Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00269 Sapria himalayana HOM05D006926 ORTHO05D008863 4.3e-138 496.5 254 100.0
Duzib151G0724 Durio zibethinus HOM05D006926 ORTHO05D008863 2.7e-63 248.1 221 58.8
BraA03t12676Z Brassica rapa HOM05D006926 ORTHO05D008863 2.3e-59 235.0 201 57.2
Manes.03G195800 Manihot esculenta HOM05D006926 ORTHO05D008863 2.3e-59 235.0 183 62.8
A03p34960 Brassica napus HOM05D006926 ORTHO05D008863 3.0e-59 234.6 201 56.7
Sabra10G0009000 Salix brachista HOM05D006926 ORTHO05D008863 4.0e-59 234.2 187 63.6
Potri.010G014100 Populus trichocarpa HOM05D006926 ORTHO05D008863 8.9e-59 233.0 187 63.1
C03p42540 Brassica napus HOM05D006926 ORTHO05D008863 1.5e-58 232.3 202 56.4
ClCG05G006130 Citrullus lanatus HOM05D006926 ORTHO05D008863 3.4e-58 231.1 197 56.3
COL.COLO4_13863 Corchorus olitorius HOM05D006926 ORTHO05D008863 4.9e-57 227.3 215 55.8
Rhsim04G0222900 Rhododendron simsii HOM05D006926 ORTHO05D008863 1.8e-56 225.3 177 63.8
SalBow1G7679 Salvia bowleyana HOM05D006926 ORTHO05D008863 7.8e-55 219.9 195 55.9
Cfa015391 Carpinus fangiana HOM05D006926 ORTHO05D008863 1.0e-54 219.5 172 62.8
Haze_01195 Corylus avellana HOM05D006926 ORTHO05D008863 1.0e-54 219.5 225 51.1
Oeu029705.1 Olea europaea HOM05D006926 ORTHO05D008863 1.0e-54 219.5 203 53.2
FvH4_4g18230 Fragaria vesca HOM05D006926 ORTHO05D008863 1.3e-54 219.2 187 58.8
FAN12G2558 Fragaria x ananassa HOM05D006926 ORTHO05D008863 1.3e-54 219.2 187 58.8
FAN12G4333 Fragaria x ananassa HOM05D006926 ORTHO05D008863 1.3e-54 219.2 187 58.8
vmacro08158 Vaccinium macrocarpon HOM05D006926 ORTHO05D008863 1.7e-54 218.8 215 54.9
Migut.G00155 Erythranthe guttata HOM05D006926 ORTHO05D008863 2.9e-54 218.0 204 54.9
Cpa.g.sc16.177 Carica papaya HOM05D006926 ORTHO05D008863 6.6e-54 216.9 192 56.8
Atru.chr4.2848 Acer truncatum HOM05D006926 ORTHO05D008863 1.9e-53 215.3 188 58.5
FAN17G0573 Fragaria x ananassa HOM05D006926 ORTHO05D008863 3.3e-53 214.5 185 57.8
Gohir.D09G239500 Gossypium hirsutum HOM05D006926 ORTHO05D008863 4.3e-53 214.2 165 64.2
Gorai.006G262300 Gossypium raimondii HOM05D006926 ORTHO05D008863 4.3e-53 214.2 165 64.2
Lj9C380T3 Lonicera japonica HOM05D006926 ORTHO05D008863 1.6e-52 212.2 235 51.5
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 2.1e-52 211.8 205 54.1
TWI09G0560 Tripterygium wilfordii HOM05D006926 ORTHO05D008863 2.1e-52 211.8 176 58.5
Gohir.A09G238600 Gossypium hirsutum HOM05D006926 ORTHO05D008863 2.8e-52 211.5 165 63.0
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 2.8e-52 211.5 226 52.7
TAR365G0466 Trochodendron aralioides HOM05D006926 ORTHO05D008863 2.8e-52 211.5 170 64.1
Nitab4.5_0005852g0010 Nicotiana tabacum HOM05D006926 ORTHO05D008863 4.7e-52 210.7 181 60.2
Peaxi162Scf01123g00213 Petunia axillaris HOM05D006926 ORTHO05D008863 6.2e-52 210.3 207 55.6
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 8.0e-52 209.9 187 55.6
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 1.4e-51 209.1 221 49.3
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 2.3e-51 208.4 175 58.9
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 5.2e-51 207.2 171 60.8
Nitab4.5_0000059g0440 Nicotiana tabacum HOM05D006926 ORTHO05D008863 5.2e-51 207.2 181 59.7
CAN.G185.37 Capsicum annuum HOM05D006926 ORTHO05D008863 6.8e-51 206.8 181 58.0
HanXRQChr05g0150001 Helianthus annuus HOM05D006926 ORTHO05D008863 6.8e-51 206.8 177 57.1
MSTRG.10097 Avicennia marina HOM05D006926 ORTHO05D008863 8.9e-51 206.5 212 49.5
Prupe.1G135500 Prunus persica HOM05D006926 ORTHO05D008863 8.9e-51 206.5 181 56.9
PGSC0003DMG400006295 Solanum tuberosum HOM05D006926 ORTHO05D008863 8.9e-51 206.5 175 60.6
THA.LOC104818923 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 3.4e-50 204.5 183 56.3
Solyc01g080720.4 Solanum lycopersicum HOM05D006926 ORTHO05D008863 7.5e-50 203.4 175 59.4
TPR.G14143 Trifolium pratense HOM05D006926 ORTHO05D008863 1.7e-49 202.2 195 55.4
Psat2g008440 Pisum sativum HOM05D006926 ORTHO05D008863 2.9e-49 201.4 179 57.5
Hund12224 Selenicereus undatus HOM05D006926 ORTHO05D008863 1.1e-48 199.5 171 60.2
CSS0048032 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 5.4e-48 197.2 204 52.5
Medtr5g095130 Medicago truncatula HOM05D006926 ORTHO05D008863 1.2e-47 196.1 182 56.0
PGR031G3585 Punica granatum HOM05D006926 ORTHO05D008863 1.2e-47 196.1 182 52.7
Cc00_g07570 Coffea canephora HOM05D006926 ORTHO05D008863 1.6e-47 195.7 189 55.6
Sopen01g030780 Solanum pennellii HOM05D006926 ORTHO05D008863 4.6e-47 194.1 193 52.8
Nn6g34671 Nelumbo nucifera HOM05D006926 ORTHO05D008863 6.0e-47 193.7 211 48.8
Cc01_g06580 Coffea canephora HOM05D006926 ORTHO05D008863 2.3e-46 191.8 221 50.2
Sc10g0006430 Simmondsia chinensis HOM05D006926 ORTHO05D008863 2.3e-46 191.8 171 57.3
AUR62035127 Chenopodium quinoa HOM05D006926 ORTHO05D008863 3.9e-46 191.0 172 55.8
AL159U10010 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 6.6e-46 190.3 155 60.6
AUR62040613 Chenopodium quinoa HOM05D006926 ORTHO05D008863 6.6e-46 190.3 172 55.8
EL10Ac1g01925 Beta vulgaris HOM05D006926 ORTHO05D008863 1.1e-45 189.5 170 55.3
AL3G18040 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 1.9e-45 188.7 155 60.6
AL3G18070 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 1.9e-45 188.7 155 60.6
AL3G18090 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 1.9e-45 188.7 155 60.6
DCAR_006643 Daucus carota HOM05D006926 ORTHO05D008863 3.3e-45 188.0 192 53.6
TPR.G14145 Trifolium pratense HOM05D006926 ORTHO05D008863 3.3e-45 188.0 183 54.6
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 4.3e-45 187.6 179 55.9
AT3G06920 Arabidopsis thaliana HOM05D006926 ORTHO05D008863 5.6e-45 187.2 160 57.5
BolC3t16524H Brassica oleracea HOM05D006926 ORTHO05D008863 7.3e-45 186.8 199 49.7
RcHm_v2.0_Chr4g0422371 Rosa chinensis HOM05D006926 ORTHO05D008863 9.5e-45 186.4 175 54.3
CARHR081530 Cardamine hirsuta HOM05D006926 ORTHO05D008863 2.1e-44 185.3 160 57.5
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 3.6e-44 184.5 193 50.3
Thhalv10020026m.g Eutrema salsugineum HOM05D006926 ORTHO05D008863 4.7e-44 184.1 189 49.2
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.8e-43 182.2 161 57.8
Sp3g05870 Schrenkiella parvula HOM05D006926 ORTHO05D008863 3.1e-43 181.4 177 51.4
Aa31LG5G17490 Aethionema arabicum HOM05D006926 ORTHO05D008863 4.0e-43 181.0 160 56.9
THA.LOC104827343 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 1.2e-42 179.5 156 59.6
arahy.Tifrunner.gnm1.ann1.R7Y0VJ Arachis hypogaea HOM05D006926 ORTHO05D008863 9.8e-42 176.4 168 54.8
CsaV3_3G014680 Cucumis sativus L. HOM05D006926 ORTHO05D008863 9.8e-42 176.4 154 58.4
VMungo0647G0525 Vigna mungo HOM05D006926 ORTHO05D008863 9.8e-42 176.4 164 54.9
Nn2g14325 Nelumbo nucifera HOM05D006926 ORTHO05D008863 1.7e-41 175.6 183 49.2
Lalb_Chr17g0348851 Lupinus albus HOM05D006926 ORTHO05D008863 6.4e-41 173.7 165 52.7
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 6.4e-41 173.7 157 56.7
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 8.3e-41 173.3 162 54.3
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 5.4e-40 170.6 177 50.3
SGA_v2.0_scaffold67G22630 Striga asiatica HOM05D006926 ORTHO05D008863 1.6e-39 169.1 203 44.3
arahy.Tifrunner.gnm1.ann1.DI2NU4 Arachis hypogaea HOM05D006926 ORTHO05D008863 3.0e-38 164.9 163 53.4
PSO302G0177 Papaver somniferum HOM05D006926 ORTHO05D008863 4.4e-34 151.0 183 45.9
CDE01G0787 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 7.6e-34 150.2 169 47.3
LjContig00081g0009495 Lotus japonicus HOM05D006926 ORTHO05D008863 1.4e-32 146.0 131 55.0
Dinv26449 Davidia involucrata HOM05D006926 ORTHO05D008863 5.4e-32 144.1 101 72.3
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 1.2e-31 142.9 129 55.0
Ca_06384_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 5.1e-30 137.5 139 51.1
Ca_29965_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 5.1e-30 137.5 139 51.1
ATR0796G196 Amborella trichopoda HOM05D006926 ORTHO05D008863 7.3e-29 133.7 138 49.3
Eucgr.C02193 Eucalyptus grandis HOM05D006926 ORTHO05D008863 1.2e-28 132.9 150 48.7
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 1.1e-27 129.8 149 45.6
Lalb_Chr10g0107371 Lupinus albus HOM05D006926 ORTHO05D008863 1.1e-27 129.8 124 51.6
Phvul.008G277600 Phaseolus vulgaris HOM05D006926 ORTHO05D008863 2.4e-27 128.6 122 51.6
CDE11G0294 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 1.9e-24 119.0 144 43.1
Carub.0003s0644 Capsella rubella HOM05D006926 ORTHO05D008863 1.2e-23 116.3 101 58.4
HPP92_015997 Vanilla planifolia HOM05D006926 ORTHO05D008863 4.3e-21 107.8 125 41.6
Eucgr.B01739 Eucalyptus grandis HOM05D006926 ORTHO05D008863 4.9e-17 94.4 81 53.1
GSVIVG01017733001 Vitis vinifera HOM05D006926 ORTHO05D008863 9.6e-13 80.1 105 41.9
Ciclev10007037m.g Citrus clementina HOM05D006926 ORTHO05D008863 2.8e-12 78.6 43 83.7
Hma1.2p1_0951F.1_g240750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 4.0e-11 74.7 152 28.3
CiPaw.06G013000 Carya illinoinensis HOM05D000424 ORTHO05D000355 1.2e-10 73.2 152 33.6
SEGI_24878 Sequoiadendron giganteum HOM05D006926 ORTHO05D008863 1.2e-10 73.2 112 35.7
Dinv24509 Davidia involucrata HOM05D007830 ORTHO05D009947 5.8e-10 70.9 181 24.9
Os07g0249100 Oryza sativa ssp. japonica HOM05D006926 ORTHO05D008863 7.6e-10 70.5 144 31.9
TAR365G0845 Trochodendron aralioides HOM05D006926 ORTHO05D008863 9.9e-10 70.1 41 78.0
Cc07_g19510 Coffea canephora HOM05D000424 ORTHO05D000355 1.7e-09 69.3 156 30.1
Actinidia11685 Actinidia chinensis HOM05D007830 ORTHO05D009947 3.8e-09 68.2 160 26.2
vmacro00421 Vaccinium macrocarpon HOM05D000424 ORTHO05D000355 1.4e-08 66.2 153 28.8
TAR206G0004 Trochodendron aralioides HOM05D000424 ORTHO05D000355 2.4e-08 65.5 146 27.4
Oeu029182.1 Olea europaea HOM05D007830 ORTHO05D009947 5.5e-08 64.3 163 27.0
Zm00001eb304410 Zea mays HOM05D006926 ORTHO05D008863 7.1e-08 63.9 106 35.8
Sed0016159 Sechium edule HOM05D000424 ORTHO05D000355 1.2e-07 63.2 155 27.1
Nn3g21915 Nelumbo nucifera HOM05D007830 ORTHO05D009947 1.6e-07 62.8 160 23.1
Sabra10G0084800 Salix brachista HOM05D000424 ORTHO05D000355 2.1e-07 62.4 152 26.3
Lalb_Chr15g0086291 Lupinus albus HOM05D000424 ORTHO05D000355 2.7e-07 62.0 174 28.2
Pp3c2_27580 Physcomitrium patens HOM05D006926 ORTHO05D002107 2.7e-07 62.0 153 30.7
CDE02G2213 Ceratophyllum demersum HOM05D007173 ORTHO05D009151 3.5e-07 61.6 228 24.6
Mapoly0001s0055 Marchantia polymorpha HOM05D004079 ORTHO05D005437 4.6e-07 61.2 158 24.7
Lsat_1_v5_gn_8_31281 Lactuca sativa HOM05D006926 ORTHO05D008863 1.0e-06 60.1 41 65.9
TAR623G1671 Trochodendron aralioides HOM05D006819 ORTHO05D026583 1.0e-06 60.1 190 24.2
arahy.Tifrunner.gnm1.ann1.TA9010 Arachis hypogaea HOM05D000424 ORTHO05D000355 1.3e-06 59.7 145 29.7
PGR102G1884 Punica granatum HOM05D007173 ORTHO05D009151 1.3e-06 59.7 173 27.7
THA.LOC104802157 Tarenaya hassleriana HOM05D000424 ORTHO05D002854 1.3e-06 59.7 175 27.4
CANSAT01G3162 Cannabis sativa HOM05D000424 ORTHO05D000355 1.8e-06 59.3 154 26.6
SMO270G0123 Selaginella moellendorffii HOM05D000001 ORTHO05D376091 1.8e-06 59.3 188 23.9
arahy.Tifrunner.gnm1.ann1.P9G8D9 Arachis hypogaea HOM05D000424 ORTHO05D000355 3.0e-06 58.5 145 29.7
Lj6g0027999 Lotus japonicus HOM05D000424 ORTHO05D002854 3.9e-06 58.2 202 26.7
Sed0021384 Sechium edule HOM05D006926 ORTHO05D008863 3.9e-06 58.2 42 64.3
MSTRG.16426 Avicennia marina HOM05D007830 ORTHO05D009947 5.1e-06 57.8 175 22.9
Carub.0005s2919 Capsella rubella HOM05D000424 ORTHO05D002854 5.1e-06 57.8 160 26.9
DCAR_021784 Daucus carota HOM05D000424 ORTHO05D002854 6.7e-06 57.4 204 26.0
AL5G45290 Arabidopsis lyrata HOM05D000424 ORTHO05D002854 8.7e-06 57.0 159 27.0
AT3G62540 Arabidopsis thaliana HOM05D000424 ORTHO05D002854 8.7e-06 57.0 153 27.5
TAR629G2813 Trochodendron aralioides HOM05D000424 ORTHO05D000355 8.7e-06 57.0 176 27.3


User provided reference genes

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