Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00104 Sapria himalayana HOM05D002153 ORTHO05D002137 1.1e-268 929.5 522 100.0
Haze_01351 Corylus avellana HOM05D002153 ORTHO05D002137 7.4e-50 202.6 439 33.3
CiPaw.02G072500 Carya illinoinensis HOM05D002153 ORTHO05D002137 4.8e-49 199.9 390 36.9
Manes.03G207800 Manihot esculenta HOM05D002153 ORTHO05D002137 2.4e-48 197.6 474 34.0
Potri.010G148900 Populus trichocarpa HOM05D002153 ORTHO05D002137 3.8e-46 190.3 456 34.2
Sabra10G0114900 Salix brachista HOM05D002153 ORTHO05D002137 1.6e-44 184.9 456 34.4
PGR031G1058 Punica granatum HOM05D002153 ORTHO05D002137 2.3e-43 181.0 400 33.8
GSVIVG01034951001 Vitis vinifera HOM05D002153 ORTHO05D002137 3.9e-43 180.3 347 34.0
QL03p023659 Quercus lobata HOM05D002153 ORTHO05D002137 1.1e-42 178.7 453 31.6
Prupe.1G112900 Prunus persica HOM05D002153 ORTHO05D002137 1.5e-42 178.3 472 31.4
CiPaw.01G134500 Carya illinoinensis HOM05D002153 ORTHO05D002137 2.0e-42 177.9 405 33.8
Eucgr.B03981 Eucalyptus grandis HOM05D002153 ORTHO05D002137 2.0e-42 177.9 355 33.5
Glyma.15G137800 Glycine max HOM05D002153 ORTHO05D002137 2.6e-42 177.6 437 31.6
Dinv44255 Davidia involucrata HOM05D002153 ORTHO05D002137 3.3e-42 177.2 454 32.6
VMungo0540G0227 Vigna mungo HOM05D002153 ORTHO05D002137 2.8e-41 174.1 453 30.9
MBI18_g27381_MAGBIO Magnolia biondii HOM05D002153 ORTHO05D002137 3.7e-41 173.7 351 36.8
FAN07G0860 Fragaria x ananassa HOM05D002153 ORTHO05D002137 8.2e-41 172.6 447 31.3
MD13G1148800 Malus domestica HOM05D002153 ORTHO05D002137 8.2e-41 172.6 414 34.3
CSS0033074 Camellia sinensis var. sinensis HOM05D002153 ORTHO05D002137 2.4e-40 171.0 395 33.9
Cc03_g00520 Coffea canephora HOM05D002153 ORTHO05D002137 4.1e-40 170.2 404 33.4
Glyma.09G032800 Glycine max HOM05D002153 ORTHO05D002137 5.3e-40 169.9 446 30.7
ClCG06G004400 Citrullus lanatus HOM05D002153 ORTHO05D002137 7.0e-40 169.5 452 31.2
CANSAT78G1175 Cannabis sativa HOM05D002153 ORTHO05D002137 1.2e-39 168.7 446 32.1
MD16G1149100 Malus domestica HOM05D002153 ORTHO05D002137 1.2e-39 168.7 414 33.3
RcHm_v2.0_Chr4g0426071 Rosa chinensis HOM05D002153 ORTHO05D002137 1.5e-39 168.3 354 33.6
Atru.BG.95.p Acer truncatum HOM05D002153 ORTHO05D002137 2.0e-39 167.9 343 37.9
Lj3A834G66 Lonicera japonica HOM05D002153 ORTHO05D002137 2.0e-39 167.9 410 30.2
Rhsim04G0242200 Rhododendron simsii HOM05D002153 ORTHO05D002137 2.0e-39 167.9 476 30.3
Aqoxy5G02710 Aquilegia oxysepala HOM05D002153 ORTHO05D002137 1.0e-38 165.6 349 33.2
Hma1.2p1_1400F.1_g280980 Hydrangea macrophylla HOM05D002153 ORTHO05D002137 1.0e-38 165.6 358 35.8
TWI73G1003 Tripterygium wilfordii HOM05D002153 ORTHO05D002137 1.7e-38 164.9 354 35.0
MELO3C021254.2 Cucumis melo HOM05D002153 ORTHO05D002137 3.8e-38 163.7 372 32.0
Medtr2g033460 Medicago truncatula HOM05D002153 ORTHO05D002137 3.8e-38 163.7 433 29.3
TWI53G0831 Tripterygium wilfordii HOM05D002153 ORTHO05D002137 3.8e-38 163.7 357 34.5
Phvul.006G120300 Phaseolus vulgaris HOM05D002153 ORTHO05D002137 6.5e-38 162.9 452 29.0
TPR.G33910 Trifolium pratense HOM05D002153 ORTHO05D002137 1.1e-37 162.2 440 30.5
TAR362G0075 Trochodendron aralioides HOM05D002153 ORTHO05D002137 1.1e-37 162.2 320 35.0
PSO724G0612 Papaver somniferum HOM05D002153 ORTHO05D002137 1.5e-37 161.8 347 33.7
arahy.Tifrunner.gnm1.ann1.P1PAWM Arachis hypogaea HOM05D002153 ORTHO05D002137 2.5e-37 161.0 456 29.6
arahy.Tifrunner.gnm1.ann1.K3Q6F6 Arachis hypogaea HOM05D002153 ORTHO05D002137 3.2e-37 160.6 456 29.6
Ciclev10004408m.g Citrus clementina HOM05D002153 ORTHO05D002137 1.2e-36 158.7 446 32.1
Gorai.011G202700 Gossypium raimondii HOM05D002153 ORTHO05D002137 1.2e-36 158.7 454 32.2
vmacro07964 Vaccinium macrocarpon HOM05D002153 ORTHO05D002137 1.2e-36 158.7 476 29.8
THA.LOC104802710 Tarenaya hassleriana HOM05D002153 ORTHO05D002137 1.6e-36 158.3 315 33.7
Lj6g0011183 Lotus japonicus HOM05D002153 ORTHO05D002137 2.1e-36 157.9 454 28.6
CARHR288030 Cardamine hirsuta HOM05D002153 ORTHO05D002137 2.7e-36 157.5 333 32.4
EL10Ac3g05553 Beta vulgaris HOM05D002153 ORTHO05D002137 4.7e-36 156.8 339 32.4
Gohir.A10G174700 Gossypium hirsutum HOM05D002153 ORTHO05D002137 4.7e-36 156.8 447 31.3
Sc13g0007070 Simmondsia chinensis HOM05D002153 ORTHO05D002137 4.7e-36 156.8 340 33.2
TAR633G0564 Trochodendron aralioides HOM05D002153 ORTHO05D002137 6.1e-36 156.4 457 31.3
Dinv15136 Davidia involucrata HOM05D002153 ORTHO05D002137 8.0e-36 156.0 429 31.2
Lalb_Chr18g0058541 Lupinus albus HOM05D002153 ORTHO05D002137 8.0e-36 156.0 354 31.9
Thecc.04G306000 Theobroma cacao HOM05D002153 ORTHO05D002137 8.0e-36 156.0 437 31.6
PSO729G0267 Papaver somniferum HOM05D002153 ORTHO05D002137 2.3e-35 154.5 348 33.0
Hund03141 Selenicereus undatus HOM05D002153 ORTHO05D002137 2.3e-35 154.5 342 33.3
Ah.13g071530 Amaranthus hybridus HOM05D002153 ORTHO05D002137 3.0e-35 154.1 341 34.0
Psat1g162440 Pisum sativum HOM05D002153 ORTHO05D002137 3.9e-35 153.7 302 35.4
Gohir.D10G181200 Gossypium hirsutum HOM05D002153 ORTHO05D002137 6.7e-35 152.9 454 31.5
Lj6C694G9 Lonicera japonica HOM05D002153 ORTHO05D002137 8.8e-35 152.5 438 31.3
Sed0005370 Sechium edule HOM05D002153 ORTHO05D002137 1.5e-34 151.8 450 29.8
DCAR_030450 Daucus carota HOM05D002153 ORTHO05D002137 2.0e-34 151.4 341 32.8
Duzib212G0181 Durio zibethinus HOM05D002153 ORTHO05D002137 2.0e-34 151.4 399 30.6
Lalb_Chr20g0120661 Lupinus albus HOM05D002153 ORTHO05D002137 3.3e-34 150.6 454 29.7
Aa31LG11G8370 Aethionema arabicum HOM05D002153 ORTHO05D002137 4.4e-34 150.2 412 31.1
Thhalv10003750m.g Eutrema salsugineum HOM05D002153 ORTHO05D002137 4.4e-34 150.2 309 33.3
BcaC06g30719 Brassica carinata HOM05D002153 ORTHO05D002137 5.7e-34 149.8 320 32.8
Sp2g19900 Schrenkiella parvula HOM05D002153 ORTHO05D002137 5.7e-34 149.8 447 28.4
HanXRQChr09g0250461 Helianthus annuus HOM05D002153 ORTHO05D002137 7.4e-34 149.4 467 29.8
Nn3g21802 Nelumbo nucifera HOM05D002153 ORTHO05D002137 9.7e-34 149.1 350 32.6
unitig_32.g11846 Utricularia gibba HOM05D002153 ORTHO05D002137 1.3e-33 148.7 328 29.9
MSTRG.3844 Avicennia marina HOM05D002153 ORTHO05D002137 1.7e-33 148.3 308 33.8
Ca_00958_v3 Cicer arietinum L. HOM05D002153 ORTHO05D002137 2.2e-33 147.9 479 28.4
AL8G23400 Arabidopsis lyrata HOM05D002153 ORTHO05D002137 2.8e-33 147.5 407 31.2
Actinidia31568 Actinidia chinensis HOM05D002153 ORTHO05D002137 6.3e-33 146.4 347 32.3
Carub.0008s0945 Capsella rubella HOM05D002153 ORTHO05D002137 1.8e-32 144.8 401 30.2
AT5G49580 Arabidopsis thaliana HOM05D002153 ORTHO05D002137 3.1e-32 144.1 401 29.2
BcaNung05956 Brassica carinata HOM05D002153 ORTHO05D002137 4.1e-32 143.7 315 32.4
C07p40000 Brassica napus HOM05D002153 ORTHO05D002137 4.1e-32 143.7 315 32.4
Oeu045760.1 Olea europaea HOM05D002153 ORTHO05D002137 5.3e-32 143.3 353 29.2
Duzib151G1027 Durio zibethinus HOM05D002153 ORTHO05D002137 1.2e-31 142.1 432 29.6
BolC7t44533H Brassica oleracea HOM05D002153 ORTHO05D002137 2.6e-31 141.0 315 32.1
Migut.G00037 Erythranthe guttata HOM05D002153 ORTHO05D002137 3.5e-31 140.6 330 30.9
ECA246G4663 Erigeron canadensis HOM05D002153 ORTHO05D002137 1.0e-30 139.0 329 33.7
Lsat_1_v5_gn_6_116141 Lactuca sativa HOM05D002153 ORTHO05D002137 1.7e-30 138.3 337 33.2
SGA_v2.0_scaffold64G22095 Striga asiatica HOM05D002153 ORTHO05D002137 2.9e-30 137.5 305 32.8
BraA06t26738Z Brassica rapa HOM05D002153 ORTHO05D002137 6.5e-30 136.3 444 28.4
A06p38230 Brassica napus HOM05D002153 ORTHO05D002137 8.5e-30 136.0 444 28.2
MSTRG.10169 Avicennia marina HOM05D002153 ORTHO05D002137 1.1e-29 135.6 342 31.6
CDE02G2661 Ceratophyllum demersum HOM05D002153 ORTHO05D002137 4.2e-29 133.7 449 28.3
Peaxi162Scf00228g00736 Petunia axillaris HOM05D002153 ORTHO05D002137 1.6e-28 131.7 327 31.8
Oeu022729.1 Olea europaea HOM05D002153 ORTHO05D002137 4.7e-28 130.2 364 28.8
ATR0693G275 Amborella trichopoda HOM05D002153 ORTHO05D002137 1.8e-27 128.3 465 29.2
Sopen07g011920 Solanum pennellii HOM05D002153 ORTHO05D002137 1.8e-27 128.3 330 32.1
HPP92_013512 Vanilla planifolia HOM05D002153 ORTHO05D002137 6.8e-27 126.3 342 29.5
MBI19_g03280_MAGBIO Magnolia biondii HOM05D002153 ORTHO05D002137 1.5e-26 125.2 374 31.3
CAN.G244.17 Capsicum annuum HOM05D002153 ORTHO05D002137 5.7e-26 123.2 330 30.9
Solyc07g026810.3 Solanum lycopersicum HOM05D002153 ORTHO05D002137 3.7e-25 120.6 330 31.2
Nitab4.5_0002264g0010 Nicotiana tabacum HOM05D002153 ORTHO05D002137 8.3e-25 119.4 354 29.7
CSS0018880 Camellia sinensis var. sinensis HOM05D002153 ORTHO05D002137 2.4e-24 117.9 137 47.4
CsaV3_6G028420 Cucumis sativus L. HOM05D002153 ORTHO05D002137 1.6e-23 115.2 286 32.2
CsaV3_UNG230090 Cucumis sativus L. HOM05D002153 ORTHO05D002137 1.6e-23 115.2 286 32.2
FvH4_4g20670 Fragaria vesca HOM05D002153 ORTHO05D002137 2.7e-23 114.4 145 44.8
COL.COLO4_34568 Corchorus olitorius HOM05D002153 ORTHO05D002137 3.5e-23 114.0 418 27.8
Zm00001eb211330 Zea mays HOM05D002153 ORTHO05D002137 4.5e-23 113.6 477 27.3
Cfa015276 Carpinus fangiana HOM05D002153 ORTHO05D002137 1.5e-21 108.6 204 33.3
Hund11995 Selenicereus undatus HOM05D002153 ORTHO05D002137 2.5e-21 107.8 346 28.9
AUR62016245 Chenopodium quinoa HOM05D002153 ORTHO05D002137 3.2e-21 107.5 140 41.4
AUR62032775 Chenopodium quinoa HOM05D002153 ORTHO05D002137 4.2e-21 107.1 145 42.1
Cpa.g.sc9.6 Carica papaya HOM05D002153 ORTHO05D002137 7.2e-21 106.3 133 46.6
Nitab4.5_0003420g0020 Nicotiana tabacum HOM05D002153 ORTHO05D002137 7.2e-21 106.3 481 26.0
PGSC0003DMG400022089 Solanum tuberosum HOM05D002153 ORTHO05D002137 5.2e-19 100.1 148 41.9
SalBow8G1973 Salvia bowleyana HOM05D002153 ORTHO05D002137 1.2e-18 99.0 401 27.4
SEGI_27903 Sequoiadendron giganteum HOM05D002153 ORTHO05D002137 4.4e-18 97.1 470 25.3
SEGI_04700 Sequoiadendron giganteum HOM05D002153 ORTHO05D002137 5.4e-16 90.1 415 26.7
SEGI_20213 Sequoiadendron giganteum HOM05D002153 ORTHO05D002137 7.7e-15 86.3 247 25.1
Cpa.g.sc9.5 Carica papaya HOM05D002153 ORTHO05D002137 3.6e-12 77.4 234 27.4
Pp3c24_9110 Physcomitrium patens HOM05D002153 ORTHO05D002137 5.7e-10 70.1 464 24.6
BcaC03g17737 Brassica carinata HOM05D002153 ORTHO05D002137 1.7e-09 68.6 141 35.5
Ciclev10019555m.g Citrus clementina HOM05D002153 ORTHO05D002137 1.7e-09 68.6 311 26.0
Duzib213G0956 Durio zibethinus HOM05D002153 ORTHO05D002137 3.7e-09 67.4 306 24.8
Gorai.013G178800 Gossypium raimondii HOM05D002153 ORTHO05D002137 9.2e-08 62.8 354 22.0
Gohir.A13G153500 Gossypium hirsutum HOM05D002153 ORTHO05D002137 3.5e-07 60.8 306 22.5
Mapoly0071s0022 Marchantia polymorpha HOM05D002153 ORTHO05D002137 3.5e-07 60.8 330 24.8
Gohir.D13G158100 Gossypium hirsutum HOM05D002153 ORTHO05D002137 5.9e-07 60.1 334 21.6
A07p27350 Brassica napus HOM05D002153 ORTHO05D002137 7.8e-07 59.7 316 23.4
BraA07t30376Z Brassica rapa HOM05D002153 ORTHO05D002137 7.8e-07 59.7 315 23.5
CSS0022668 Camellia sinensis var. sinensis HOM05D002153 ORTHO05D002137 1.0e-06 59.3 308 24.0
THA.LOC104812347 Tarenaya hassleriana HOM05D002153 ORTHO05D002137 1.3e-06 58.9 314 22.6
Thecc.07G157700 Theobroma cacao HOM05D002153 ORTHO05D002137 1.3e-06 58.9 307 22.5
ATR0165G035 Amborella trichopoda HOM05D002153 ORTHO05D002137 1.7e-06 58.5 344 21.8
Dinv42523 Davidia involucrata HOM05D002153 ORTHO05D002137 3.9e-06 57.4 308 23.1
Manes.03G083300 Manihot esculenta HOM05D002153 ORTHO05D002137 5.0e-06 57.0 331 23.6
RcHm_v2.0_Chr5g0027051 Rosa chinensis HOM05D002153 ORTHO05D002137 5.0e-06 57.0 312 23.1
PSO724G0123 Papaver somniferum HOM05D002153 ORTHO05D002137 8.6e-06 56.2 81 33.3


User provided reference genes

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