 58.9 39 66.7
PSO170G4147 Papaver somniferum HOM05D001137 ORTHO05D005066 4.5e-07 58.9 37 70.3
PSO210G1694 Papaver somniferum HOM05D001137 ORTHO05D005066 4.5e-07 58.9 37 70.3
TAR365G1163 Trochodendron aralioides HOM05D001137 ORTHO05D005066 4.5e-07 58.9 39 69.2
Actinidia01942 Actinidia chinensis HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 66.7
Ah.08g211130 Amaranthus hybridus HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 64.1
EL10Ac7g16750 Beta vulgaris HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 64.1
BcaB08g36660 Brassica carinata HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 66.7
BcaC04g18664 Brassica carinata HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 66.7
A10p20970 Brassica napus HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 66.7
C09p57890 Brassica napus HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 66.7
BolC9t58657H Brassica oleracea HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 66.7
BraA10t44162Z Brassica rapa HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 66.7
Gohir.A10G161500 Gossypium hirsutum HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 66.7
Gohir.D10G168000 Gossypium hirsutum HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 66.7
Gorai.011G187500 Gossypium raimondii HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 66.7
SGA_v2.0_scaffold86G26927 Striga asiatica HOM05D001137 ORTHO05D005066 5.9e-07 58.5 39 66.7
AUR62027452 Chenopodium quinoa HOM05D001137 ORTHO05D005066 1.0e-06 57.8 39 61.5
AUR62031245 Chenopodium quinoa HOM05D001137 ORTHO05D005066 1.0e-06 57.8 39 61.5
Thhalv10012828m.g Eutrema salsugineum HOM05D001137 ORTHO05D005066 1.0e-06 57.8 39 66.7
HanXRQChr13g0388221 Helianthus annuus HOM05D001137 ORTHO05D005066 1.0e-06 57.8 39 61.5
Oeu029261.1 Olea europaea HOM05D001137 ORTHO05D005066 1.0e-06 57.8 62 50.0
Hund24915 Selenicereus undatus HOM05D001137 ORTHO05D005066 1.3e-06 57.4 35 68.6
Dinv38313 Davidia involucrata HOM05D001137 ORTHO05D005066 1.7e-06 57.0 40 67.5
Ca_21531_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 2.2e-06 56.6 35 74.3
AL6G29860 Arabidopsis lyrata HOM05D001137 ORTHO05D005066 2.9e-06 56.2 39 66.7
AT5G18590 Arabidopsis thaliana HOM05D001137 ORTHO05D005066 2.9e-06 56.2 39 66.7
MBI18_g01977_MAGBIO Magnolia biondii HOM05D001137 ORTHO05D005066 5.0e-06 55.5 62 46.8


User provided reference genes

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