Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00183 Sapria himalayana HOM05D000947 ORTHO05D000079 9.4e-47 189.9 99 100.0
Dinv02069 Davidia involucrata HOM05D000947 ORTHO05D000079 1.7e-16 89.4 97 57.7
Actinidia13373 Actinidia chinensis HOM05D000947 ORTHO05D000079 5.0e-16 87.8 92 58.7
TWI53G1518 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 8.6e-16 87.0 92 57.6
Actinidia14268 Actinidia chinensis HOM05D000947 ORTHO05D000079 2.5e-15 85.5 92 57.6
MELO3C006696.2 Cucumis melo HOM05D000947 ORTHO05D000079 3.3e-15 85.1 92 56.5
Hma1.2p1_0078F.1_g040180 Hydrangea macrophylla HOM05D000947 ORTHO05D000079 3.3e-15 85.1 93 57.0
CsaV3_3G015000 Cucumis sativus L. HOM05D000947 ORTHO05D000079 9.5e-15 83.6 92 55.4
Thecc.04G294500 Theobroma cacao HOM05D000947 ORTHO05D000079 9.5e-15 83.6 92 58.7
ClCG05G006370 Citrullus lanatus HOM05D000947 ORTHO05D000079 4.7e-14 81.3 92 56.5
Sed0004649 Sechium edule HOM05D000947 ORTHO05D000079 4.7e-14 81.3 92 54.3
Rhsim02G0006100 Rhododendron simsii HOM05D000947 ORTHO05D000079 8.1e-14 80.5 92 57.6
Sabra08G0149800 Salix brachista HOM05D000947 ORTHO05D000079 8.1e-14 80.5 97 51.5
vmacro15201 Vaccinium macrocarpon HOM05D000947 ORTHO05D000079 6.8e-13 77.4 94 54.3
Duzib052G0902 Durio zibethinus HOM05D000947 ORTHO05D000079 8.9e-13 77.0 95 53.7
COL.COLO4_34678 Corchorus olitorius HOM05D000947 ORTHO05D000079 2.0e-12 75.9 98 54.1
Duzib212G0811 Durio zibethinus HOM05D000947 ORTHO05D000079 2.6e-12 75.5 95 50.5
TWI73G0953 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 2.6e-12 75.5 92 54.3
GSVIVG01035048001 Vitis vinifera HOM05D000947 ORTHO05D000079 2.6e-12 75.5 98 51.0
Sed0006924 Sechium edule HOM05D000947 ORTHO05D000079 3.4e-12 75.1 93 54.8
Haze_01093 Corylus avellana HOM05D000947 ORTHO05D000079 4.4e-12 74.7 94 54.3
TWI09G0287 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 4.4e-12 74.7 92 54.3
MD13G1159000 Malus domestica HOM05D000947 ORTHO05D000079 7.5e-12 73.9 92 52.2
QL06p011255 Quercus lobata HOM05D000947 ORTHO05D000079 9.9e-12 73.6 96 54.2
Cfa015476 Carpinus fangiana HOM05D000947 ORTHO05D000079 1.3e-11 73.2 92 53.3
MD16G1159200 Malus domestica HOM05D000947 ORTHO05D000079 1.3e-11 73.2 92 51.1
Dinv44322 Davidia involucrata HOM05D000947 ORTHO05D000079 1.7e-11 72.8 101 53.5
Gohir.D02G057800 Gossypium hirsutum HOM05D000947 ORTHO05D000079 1.7e-11 72.8 99 50.5
Prupe.1G126000 Prunus persica HOM05D000947 ORTHO05D000079 1.7e-11 72.8 92 51.1
Gorai.005G065300 Gossypium raimondii HOM05D000947 ORTHO05D000079 3.7e-11 71.6 99 50.5
Aa31LG11G7830 Aethionema arabicum HOM05D000947 ORTHO05D000079 4.9e-11 71.2 92 51.1
TAR636G3276 Trochodendron aralioides HOM05D000947 ORTHO05D000079 4.9e-11 71.2 92 48.9
vmacro08079 Vaccinium macrocarpon HOM05D000947 ORTHO05D000079 6.4e-11 70.9 97 48.5
CiPaw.01G142600 Carya illinoinensis HOM05D000947 ORTHO05D000079 8.3e-11 70.5 92 50.0
Duzib151G1181 Durio zibethinus HOM05D000947 ORTHO05D000079 1.1e-10 70.1 98 50.0
Manes.15G007100 Manihot esculenta HOM05D000947 ORTHO05D000079 1.1e-10 70.1 94 48.9
CSS0047505 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 1.4e-10 69.7 97 53.6
FvH4_4g19260 Fragaria vesca HOM05D000947 ORTHO05D000079 3.2e-10 68.6 98 49.0
FAN12G1806 Fragaria x ananassa HOM05D000947 ORTHO05D000079 3.2e-10 68.6 98 49.0
FAN12G3889 Fragaria x ananassa HOM05D000947 ORTHO05D000079 3.2e-10 68.6 98 49.0
Ciclev10006161m.g Citrus clementina HOM05D000947 ORTHO05D000079 5.4e-10 67.8 95 52.6
RcHm_v2.0_Chr4g0424251 Rosa chinensis HOM05D000947 ORTHO05D000079 7.1e-10 67.4 101 46.5
Thhalv10021708m.g Eutrema salsugineum HOM05D000947 ORTHO05D000079 9.2e-10 67.0 87 56.3
Manes.03G201300 Manihot esculenta HOM05D000947 ORTHO05D000079 9.2e-10 67.0 94 46.8
CANSAT78G2367 Cannabis sativa HOM05D000947 ORTHO05D000079 1.2e-09 66.6 100 49.0
Nn4g25675 Nelumbo nucifera HOM05D000947 ORTHO05D000079 1.2e-09 66.6 94 53.2
Rhsim04G0231900 Rhododendron simsii HOM05D000947 ORTHO05D000079 1.2e-09 66.6 96 50.0
Psat0s1646g0400 Pisum sativum HOM05D000947 ORTHO05D000079 1.6e-09 66.2 94 46.8
Potri.008G213900 Populus trichocarpa HOM05D000947 ORTHO05D000079 1.6e-09 66.2 97 47.4
SalBow2G2661 Salvia bowleyana HOM05D000947 ORTHO05D000079 1.6e-09 66.2 95 47.4
TPR.G16825 Trifolium pratense HOM05D000947 ORTHO05D000079 2.1e-09 65.9 92 51.1
TAR362G0689 Trochodendron aralioides HOM05D000947 ORTHO05D000079 2.1e-09 65.9 94 47.9
Actinidia15578 Actinidia chinensis HOM05D000947 ORTHO05D000079 3.5e-09 65.1 95 50.5
Actinidia40348 Actinidia chinensis HOM05D000947 ORTHO05D000079 3.5e-09 65.1 97 50.5
Potri.010G001300 Populus trichocarpa HOM05D000947 ORTHO05D000079 4.6e-09 64.7 100 46.0
TAR365G0972 Trochodendron aralioides HOM05D000947 ORTHO05D000079 4.6e-09 64.7 93 49.5
Sabra10G0001000 Salix brachista HOM05D000947 ORTHO05D000079 6.0e-09 64.3 101 45.5
Carub.0003s0628 Capsella rubella HOM05D000947 ORTHO05D000079 7.8e-09 63.9 87 52.9
Lj3A827T61 Lonicera japonica HOM05D000947 ORTHO05D000079 1.0e-08 63.5 105 47.6
Medtr7g112330 Medicago truncatula HOM05D000947 ORTHO05D000079 1.0e-08 63.5 94 46.8
Gohir.D01G023517 Gossypium hirsutum HOM05D000947 ORTHO05D000079 1.3e-08 63.2 92 48.9
Gorai.002G029400 Gossypium raimondii HOM05D000947 ORTHO05D000079 1.3e-08 63.2 92 48.9
Potri.002G199800 Populus trichocarpa HOM05D000947 ORTHO05D000079 1.3e-08 63.2 93 48.4
Gohir.A01G033700 Gossypium hirsutum HOM05D000947 ORTHO05D000079 1.7e-08 62.8 92 51.1
Ca_09303_v3 Cicer arietinum L. HOM05D000947 ORTHO05D000079 2.3e-08 62.4 93 45.2
Atru.chr4.2949 Acer truncatum HOM05D000947 ORTHO05D000079 3.0e-08 62.0 103 47.6
Lj4g0003510 Lotus japonicus HOM05D000947 ORTHO05D000079 3.0e-08 62.0 96 45.8
Potri.014G124400 Populus trichocarpa HOM05D000947 ORTHO05D000079 3.0e-08 62.0 93 50.5
Oeu017655.1 Olea europaea HOM05D000947 ORTHO05D000079 3.9e-08 61.6 92 47.8
Sabra02G0158600 Salix brachista HOM05D000947 ORTHO05D000079 3.9e-08 61.6 93 48.4
Lsat_1_v5_gn_6_19400 Lactuca sativa HOM05D000947 ORTHO05D000079 5.1e-08 61.2 107 44.9
Lalb_Chr13g0298321 Lupinus albus HOM05D000947 ORTHO05D000079 5.1e-08 61.2 93 46.2
Sp3g05710 Schrenkiella parvula HOM05D000947 ORTHO05D000079 5.1e-08 61.2 87 51.7
AL3G17850 Arabidopsis lyrata HOM05D000947 ORTHO05D000079 6.6e-08 60.8 87 52.9
Hma1.2p1_0013F.1_g008970 Hydrangea macrophylla HOM05D000947 ORTHO05D000079 6.6e-08 60.8 114 43.0
TPR.G1666 Trifolium pratense HOM05D000947 ORTHO05D000079 6.6e-08 60.8 102 44.1
AT3G06740 Arabidopsis thaliana HOM05D000947 ORTHO05D000079 8.6e-08 60.5 87 50.6
MSTRG.21663 Avicennia marina HOM05D000947 ORTHO05D000079 8.6e-08 60.5 92 46.7
FAN07G1787 Fragaria x ananassa HOM05D000947 ORTHO05D000079 8.6e-08 60.5 97 46.4
arahy.Tifrunner.gnm1.ann1.4Y7J59 Arachis hypogaea HOM05D000947 ORTHO05D000079 1.1e-07 60.1 96 44.8
QL12p028836 Quercus lobata HOM05D000947 ORTHO05D000079 1.1e-07 60.1 92 47.8
CDE02G0664 Ceratophyllum demersum HOM05D000947 ORTHO05D000079 1.5e-07 59.7 87 50.6
Migut.D00108 Erythranthe guttata HOM05D000947 ORTHO05D000079 1.5e-07 59.7 92 44.6
MSTRG.18121 Avicennia marina HOM05D000947 ORTHO05D000079 1.9e-07 59.3 87 49.4
BolC1t05589H Brassica oleracea HOM05D000947 ORTHO05D000079 1.9e-07 59.3 87 51.7
Eucgr.A00193 Eucalyptus grandis HOM05D000947 ORTHO05D000079 1.9e-07 59.3 92 46.7
HanXRQChr02g0049061 Helianthus annuus HOM05D000947 ORTHO05D000079 1.9e-07 59.3 101 46.5
Manes.01G224400 Manihot esculenta HOM05D000947 ORTHO05D000079 3.3e-07 58.5 92 47.8
Medtr4g121110 Medicago truncatula HOM05D000947 ORTHO05D000079 3.3e-07 58.5 97 45.4
PGR031G2113 Punica granatum HOM05D000947 ORTHO05D000079 4.3e-07 58.2 107 44.9
Sabra14G0092500 Salix brachista HOM05D000947 ORTHO05D000079 5.6e-07 57.8 92 47.8
SGA_v2.0_scaffold444G51713 Striga asiatica HOM05D000947 ORTHO05D000079 5.6e-07 57.8 100 44.0
CiPaw.02G077400 Carya illinoinensis HOM05D000947 ORTHO05D000079 7.3e-07 57.4 93 49.5
Nitab4.5_0000803g0070 Nicotiana tabacum HOM05D000947 ORTHO05D000079 7.3e-07 57.4 93 45.2
Sp2g19650 Schrenkiella parvula HOM05D000947 ORTHO05D000079 7.3e-07 57.4 96 47.9
CARHR182300 Cardamine hirsuta HOM05D000947 ORTHO05D000079 9.5e-07 57.0 92 47.8
Thecc.01G308700 Theobroma cacao HOM05D000947 ORTHO05D000079 9.5e-07 57.0 93 47.3
DCAR_027021 Daucus carota HOM05D000947 ORTHO05D000079 1.2e-06 56.6 95 45.3
Duzib138G1540 Durio zibethinus HOM05D000947 ORTHO05D000079 1.2e-06 56.6 95 45.3
Thhalv10005103m.g Eutrema salsugineum HOM05D000947 ORTHO05D000079 1.2e-06 56.6 92 45.7
Oeu006436.1 Olea europaea HOM05D000947 ORTHO05D000079 1.2e-06 56.6 108 45.4
BcaC09g47916 Brassica carinata HOM05D000947 ORTHO05D000079 1.6e-06 56.2 87 47.1
Lsat_1_v5_gn_6_115200 Lactuca sativa HOM05D000947 ORTHO05D000079 1.6e-06 56.2 115 43.5
Oeu016477.1 Olea europaea HOM05D000947 ORTHO05D000079 1.6e-06 56.2 107 44.9
Sed0027633 Sechium edule HOM05D000947 ORTHO05D000079 1.6e-06 56.2 93 47.3
BraA01t03796Z Brassica rapa HOM05D000947 ORTHO05D000079 2.1e-06 55.8 116 38.8
Lalb_Chr12g0200991 Lupinus albus HOM05D000947 ORTHO05D000079 2.1e-06 55.8 93 44.1
BcaB07g34146 Brassica carinata HOM05D000947 ORTHO05D000079 3.6e-06 55.1 96 42.7
CSS0044519 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 3.6e-06 55.1 92 41.3
Gohir.D11G116833 Gossypium hirsutum HOM05D000947 ORTHO05D000079 3.6e-06 55.1 93 47.3
Gorai.007G125000 Gossypium raimondii HOM05D000947 ORTHO05D000079 3.6e-06 55.1 93 47.3
MSTRG.20393 Avicennia marina HOM05D000947 ORTHO05D000079 4.7e-06 54.7 97 45.4
Dinv24417 Davidia involucrata HOM05D000947 ORTHO05D000079 4.7e-06 54.7 111 42.3
Nn3g21608 Nelumbo nucifera HOM05D000947 ORTHO05D000079 4.7e-06 54.7 87 47.1
Nitab4.5_0002715g0010 Nicotiana tabacum HOM05D000947 ORTHO05D000079 6.2e-06 54.3 112 40.2
Dinv10059 Davidia involucrata HOM05D000947 ORTHO05D000079 8.1e-06 53.9 92 47.8
Glyma.17G030900 Glycine max HOM05D000947 ORTHO05D000079 8.1e-06 53.9 92 44.6
Gohir.A11G111700 Gossypium hirsutum HOM05D000947 ORTHO05D000079 8.1e-06 53.9 93 46.2


User provided reference genes

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