Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00126 Sapria himalayana HOM05D004819 ORTHO05D005654 3.7e-312 1073.9 540 100.0
Manes.03G205800 Manihot esculenta HOM05D004819 ORTHO05D005654 3.0e-211 738.8 507 71.6
Sabra10G0113000 Salix brachista HOM05D004819 ORTHO05D005654 1.9e-210 736.1 517 70.2
Potri.010G146800 Populus trichocarpa HOM05D004819 ORTHO05D005654 5.6e-210 734.6 522 69.2
Atru.chr4.3039 Acer truncatum HOM05D004819 ORTHO05D005654 3.6e-209 731.9 519 69.2
Ciclev10004336m.g Citrus clementina HOM05D004819 ORTHO05D005654 1.7e-206 723.0 523 69.2
Manes.15G000800 Manihot esculenta HOM05D004819 ORTHO05D005654 2.2e-206 722.6 508 69.3
GSVIVG01034978001 Vitis vinifera HOM05D004819 ORTHO05D005654 6.4e-206 721.1 516 67.8
Gohir.D10G179600 Gossypium hirsutum HOM05D004819 ORTHO05D005654 1.9e-205 719.5 501 70.3
RcHm_v2.0_Chr4g0425571 Rosa chinensis HOM05D004819 ORTHO05D005654 1.9e-205 719.5 507 69.2
Cfa015302 Carpinus fangiana HOM05D004819 ORTHO05D005654 4.2e-205 718.4 523 67.7
Nn2g14951 Nelumbo nucifera HOM05D004819 ORTHO05D005654 4.2e-205 718.4 515 68.3
Thecc.04G302500 Theobroma cacao HOM05D004819 ORTHO05D005654 4.2e-205 718.4 524 68.1
MD16G1152500 Malus domestica HOM05D004819 ORTHO05D005654 5.4e-205 718.0 513 69.0
Gorai.011G200900 Gossypium raimondii HOM05D004819 ORTHO05D005654 1.2e-204 716.8 502 70.3
Lj3C833T2 Lonicera japonica HOM05D004819 ORTHO05D005654 1.6e-204 716.5 528 66.1
FvH4_4g19930 Fragaria vesca HOM05D004819 ORTHO05D005654 2.1e-204 716.1 498 69.3
Phvul.003G115600 Phaseolus vulgaris HOM05D004819 ORTHO05D005654 2.1e-204 716.1 506 69.4
Prupe.1G115700 Prunus persica HOM05D004819 ORTHO05D005654 2.1e-204 716.1 514 68.3
arahy.Tifrunner.gnm1.ann1.ZA4S8T Arachis hypogaea HOM05D004819 ORTHO05D005654 2.7e-204 715.7 522 68.6
arahy.Tifrunner.gnm1.ann1.HD9JLY Arachis hypogaea HOM05D004819 ORTHO05D005654 3.5e-204 715.3 522 68.4
FAN07G2526 Fragaria x ananassa HOM05D004819 ORTHO05D005654 3.5e-204 715.3 523 67.1
FAN12G0990 Fragaria x ananassa HOM05D004819 ORTHO05D005654 4.6e-204 714.9 498 69.1
Gohir.A10G173100 Gossypium hirsutum HOM05D004819 ORTHO05D005654 6.0e-204 714.5 501 69.3
CsaV3_3G015230 Cucumis sativus L. HOM05D004819 ORTHO05D005654 3.0e-203 712.2 506 70.0
TAR365G0460 Trochodendron aralioides HOM05D004819 ORTHO05D005654 3.0e-203 712.2 516 68.0
Actinidia40384 Actinidia chinensis HOM05D004819 ORTHO05D005654 5.1e-203 711.4 529 66.4
ClCG05G006610 Citrullus lanatus HOM05D004819 ORTHO05D005654 6.6e-203 711.1 522 67.4
Ca_21436_v3 Cicer arietinum L. HOM05D004819 ORTHO05D005654 1.5e-202 709.9 515 67.8
Eucgr.H04055 Eucalyptus grandis HOM05D004819 ORTHO05D005654 2.5e-202 709.1 500 68.8
Dinv15153 Davidia involucrata HOM05D004819 ORTHO05D005654 9.6e-202 707.2 528 66.5
Duzib212G0926 Durio zibethinus HOM05D004819 ORTHO05D005654 1.6e-201 706.4 502 68.5
PGR004G0637 Punica granatum HOM05D004819 ORTHO05D005654 1.6e-201 706.4 504 66.9
Oeu046577.1 Olea europaea HOM05D004819 ORTHO05D005654 4.8e-201 704.9 526 66.3
Oeu052162.4 Olea europaea HOM05D004819 ORTHO05D005654 6.2e-201 704.5 527 67.0
CSS0034063 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 8.1e-201 704.1 501 67.7
Glyma.07G238900 Glycine max HOM05D004819 ORTHO05D005654 8.1e-201 704.1 516 67.4
Lj4g0007943 Lotus japonicus HOM05D004819 ORTHO05D005654 8.1e-201 704.1 504 68.7
Rhsim04G0240100 Rhododendron simsii HOM05D004819 ORTHO05D005654 8.1e-201 704.1 499 68.5
Sed0007022 Sechium edule HOM05D004819 ORTHO05D005654 1.4e-200 703.4 505 67.9
Sopen01g024570 Solanum pennellii HOM05D004819 ORTHO05D005654 1.8e-200 703.0 501 67.1
Solyc01g058730.4 Solanum lycopersicum HOM05D004819 ORTHO05D005654 2.4e-200 702.6 501 67.1
TPR.G25430 Trifolium pratense HOM05D004819 ORTHO05D005654 2.4e-200 702.6 496 69.0
Lalb_Chr07g0182051 Lupinus albus HOM05D004819 ORTHO05D005654 3.1e-200 702.2 506 67.4
Psat4g022840 Pisum sativum HOM05D004819 ORTHO05D005654 9.0e-200 700.7 522 66.1
VMungo1215G1911 Vigna mungo HOM05D004819 ORTHO05D005654 1.5e-199 699.9 501 68.3
PGSC0003DMG400001205 Solanum tuberosum HOM05D004819 ORTHO05D005654 2.0e-199 699.5 501 66.9
Sed0001798 Sechium edule HOM05D004819 ORTHO05D005654 2.6e-199 699.1 506 67.4
Hund03132 Selenicereus undatus HOM05D004819 ORTHO05D005654 9.9e-199 697.2 517 65.0
COL.COLO4_34600 Corchorus olitorius HOM05D004819 ORTHO05D005654 1.3e-198 696.8 501 67.7
QL06p012610 Quercus lobata HOM05D004819 ORTHO05D005654 6.4e-198 694.5 517 65.8
TWI09G1587 Tripterygium wilfordii HOM05D004819 ORTHO05D005654 6.4e-198 694.5 501 67.7
DCAR_030463 Daucus carota HOM05D004819 ORTHO05D005654 8.4e-198 694.1 506 66.0
Aqoxy2G02702 Aquilegia oxysepala HOM05D004819 ORTHO05D005654 1.4e-197 693.3 515 66.4
Cc03_g00710 Coffea canephora HOM05D004819 ORTHO05D005654 3.2e-197 692.2 505 66.5
THA.LOC104802608 Tarenaya hassleriana HOM05D004819 ORTHO05D005654 3.2e-197 692.2 526 64.1
Glyma.17G034800 Glycine max HOM05D004819 ORTHO05D005654 7.1e-197 691.0 531 65.0
Cpa.g.sc9.47 Carica papaya HOM05D004819 ORTHO05D005654 9.3e-197 690.6 512 67.8
Sc09g0007260 Simmondsia chinensis HOM05D004819 ORTHO05D005654 1.6e-196 689.9 508 66.3
Nitab4.5_0000931g0050 Nicotiana tabacum HOM05D004819 ORTHO05D005654 2.1e-196 689.5 504 66.1
AUR62016223 Chenopodium quinoa HOM05D004819 ORTHO05D005654 4.6e-196 688.3 519 64.5
Migut.G00071 Erythranthe guttata HOM05D004819 ORTHO05D005654 4.6e-196 688.3 500 66.2
AUR62039265 Chenopodium quinoa HOM05D004819 ORTHO05D005654 3.0e-195 685.6 519 64.0
EL10Ac3g05522 Beta vulgaris HOM05D004819 ORTHO05D005654 1.9e-194 682.9 517 63.6
MSTRG.10156 Avicennia marina HOM05D004819 ORTHO05D005654 7.4e-194 681.0 520 64.2
PSO761G0636 Papaver somniferum HOM05D004819 ORTHO05D005654 7.4e-194 681.0 507 65.1
SGA_v2.0_scaffold104G30069 Striga asiatica HOM05D004819 ORTHO05D005654 9.6e-194 680.6 509 66.2
PSO210G2958 Papaver somniferum HOM05D004819 ORTHO05D005654 1.6e-193 679.9 507 65.3
CANSAT78G1713 Cannabis sativa HOM05D004819 ORTHO05D005654 8.1e-193 677.6 498 67.5
ATR0693G033 Amborella trichopoda HOM05D004819 ORTHO05D005654 9.0e-192 674.1 500 64.0
ECA233G5711 Erigeron canadensis HOM05D004819 ORTHO05D005654 9.0e-192 674.1 527 63.8
SalBow8G2376 Salvia bowleyana HOM05D004819 ORTHO05D005654 1.2e-191 673.7 522 64.0
Peaxi162Scf00228g00333 Petunia axillaris HOM05D004819 ORTHO05D005654 2.6e-191 672.5 506 65.2
Lsat_1_v5_gn_6_1101 Lactuca sativa HOM05D004819 ORTHO05D005654 4.5e-191 671.8 497 66.8
Zm00001eb014900 Zea mays HOM05D004819 ORTHO05D005654 5.8e-191 671.4 518 63.5
CiPaw.01G137100 Carya illinoinensis HOM05D004819 ORTHO05D005654 4.9e-190 668.3 526 64.3
Sp7g14690 Schrenkiella parvula HOM05D004819 ORTHO05D005654 6.7e-187 657.9 501 64.1
AL7G38910 Arabidopsis lyrata HOM05D004819 ORTHO05D005654 9.6e-186 654.1 501 64.1
C07p47720 Brassica napus HOM05D004819 ORTHO05D005654 1.6e-185 653.3 518 62.4
Thhalv10024420m.g Eutrema salsugineum HOM05D004819 ORTHO05D005654 1.6e-185 653.3 501 63.7
A03p49650 Brassica napus HOM05D004819 ORTHO05D005654 2.8e-185 652.5 518 62.2
Ah.05g176730 Amaranthus hybridus HOM05D004819 ORTHO05D005654 4.8e-185 651.7 461 69.0
Lsat_1_v5_gn_1_41600 Lactuca sativa HOM05D004819 ORTHO05D005654 4.8e-185 651.7 499 65.5
BcaC06g33458 Brassica carinata HOM05D004819 ORTHO05D005654 6.2e-185 651.4 518 62.2
BcaC06g32994 Brassica carinata HOM05D004819 ORTHO05D005654 1.8e-184 649.8 501 63.3
AT4G16180 Arabidopsis thaliana HOM05D004819 ORTHO05D005654 1.5e-183 646.7 518 62.0
Carub.0007s2536 Capsella rubella HOM05D004819 ORTHO05D005654 3.4e-183 645.6 501 63.5
BolC7t45297H Brassica oleracea HOM05D004819 ORTHO05D005654 1.7e-182 643.3 528 61.0
C01p26720 Brassica napus HOM05D004819 ORTHO05D005654 2.2e-182 642.9 501 62.7
BcaNung00215 Brassica carinata HOM05D004819 ORTHO05D005654 6.5e-182 641.3 501 62.9
BraA03t14064Z Brassica rapa HOM05D004819 ORTHO05D005654 1.1e-181 640.6 538 59.9
Haze_01312 Corylus avellana HOM05D004819 ORTHO05D005654 1.4e-181 640.2 540 61.5
MELO3C006720.2 Cucumis melo HOM05D004819 ORTHO05D005654 2.5e-181 639.4 506 65.2
BcaC09g50317 Brassica carinata HOM05D004819 ORTHO05D005654 3.2e-181 639.0 501 62.5
A01p21370 Brassica napus HOM05D004819 ORTHO05D005654 3.2e-181 639.0 501 62.3
HanXRQChr02g0048601 Helianthus annuus HOM05D004819 ORTHO05D005654 4.2e-181 638.6 499 63.3
BolC1t02613H Brassica oleracea HOM05D004819 ORTHO05D005654 7.1e-181 637.9 503 62.2
BraA01t02042Z Brassica rapa HOM05D004819 ORTHO05D005654 7.1e-181 637.9 503 62.2
CARHR222550 Cardamine hirsuta HOM05D004819 ORTHO05D005654 7.1e-181 637.9 522 61.5
CDE02G0522 Ceratophyllum demersum HOM05D004819 ORTHO05D005654 1.5e-178 630.2 469 65.9
Aa31LG10G5910 Aethionema arabicum HOM05D004819 ORTHO05D005654 1.3e-177 627.1 544 58.6
HanXRQChr11g0353871 Helianthus annuus HOM05D004819 ORTHO05D005654 1.6e-177 626.7 500 61.8
TWI53G0610 Tripterygium wilfordii HOM05D004819 ORTHO05D005654 3.9e-163 578.9 462 63.4
Nn4g25546 Nelumbo nucifera HOM05D004819 ORTHO05D005654 8.2e-161 571.2 515 57.9
unitig_88.g27704 Utricularia gibba HOM05D002812 ORTHO05D005654 1.7e-153 547.0 511 54.2
Mapoly0066s0100 Marchantia polymorpha HOM05D004819 ORTHO05D005654 8.5e-150 534.6 527 51.8
vmacro08030 Vaccinium macrocarpon HOM05D004819 ORTHO05D005654 1.7e-142 510.4 420 62.4
Pp3c16_6520 Physcomitrium patens HOM05D004819 ORTHO05D005654 2.0e-138 496.9 521 48.4
AagrBONN_evm.TU.Sc2ySwM_362.583 Anthoceros agrestis HOM05D004819 ORTHO05D005654 3.1e-136 489.6 498 49.6
Pp3c5_14560 Physcomitrium patens HOM05D004819 ORTHO05D005654 3.1e-136 489.6 522 47.3
SMO298G0056 Selaginella moellendorffii HOM05D004819 ORTHO05D005654 5.4e-120 435.6 522 46.9
CBR_g61507 Chara braunii HOM05D004819 ORTHO05D005654 6.0e-95 352.4 447 41.8
GSVIVG01034925001 Vitis vinifera HOM05D004819 ORTHO05D005654 3.4e-82 310.1 214 67.8
GSVIVG01034917001 Vitis vinifera HOM05D004819 ORTHO05D005654 3.9e-78 296.6 203 69.0
HPP92_005423 Vanilla planifolia HOM05D004819 ORTHO05D005654 2.1e-68 264.2 264 51.9
MCO15G339 Micromonas commoda HOM05D004819 ORTHO05D005654 4.2e-64 250.0 514 32.1
Nitab4.5_0000177g0090 Nicotiana tabacum HOM05D004819 ORTHO05D005654 4.2e-64 250.0 233 54.9
Eucgr.H04185 Eucalyptus grandis HOM05D004819 ORTHO05D005654 5.7e-61 239.6 199 64.3
Actinidia18457 Actinidia chinensis HOM05D004819 ORTHO05D005654 1.0e-49 202.2 209 51.2
CSS0017759 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 5.5e-40 169.9 165 55.2
PRCOL_00001897 Prasinoderma coloniale HOM05D004819 ORTHO05D005654 4.7e-39 166.8 429 31.2
CSS0032110 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 8.8e-38 162.5 157 56.1
SEGI_02776 Sequoiadendron giganteum HOM05D004819 ORTHO05D005654 6.5e-33 146.4 136 54.4
Cre10.g463300 Chlamydomonas reinhardtii HOM05D004819 ORTHO05D005654 8.5e-33 146.0 474 27.4
EL10Ac4g08939 Beta vulgaris HOM05D004819 ORTHO05D005654 5.5e-32 143.3 92 71.7
vmacro08031 Vaccinium macrocarpon HOM05D004819 ORTHO05D005654 1.6e-31 141.7 223 35.9
ECA234G0649 Erigeron canadensis HOM05D004819 ORTHO05D005654 7.7e-26 122.9 112 52.7
Rhsim05G0134500 Rhododendron simsii HOM05D004819 ORTHO05D005654 1.3e-25 122.1 77 76.6
Nn2g14956 Nelumbo nucifera HOM05D004819 ORTHO05D005654 2.0e-18 98.2 79 64.6
Sabra15G0067600 Salix brachista HOM05D004819 ORTHO05D005654 2.7e-18 97.8 93 58.1
SEGI_30135 Sequoiadendron giganteum HOM05D004819 ORTHO05D005654 1.1e-16 92.4 81 53.1
HPP92_005424 Vanilla planifolia HOM05D004819 ORTHO05D005654 1.7e-12 78.6 101 42.6
Lsat_1_v5_gn_9_59160 Lactuca sativa HOM05D004819 ORTHO05D005654 7.8e-10 69.7 60 58.3
CBR_g8886 Chara braunii HOM05D007118 ORTHO05D008957 4.3e-08 63.9 339 24.5


User provided reference genes

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