Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 9.7e-83 310.1 154 100.0
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.1e-25 120.6 114 48.2
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.4e-25 119.4 114 49.1
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 4.2e-25 118.6 114 50.9
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 1.2e-24 117.1 115 50.4
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 2.1e-24 116.3 114 46.5
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 3.5e-24 115.5 114 47.4
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 4.6e-24 115.2 114 48.2
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 6.0e-24 114.8 100 52.0
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 6.0e-24 114.8 129 45.7
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 7.8e-24 114.4 114 44.7
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 7.8e-24 114.4 114 48.2
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.0e-23 114.0 98 53.1
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.3e-23 113.6 103 52.4
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 2.3e-23 112.8 114 50.0
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 2.3e-23 112.8 128 43.8
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 3.0e-23 112.5 114 46.5
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 3.0e-23 112.5 114 46.5
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.9e-23 112.1 100 53.0
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 6.6e-23 111.3 73 63.0
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 6.6e-23 111.3 98 55.1
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 1.1e-22 110.5 104 51.0
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.1e-22 110.5 100 53.0
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 1.9e-22 109.8 100 47.0
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 2.5e-22 109.4 100 52.0
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 2.5e-22 109.4 129 45.7
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 2.5e-22 109.4 114 43.0
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 3.3e-22 109.0 107 47.7
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 5.6e-22 108.2 114 45.6
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 9.6e-22 107.5 129 42.6
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 9.6e-22 107.5 100 48.0
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 1.3e-21 107.1 98 49.0
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.3e-21 107.1 103 48.5
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 1.3e-21 107.1 101 49.5
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.3e-21 107.1 101 49.5
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 1.6e-21 106.7 114 44.7
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 2.1e-21 106.3 111 43.2
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 2.8e-21 105.9 75 60.0
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 2.8e-21 105.9 75 61.3
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 3.6e-21 105.5 97 49.5
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 4.8e-21 105.1 115 44.3
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 4.8e-21 105.1 109 42.2
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 6.2e-21 104.8 140 41.4
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 8.1e-21 104.4 105 44.8
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 8.1e-21 104.4 101 46.5
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 1.1e-20 104.0 114 43.0
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.1e-20 104.0 97 49.5
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 1.8e-20 103.2 95 52.6
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.8e-20 103.2 97 48.5
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.8e-20 103.2 97 48.5
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 1.8e-20 103.2 114 43.0
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 1.8e-20 103.2 97 49.5
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.4e-20 102.8 95 52.6
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 2.4e-20 102.8 97 47.4
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.4e-20 102.8 97 47.4
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 2.4e-20 102.8 98 51.0
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 2.4e-20 102.8 100 43.0
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 2.4e-20 102.8 102 47.1
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 2.4e-20 102.8 104 47.1
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 2.4e-20 102.8 100 48.0
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 3.1e-20 102.4 114 39.5
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 3.1e-20 102.4 100 47.0
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 4.0e-20 102.1 103 46.6
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 6.9e-20 101.3 98 45.9
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 6.9e-20 101.3 114 40.4
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 6.9e-20 101.3 75 57.3
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 6.9e-20 101.3 97 48.5
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 9.0e-20 100.9 75 57.3
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 9.0e-20 100.9 97 48.5
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 9.0e-20 100.9 97 49.5
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 1.2e-19 100.5 97 48.5
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 1.5e-19 100.1 100 48.0
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 2.6e-19 99.4 100 42.0
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 2.6e-19 99.4 103 45.6
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 2.6e-19 99.4 71 57.7
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 3.4e-19 99.0 107 44.9
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 3.4e-19 99.0 101 46.5
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 3.4e-19 99.0 97 46.4
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 4.4e-19 98.6 100 45.0
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 5.8e-19 98.2 70 60.0
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 5.8e-19 98.2 70 60.0
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 5.8e-19 98.2 70 60.0
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 5.8e-19 98.2 70 60.0
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 5.8e-19 98.2 70 60.0
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 1.3e-18 97.1 70 60.0
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.3e-18 97.1 95 45.3
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 1.3e-18 97.1 71 56.3
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.3e-18 97.1 70 58.6
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.7e-18 96.7 104 39.4
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 2.2e-18 96.3 70 58.6
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.2e-18 96.3 92 52.2
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 2.2e-18 96.3 97 42.3
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 2.2e-18 96.3 68 61.8
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.2e-18 96.3 103 39.8
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 2.9e-18 95.9 104 39.4
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.9e-18 95.9 75 56.0
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 3.8e-18 95.5 100 41.0
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 3.8e-18 95.5 113 38.9
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 3.8e-18 95.5 109 37.6
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 3.8e-18 95.5 97 43.3
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 4.9e-18 95.1 104 39.4
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 4.9e-18 95.1 104 39.4
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 4.9e-18 95.1 104 39.4
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 4.9e-18 95.1 104 39.4
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 4.9e-18 95.1 101 48.5
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 6.4e-18 94.7 105 41.0
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 6.4e-18 94.7 70 58.6
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 6.4e-18 94.7 69 55.1
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 8.4e-18 94.4 70 57.1
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 8.4e-18 94.4 105 41.0
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 8.4e-18 94.4 113 41.6
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 1.4e-17 93.6 97 46.4
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 1.4e-17 93.6 97 46.4
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.9e-17 93.2 72 52.8
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.4e-17 92.8 70 52.9
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 3.2e-17 92.4 70 57.1
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 3.2e-17 92.4 70 54.3
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 4.2e-17 92.0 104 42.3
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 4.2e-17 92.0 114 38.6
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 4.2e-17 92.0 94 50.0
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 4.2e-17 92.0 75 52.0
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 4.2e-17 92.0 75 50.7
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 4.2e-17 92.0 97 42.3
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 4.2e-17 92.0 71 53.5
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 4.2e-17 92.0 103 44.7
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 4.2e-17 92.0 103 44.7
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 5.4e-17 91.7 105 44.8
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 9.3e-17 90.9 97 42.3
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 1.2e-16 90.5 69 52.2
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.2e-16 90.5 69 53.6
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 1.2e-16 90.5 71 50.7
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.6e-16 90.1 71 52.1
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.6e-16 90.1 71 52.1
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 2.1e-16 89.7 70 54.3
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.7e-16 89.4 71 50.7
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 2.7e-16 89.4 70 50.0
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 2.7e-16 89.4 75 46.7
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 4.6e-16 88.6 97 44.3
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 1.0e-15 87.4 71 50.7
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 1.0e-15 87.4 71 47.9
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.0e-15 87.4 72 48.6
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.3e-15 87.0 69 52.2
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.3e-15 87.0 69 53.6
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.7e-15 86.7 108 42.6
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 1.7e-15 86.7 71 49.3
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.7e-15 86.7 71 49.3
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.7e-15 86.7 71 49.3
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.7e-15 86.7 71 49.3
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 2.3e-15 86.3 97 40.2
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 3.9e-15 85.5 109 37.6
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 3.9e-15 85.5 75 45.3
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 3.9e-15 85.5 75 46.7
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 3.9e-15 85.5 72 47.2
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 5.1e-15 85.1 66 54.5
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.1e-15 85.1 71 47.9
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 8.7e-15 84.3 72 51.4
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.1e-14 84.0 69 50.7
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 1.1e-14 84.0 69 49.3
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 1.1e-14 84.0 97 42.3
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 1.5e-14 83.6 70 50.0
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.5e-14 83.6 70 51.4
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 3.3e-14 82.4 75 48.0
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 3.3e-14 82.4 75 42.7
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 5.6e-14 81.6 82 47.6
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.6e-13 80.1 67 43.3
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.4e-12 77.0 71 42.3
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 4.0e-12 75.5 103 36.9
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.2e-11 73.9 70 45.7
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.5e-11 73.6 82 41.5
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.6e-11 72.8 69 44.9
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 2.6e-11 72.8 70 47.1
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 3.4e-11 72.4 100 39.0
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 1.9e-09 66.6 63 47.6
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 6.0e-08 61.6 69 39.1
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 1.8e-07 60.1 69 40.6
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 1.8e-07 60.1 82 41.5
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 1.8e-07 60.1 82 41.5
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 3.9e-07 58.9 68 36.8
Peaxi162Scf00131g00137 Petunia axillaris HOM05D008739 ORTHO05D010871 3.3e-06 55.8 66 42.4
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 5.6e-06 55.1 41 53.7
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 5.6e-06 55.1 70 38.6
Migut.N00722 Erythranthe guttata HOM05D008739 ORTHO05D010871 9.6e-06 54.3 68 42.6
MBI15_g46028_MAGBIO Magnolia biondii HOM05D008739 ORTHO05D010871 9.6e-06 54.3 69 39.1


User provided reference genes

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