Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00310 Sapria himalayana HOM05D001137 ORTHO05D005066 1.1e-103 379.8 176 100.0
Cpa.g.sc1214.1 Carica papaya HOM05D001137 ORTHO05D005066 2.5e-26 122.9 116 55.2
Manes.15G015400 Manihot esculenta HOM05D001137 ORTHO05D005066 6.2e-25 118.2 106 57.5
Prupe.1G140300 Prunus persica HOM05D001137 ORTHO05D005066 1.8e-24 116.7 114 53.5
Ciclev10004439m.g Citrus clementina HOM05D001137 ORTHO05D005066 3.1e-24 115.9 116 51.7
Potri.010G022000 Populus trichocarpa HOM05D001137 ORTHO05D005066 3.1e-24 115.9 119 54.6
Sabra08G0155800 Salix brachista HOM05D001137 ORTHO05D005066 6.9e-24 114.8 116 55.2
Manes.03G192200 Manihot esculenta HOM05D001137 ORTHO05D005066 9.0e-24 114.4 106 55.7
Thecc.04G279600 Theobroma cacao HOM05D001137 ORTHO05D005066 9.0e-24 114.4 116 50.9
Atru.chr4.2781 Acer truncatum HOM05D001137 ORTHO05D005066 2.0e-23 113.2 115 53.0
Duzib151G0891 Durio zibethinus HOM05D001137 ORTHO05D005066 2.6e-23 112.8 116 50.9
MD16G1173400 Malus domestica HOM05D001137 ORTHO05D005066 4.4e-23 112.1 114 52.6
CiPaw.01G151600 Carya illinoinensis HOM05D001137 ORTHO05D005066 5.8e-23 111.7 114 52.6
Duzib212G0615 Durio zibethinus HOM05D001137 ORTHO05D005066 9.9e-23 110.9 116 50.9
Potri.008G214900 Populus trichocarpa HOM05D001137 ORTHO05D005066 9.9e-23 110.9 117 54.7
Eucgr.H03862 Eucalyptus grandis HOM05D001137 ORTHO05D005066 1.7e-22 110.2 116 53.4
TWI09G0222 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 2.2e-22 109.8 116 50.0
SGA_v2.0_scaffold86G26927 Striga asiatica HOM05D001137 ORTHO05D005066 3.8e-22 109.0 113 49.6
FvH4_4g17510 Fragaria vesca HOM05D001137 ORTHO05D005066 4.9e-22 108.6 115 53.0
FAN12G2086 Fragaria x ananassa HOM05D001137 ORTHO05D005066 4.9e-22 108.6 115 53.0
TWI73G0988 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 1.1e-21 107.5 116 50.0
COL.COLO4_13912 Corchorus olitorius HOM05D001137 ORTHO05D005066 1.4e-21 107.1 105 50.5
Dinv38313 Davidia involucrata HOM05D001137 ORTHO05D005066 2.4e-21 106.3 114 51.8
RcHm_v2.0_Chr4g0421431 Rosa chinensis HOM05D001137 ORTHO05D005066 3.2e-21 105.9 114 50.0
FAN17G0634 Fragaria x ananassa HOM05D001137 ORTHO05D005066 4.2e-21 105.5 114 52.6
Psat1g187920 Pisum sativum HOM05D001137 ORTHO05D005066 4.2e-21 105.5 119 49.6
Ca_00560_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 7.1e-21 104.8 114 51.8
PGR004G0465 Punica granatum HOM05D001137 ORTHO05D005066 7.1e-21 104.8 116 50.9
AUR62027452 Chenopodium quinoa HOM05D001137 ORTHO05D005066 9.3e-21 104.4 114 49.1
TPR.G1509 Trifolium pratense HOM05D001137 ORTHO05D005066 9.3e-21 104.4 116 51.7
Lsat_1_v5_gn_5_157341 Lactuca sativa HOM05D001137 ORTHO05D005066 1.6e-20 103.6 117 46.2
Actinidia01942 Actinidia chinensis HOM05D001137 ORTHO05D005066 2.1e-20 103.2 114 47.4
Medtr2g019860 Medicago truncatula HOM05D001137 ORTHO05D005066 3.5e-20 102.4 115 50.4
MSTRG.3938 Avicennia marina HOM05D001137 ORTHO05D005066 4.6e-20 102.1 114 46.5
FAN07G1649 Fragaria x ananassa HOM05D001137 ORTHO05D005066 4.6e-20 102.1 121 50.4
Lalb_Chr18g0055631 Lupinus albus HOM05D001137 ORTHO05D005066 6.0e-20 101.7 120 50.8
Sed0010501 Sechium edule HOM05D001137 ORTHO05D005066 6.0e-20 101.7 109 48.6
Hma1.2p1_0698F.1_g205450 Hydrangea macrophylla HOM05D001137 ORTHO05D005066 1.3e-19 100.5 117 50.4
Glyma.15G096200 Glycine max HOM05D001137 ORTHO05D005066 1.7e-19 100.1 110 49.1
Lj4g0021111 Lotus japonicus HOM05D001137 ORTHO05D005066 1.7e-19 100.1 108 52.8
arahy.Tifrunner.gnm1.ann1.GKEN9S Arachis hypogaea HOM05D001137 ORTHO05D005066 2.3e-19 99.8 113 49.6
Lj6g0014210 Lotus japonicus HOM05D001137 ORTHO05D005066 2.3e-19 99.8 111 50.5
Rhsim04G0218100 Rhododendron simsii HOM05D001137 ORTHO05D005066 2.3e-19 99.8 121 45.5
Sc13g0003550 Simmondsia chinensis HOM05D001137 ORTHO05D005066 3.0e-19 99.4 113 46.9
vmacro22477 Vaccinium macrocarpon HOM05D001137 ORTHO05D005066 3.0e-19 99.4 116 44.0
Gohir.A09G240400 Gossypium hirsutum HOM05D001137 ORTHO05D005066 3.9e-19 99.0 117 48.7
arahy.Tifrunner.gnm1.ann1.S97PWN Arachis hypogaea HOM05D001137 ORTHO05D005066 5.1e-19 98.6 111 48.6
Gohir.A10G161500 Gossypium hirsutum HOM05D001137 ORTHO05D005066 5.1e-19 98.6 116 47.4
QL06p007709 Quercus lobata HOM05D001137 ORTHO05D005066 6.6e-19 98.2 116 45.7
ECA248G1543 Erigeron canadensis HOM05D001137 ORTHO05D005066 8.7e-19 97.8 110 48.2
Gorai.006G264600 Gossypium raimondii HOM05D001137 ORTHO05D005066 8.7e-19 97.8 117 47.9
HanXRQChr01g0008171 Helianthus annuus HOM05D001137 ORTHO05D005066 8.7e-19 97.8 112 46.4
CSS0008512 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 1.1e-18 97.4 114 46.5
CSS0028405 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 1.1e-18 97.4 114 46.5
Cc03_g02170 Coffea canephora HOM05D001137 ORTHO05D005066 1.5e-18 97.1 114 46.5
Gohir.D10G168000 Gossypium hirsutum HOM05D001137 ORTHO05D005066 1.5e-18 97.1 116 47.4
Gorai.011G187500 Gossypium raimondii HOM05D001137 ORTHO05D005066 1.5e-18 97.1 116 47.4
Oeu021619.1 Olea europaea HOM05D001137 ORTHO05D005066 1.9e-18 96.7 103 48.5
VMungo0375G0001 Vigna mungo HOM05D001137 ORTHO05D005066 3.3e-18 95.9 111 45.9
CANSAT78G1005 Cannabis sativa HOM05D001137 ORTHO05D005066 4.3e-18 95.5 116 46.6
CARHR194430 Cardamine hirsuta HOM05D001137 ORTHO05D005066 5.6e-18 95.1 116 44.8
Nn3g21353 Nelumbo nucifera HOM05D001137 ORTHO05D005066 9.6e-18 94.4 114 49.1
Aqoxy2G03075 Aquilegia oxysepala HOM05D001137 ORTHO05D005066 1.3e-17 94.0 114 45.6
Glyma.13G216400 Glycine max HOM05D001137 ORTHO05D005066 1.3e-17 94.0 111 48.6
TAR355G0001 Trochodendron aralioides HOM05D000116 ORTHO05D000133 1.6e-17 93.6 117 44.4
DCAR_030541 Daucus carota HOM05D001137 ORTHO05D005066 2.1e-17 93.2 116 47.4
Migut.G00190 Erythranthe guttata HOM05D001137 ORTHO05D005066 2.1e-17 93.2 112 44.6
SalBow2G1809 Salvia bowleyana HOM05D001137 ORTHO05D005066 2.1e-17 93.2 104 46.2
CsaV3_3G014290 Cucumis sativus L. HOM05D001137 ORTHO05D005066 2.8e-17 92.8 116 47.4
Nn1g08126 Nelumbo nucifera HOM05D001137 ORTHO05D005066 2.8e-17 92.8 114 46.5
Nn4g25962 Nelumbo nucifera HOM05D001137 ORTHO05D005066 2.8e-17 92.8 114 46.5
Phvul.006G162800 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 2.8e-17 92.8 101 46.5
Sp6g25740 Schrenkiella parvula HOM05D001137 ORTHO05D005066 4.8e-17 92.0 116 45.7
Aa31LG11G11030 Aethionema arabicum HOM05D001137 ORTHO05D005066 6.2e-17 91.7 113 45.1
GSVIVG01017784001 Vitis vinifera HOM05D001137 ORTHO05D005066 6.2e-17 91.7 105 47.6
TAR362G1170 Trochodendron aralioides HOM05D001137 ORTHO05D005066 8.1e-17 91.3 117 43.6
AT5G18590 Arabidopsis thaliana HOM05D001137 ORTHO05D005066 1.1e-16 90.9 116 45.7
MELO3C006622.2 Cucumis melo HOM05D001137 ORTHO05D005066 1.4e-16 90.5 116 46.6
THA.LOC104802721 Tarenaya hassleriana HOM05D001137 ORTHO05D005066 1.4e-16 90.5 114 45.6
CDE11G0818 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 2.4e-16 89.7 114 43.0
Thhalv10012828m.g Eutrema salsugineum HOM05D001137 ORTHO05D005066 2.4e-16 89.7 112 44.6
Glyma.17G024000 Glycine max HOM05D001137 ORTHO05D005066 2.4e-16 89.7 112 45.5
arahy.Tifrunner.gnm1.ann1.SGL9NF Arachis hypogaea HOM05D001137 ORTHO05D005066 5.3e-16 88.6 112 46.4
A10p20970 Brassica napus HOM05D001137 ORTHO05D005066 5.3e-16 88.6 111 45.0
BraA10t44162Z Brassica rapa HOM05D001137 ORTHO05D005066 5.3e-16 88.6 111 45.0
Phvul.003G102100 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 6.9e-16 88.2 111 45.9
Carub.0006s1687 Capsella rubella HOM05D001137 ORTHO05D005066 9.0e-16 87.8 116 43.1
AUR62031245 Chenopodium quinoa HOM05D001137 ORTHO05D005066 9.0e-16 87.8 77 55.8
VMungo1215G0971 Vigna mungo HOM05D001137 ORTHO05D005066 9.0e-16 87.8 111 45.9
EL10Ac7g16750 Beta vulgaris HOM05D001137 ORTHO05D005066 1.5e-15 87.0 107 43.9
ClCG00G003670 Citrullus lanatus HOM05D001137 ORTHO05D005066 1.5e-15 87.0 106 48.1
ClCG05G005910 Citrullus lanatus HOM05D001137 ORTHO05D005066 1.5e-15 87.0 106 48.1
BcaB08g36660 Brassica carinata HOM05D001137 ORTHO05D005066 2.0e-15 86.7 110 45.5
BcaC04g18664 Brassica carinata HOM05D001137 ORTHO05D005066 2.0e-15 86.7 111 44.1
C09p57890 Brassica napus HOM05D001137 ORTHO05D005066 2.0e-15 86.7 111 44.1
BolC9t58657H Brassica oleracea HOM05D001137 ORTHO05D005066 2.0e-15 86.7 111 44.1
Sed0020296 Sechium edule HOM05D001137 ORTHO05D005066 2.6e-15 86.3 111 45.0
Peaxi162Scf00386g00616 Petunia axillaris HOM05D001137 ORTHO05D005066 3.4e-15 85.9 111 41.4
MBI18_g01977_MAGBIO Magnolia biondii HOM05D001137 ORTHO05D005066 7.6e-15 84.7 114 41.2
Ah.08g211130 Amaranthus hybridus HOM05D001137 ORTHO05D005066 1.7e-14 83.6 110 41.8
Nitab4.5_0000829g0190 Nicotiana tabacum HOM05D001137 ORTHO05D005066 2.2e-14 83.2 108 41.7
CAN.G580.11 Capsicum annuum HOM05D001137 ORTHO05D005066 2.9e-14 82.8 109 40.4
PSO210G1694 Papaver somniferum HOM05D001137 ORTHO05D005066 2.9e-14 82.8 115 41.7
Psat4g027640 Pisum sativum HOM05D001137 ORTHO05D005066 3.8e-14 82.4 122 42.6
Solyc01g067480.4 Solanum lycopersicum HOM05D001137 ORTHO05D005066 6.4e-14 81.6 109 39.4
PGSC0003DMG402022673 Solanum tuberosum HOM05D001137 ORTHO05D005066 6.4e-14 81.6 109 39.4
Lj3C813G4 Lonicera japonica HOM05D001137 ORTHO05D005066 8.4e-14 81.3 88 45.5
Ca_21531_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.9e-13 80.1 65 60.0
Glyma.07G250400 Glycine max HOM05D001137 ORTHO05D005066 1.9e-13 80.1 111 42.3
Sopen01g029390 Solanum pennellii HOM05D001137 ORTHO05D005066 1.9e-13 80.1 109 38.5
Ca_21530_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 4.2e-13 79.0 65 60.0
Ca_21539_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 4.2e-13 79.0 65 60.0
PSO170G4147 Papaver somniferum HOM05D001137 ORTHO05D005066 5.4e-13 78.6 115 40.0
arahy.Tifrunner.gnm1.ann1.HMK9CN Arachis hypogaea HOM05D001137 ORTHO05D005066 7.1e-13 78.2 65 56.9
HanXRQChr13g0388221 Helianthus annuus HOM05D001137 ORTHO05D005066 7.1e-13 78.2 113 40.7
TPR.G14624 Trifolium pratense HOM05D001137 ORTHO05D005066 1.2e-12 77.4 70 54.3
HPP92_015154 Vanilla planifolia HOM05D001137 ORTHO05D005066 1.2e-12 77.4 106 41.5
Glyma.03G112050 Glycine max HOM05D001137 ORTHO05D005066 4.6e-12 75.5 71 53.5
Glyma.17G181950 Glycine max HOM05D001137 ORTHO05D005066 1.0e-11 74.3 82 46.3
Medtr4g119100 Medicago truncatula HOM05D001137 ORTHO05D005066 1.0e-11 74.3 65 55.4
Oeu021045.1 Olea europaea HOM05D001137 ORTHO05D005066 3.9e-11 72.4 89 42.7
Zm00001eb410440 Zea mays HOM05D001137 ORTHO05D005066 8.7e-11 71.2 68 48.5
Os11g0657000 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D005066 3.3e-10 69.3 68 45.6
Zm00001eb165710 Zea mays HOM05D001137 ORTHO05D005066 5.6e-10 68.6 107 35.5
TAR365G1163 Trochodendron aralioides HOM05D001137 ORTHO05D005066 2.8e-09 66.2 114 40.4
Oeu029261.1 Olea europaea HOM05D001137 ORTHO05D005066 4.8e-09 65.5 62 51.6
Os12g0538800 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D005066 9.0e-08 61.2 68 41.2
AL6G29860 Arabidopsis lyrata HOM05D001137 ORTHO05D005066 1.2e-07 60.8 52 55.8
ATR0706G140 Amborella trichopoda HOM05D001137 ORTHO05D005066 2.0e-07 60.1 62 46.8
CDE05G0074 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 1.3e-06 57.4 40 67.5
AagrBONN_evm.TU.Sc2ySwM_117.4107 Anthoceros agrestis HOM05D001137 ORTHO05D001967 3.8e-06 55.8 60 46.7
SEGI_23102 Sequoiadendron giganteum HOM05D001137 ORTHO05D005066 8.4e-06 54.7 73 35.6
SEGI_27380 Sequoiadendron giganteum HOM05D001137 ORTHO05D005066 8.4e-06 54.7 73 35.6


User provided reference genes

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