Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 5.5e-101 370.9 182 100.0
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 3.1e-43 179.1 191 52.4
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.7e-41 172.2 195 51.3
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 2.4e-40 169.5 196 51.5
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 5.4e-40 168.3 192 52.6
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 7.1e-40 167.9 198 49.0
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 9.2e-40 167.5 203 51.2
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 9.2e-40 167.5 196 51.0
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.2e-39 167.2 198 51.0
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 2.1e-39 166.4 190 52.1
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 2.1e-39 166.4 175 54.9
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 6.0e-39 164.9 176 52.3
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 1.0e-38 164.1 201 50.2
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 2.3e-38 162.9 195 49.7
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 5.1e-38 161.8 189 50.8
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 5.1e-38 161.8 198 49.5
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 6.6e-38 161.4 191 51.3
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.9e-37 159.8 193 48.7
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 5.6e-37 158.3 185 51.4
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 7.3e-37 157.9 187 52.4
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 7.3e-37 157.9 173 49.7
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 9.5e-37 157.5 195 49.2
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 9.5e-37 157.5 193 48.2
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.6e-36 156.8 197 49.7
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 1.6e-36 156.8 175 53.1
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 6.2e-36 154.8 192 49.5
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 6.2e-36 154.8 192 49.5
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 1.4e-35 153.7 199 48.2
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 1.4e-35 153.7 183 49.2
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.4e-35 153.7 183 49.2
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.4e-35 153.7 183 49.2
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 8.9e-35 151.0 194 49.0
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 1.2e-34 150.6 196 45.9
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 1.2e-34 150.6 190 47.4
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 4.4e-34 148.7 122 63.9
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 9.9e-34 147.5 199 46.7
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.7e-33 146.7 188 48.4
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 3.8e-33 145.6 180 50.6
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 6.4e-33 144.8 180 48.9
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 6.4e-33 144.8 190 48.9
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.1e-32 144.1 180 50.0
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 1.4e-32 143.7 188 47.9
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.4e-32 142.9 189 45.0
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 5.4e-32 141.7 188 47.3
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 5.4e-32 141.7 189 45.5
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 5.4e-32 141.7 178 46.1
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 5.4e-32 141.7 196 45.9
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 9.2e-32 141.0 175 46.9
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.2e-31 140.6 183 46.4
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 2.1e-31 139.8 206 44.2
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 3.5e-31 139.0 192 46.4
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 6.0e-31 138.3 184 46.2
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.7e-30 136.7 174 46.6
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 2.3e-30 136.3 188 44.1
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.9e-30 135.6 196 47.4
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 5.1e-30 135.2 193 46.1
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 5.1e-30 135.2 168 50.6
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 1.5e-29 133.7 197 45.2
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.5e-29 133.7 184 42.4
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 3.3e-29 132.5 193 45.6
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.6e-28 130.2 184 42.9
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.6e-28 130.2 189 45.5
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 2.8e-28 129.4 193 46.1
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.6e-28 129.0 186 43.5
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 4.7e-28 128.6 188 44.1
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 1.1e-27 127.5 183 45.9
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.4e-27 127.1 201 43.8
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.8e-27 126.7 181 49.2
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.8e-27 126.7 194 46.4
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 3.1e-27 125.9 184 41.8
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.1e-27 125.9 186 43.0
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 5.2e-27 125.2 197 43.1
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 6.9e-27 124.8 182 46.2
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 6.9e-27 124.8 182 41.2
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 8.9e-27 124.4 179 50.3
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.2e-26 124.0 182 45.1
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.5e-26 123.6 184 43.5
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 2.0e-26 123.2 194 41.2
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 2.0e-26 123.2 179 44.7
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 2.6e-26 122.9 179 50.3
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 5.8e-26 121.7 181 49.7
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 5.8e-26 121.7 192 41.1
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 1.3e-25 120.6 178 50.0
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 1.3e-25 120.6 178 50.0
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 1.3e-25 120.6 178 50.0
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.7e-25 120.2 191 41.4
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 2.2e-25 119.8 178 43.3
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 2.2e-25 119.8 185 41.1
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 2.9e-25 119.4 205 43.4
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 3.8e-25 119.0 197 41.1
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 4.9e-25 118.6 180 41.7
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 4.9e-25 118.6 195 40.5
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 4.9e-25 118.6 199 41.7
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 6.4e-25 118.2 193 42.0
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.4e-25 118.2 174 42.5
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 8.4e-25 117.9 180 41.7
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.1e-24 117.5 190 41.1
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 3.2e-24 115.9 198 42.9
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 3.2e-24 115.9 198 42.9
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 3.2e-24 115.9 198 42.9
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 4.2e-24 115.5 176 42.6
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 4.2e-24 115.5 184 40.2
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 5.4e-24 115.2 194 36.6
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 7.1e-24 114.8 200 40.5
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 9.3e-24 114.4 172 41.9
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 2.1e-23 113.2 198 43.9
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 2.7e-23 112.8 190 40.5
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 6.0e-23 111.7 185 44.9
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 6.0e-23 111.7 185 41.6
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 6.0e-23 111.7 170 43.5
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 7.8e-23 111.3 188 43.6
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 7.8e-23 111.3 186 40.9
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.3e-22 110.5 177 41.8
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 2.3e-22 109.8 194 42.8
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 2.3e-22 109.8 194 42.8
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 3.0e-22 109.4 185 41.6
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 1.1e-21 107.5 201 41.8
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 1.9e-21 106.7 200 42.0
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 1.9e-21 106.7 200 42.0
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 1.9e-21 106.7 176 43.2
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 3.3e-21 105.9 199 38.7
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.1e-20 103.2 114 48.2
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 3.6e-20 102.4 179 36.3
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 3.6e-20 102.4 182 38.5
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 3.6e-20 102.4 192 37.5
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 1.8e-19 100.1 195 35.4
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 9.0e-19 97.8 171 39.2
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 1.5e-18 97.1 193 39.9
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.0e-18 96.7 192 35.4
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.0e-18 96.7 192 35.4
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 2.0e-18 96.7 185 36.2
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.4e-16 90.5 191 34.0
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 2.1e-15 86.7 88 61.4
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 5.1e-14 82.0 87 51.7
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 1.5e-13 80.5 63 63.5
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 2.0e-10 70.1 89 46.1
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 2.9e-09 66.2 146 34.9
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 3.8e-09 65.9 47 61.7
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 2.1e-07 60.1 190 26.8
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.3e-06 57.4 154 28.6


User provided reference genes

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