Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 0.0e+00 1361.3 681 100.0
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 5.2e-205 718.4 664 59.6
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 4.9e-203 711.8 671 58.3
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 1.4e-202 710.3 662 59.1
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 1.2e-196 690.6 664 56.0
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 2.9e-195 686.0 657 55.6
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 4.9e-195 685.3 676 55.9
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 1.1e-194 684.1 664 56.8
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 1.9e-194 683.3 668 57.5
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 2.4e-194 682.9 665 56.5
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 2.4e-194 682.9 664 56.5
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 2.4e-194 682.9 674 54.6
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 3.2e-194 682.6 666 56.2
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 7.1e-194 681.4 676 55.8
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 5.1e-192 675.2 665 55.3
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 5.1e-192 675.2 659 56.1
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 3.6e-190 669.1 630 57.3
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 1.8e-189 666.8 655 55.7
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 4.0e-189 665.6 664 55.4
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 2.4e-186 656.4 670 54.5
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 3.5e-185 652.5 669 53.8
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 6.7e-184 648.3 661 54.8
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 3.7e-182 642.5 678 52.5
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 2.4e-181 639.8 670 53.0
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 6.9e-181 638.3 653 53.8
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 1.2e-180 637.5 667 53.5
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.0e-180 636.7 668 52.8
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 2.0e-180 636.7 680 53.4
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 2.6e-180 636.3 676 52.4
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 3.4e-180 636.0 659 52.7
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 7.6e-180 634.8 667 53.4
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 7.6e-180 634.8 663 52.9
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 7.6e-180 634.8 653 53.8
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.0e-179 634.4 668 52.8
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 2.9e-179 632.9 662 54.4
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 3.8e-179 632.5 669 52.2
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 6.5e-179 631.7 654 54.1
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 2.5e-178 629.8 661 52.8
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 3.2e-178 629.4 661 53.6
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.5e-178 628.6 693 49.9
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 5.5e-178 628.6 726 50.1
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 7.1e-178 628.2 670 52.8
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 1.6e-177 627.1 654 52.3
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 1.6e-177 627.1 657 53.1
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 2.7e-177 626.3 653 53.9
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 6.0e-177 625.2 669 51.9
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 7.9e-177 624.8 669 53.8
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.0e-176 624.4 666 53.3
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 2.3e-176 623.2 657 53.1
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 3.0e-176 622.9 667 51.3
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 2.1e-174 616.7 670 50.9
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 6.3e-174 615.1 672 51.6
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 3.1e-173 612.8 674 50.9
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 4.1e-173 612.5 702 50.0
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 5.3e-173 612.1 683 51.0
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 1.2e-172 610.9 679 50.2
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 2.6e-172 609.8 669 52.0
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.9e-172 608.6 714 47.6
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 7.6e-172 608.2 652 51.4
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 7.6e-172 608.2 664 51.2
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 1.7e-171 607.1 677 51.4
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.7e-171 607.1 640 52.2
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.7e-171 607.1 670 51.8
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 1.1e-170 604.4 675 51.1
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 1.4e-170 604.0 641 52.6
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 1.4e-170 604.0 666 52.3
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 1.9e-170 603.6 667 49.8
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 2.5e-170 603.2 655 52.5
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 4.2e-170 602.4 669 51.7
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 4.2e-170 602.4 679 52.0
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 5.5e-170 602.1 662 51.2
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 5.5e-170 602.1 653 52.2
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 3.5e-169 599.4 670 51.8
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 6.1e-169 598.6 669 50.1
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 1.0e-168 597.8 668 52.2
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 8.7e-168 594.7 681 51.2
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 4.3e-167 592.4 681 51.1
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 2.8e-166 589.7 696 48.1
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 2.7e-161 573.2 658 50.3
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 2.0e-156 557.0 527 57.3
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 1.4e-154 550.8 654 48.8
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 3.6e-153 546.2 663 49.9
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 6.1e-153 545.4 665 47.4
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 1.1e-151 541.2 657 49.2
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 7.4e-151 538.5 440 64.8
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 1.3e-150 537.7 668 47.6
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 4.5e-148 529.3 510 56.7
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 8.5e-147 525.0 650 46.8
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.2e-145 521.2 516 56.2
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 5.2e-144 515.8 499 57.9
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 4.1e-141 506.1 651 47.2
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.7e-139 500.7 493 56.6
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 1.4e-133 481.1 667 43.2
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 4.7e-121 439.5 403 60.3
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 1.7e-110 404.4 653 40.6
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 4.9e-110 402.9 623 40.9
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 6.8e-96 355.9 649 36.1
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 1.8e-88 331.3 637 34.9
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 6.6e-83 312.8 400 47.8
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 2.8e-81 307.4 240 62.9
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 7.4e-66 256.1 459 36.6
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.6e-63 247.7 531 33.3
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 5.1e-51 206.8 474 34.2
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 6.3e-33 146.7 367 31.6
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.4e-32 145.6 179 41.9
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.1e-28 131.7 217 35.0
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.0e-27 129.4 98 65.3
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.6e-23 115.5 143 44.8
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 1.1e-21 109.4 87 65.5
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 3.6e-20 104.4 176 42.0
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.2e-19 100.5 206 33.0
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 3.1e-16 91.3 93 45.2
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 4.1e-16 90.9 92 53.3
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 4.5e-15 87.4 74 62.2
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 1.1e-13 82.8 108 42.6
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 2.1e-12 78.6 89 50.6
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 1.8e-11 75.5 86 50.0
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 4.9e-09 67.4 70 45.7


User provided reference genes

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