Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G05028 Striga asiatica HOM05D000237 ORTHO05D016966 6.0e-61 237.3 116 100.0
SGA_v2.0_scaffold260G45850 Striga asiatica HOM05D011878 ORTHO05D016966 2.2e-26 122.5 62 95.2
SGA_v2.0_scaffold58G20369 Striga asiatica HOM05D000237 ORTHO05D001145 2.0e-24 115.9 127 53.5
SGA_v2.0_scaffold11G05883 Striga asiatica HOM05D000237 ORTHO05D016966 1.3e-23 113.2 84 72.6
MSTRG.16902 Avicennia marina HOM05D000237 ORTHO05D001145 2.0e-19 99.4 117 46.2
Migut.B00083 Erythranthe guttata HOM05D000237 ORTHO05D001145 2.0e-19 99.4 125 47.2
SalBow1G0021 Salvia bowleyana HOM05D000237 ORTHO05D001145 3.4e-19 98.6 125 45.6
MSTRG.27639 Avicennia marina HOM05D000237 ORTHO05D001145 1.1e-17 93.6 117 43.6
MSTRG.19993 Avicennia marina HOM05D000237 ORTHO05D001145 1.8e-17 92.8 125 45.6
HanXRQChr10g0300891 Helianthus annuus HOM05D000237 ORTHO05D001145 1.5e-14 83.2 85 51.8
Oeu026677.1 Olea europaea HOM05D000237 ORTHO05D001145 1.9e-14 82.8 125 39.2
Nitab4.5_0003914g0020 Nicotiana tabacum HOM05D000237 ORTHO05D001145 3.2e-14 82.0 115 39.1
Oeu005711.1 Olea europaea HOM05D000237 ORTHO05D001145 5.5e-14 81.3 125 38.4
Peaxi162Scf00362g00069 Petunia axillaris HOM05D000237 ORTHO05D001145 5.5e-14 81.3 115 39.1
Solyc01g111570.3 Solanum lycopersicum HOM05D000237 ORTHO05D001145 7.2e-14 80.9 115 40.0
ECA234G3036 Erigeron canadensis HOM05D000237 ORTHO05D001145 1.2e-13 80.1 117 41.9
Nitab4.5_0000283g0320 Nicotiana tabacum HOM05D000237 ORTHO05D001145 1.2e-13 80.1 115 39.1
Oeu006683.1 Olea europaea HOM05D000237 ORTHO05D001145 1.2e-13 80.1 117 35.9
Oeu006684.1 Olea europaea HOM05D000237 ORTHO05D001145 1.2e-13 80.1 117 35.9
PGSC0003DMG402006188 Solanum tuberosum HOM05D000237 ORTHO05D001145 1.2e-13 80.1 115 40.0
Cfa005238 Carpinus fangiana HOM05D000237 ORTHO05D001145 2.1e-13 79.3 117 36.8
Lsat_1_v5_gn_4_71680 Lactuca sativa HOM05D000237 ORTHO05D001145 2.1e-13 79.3 117 42.7
CSS0005743 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 2.7e-13 79.0 86 44.2
Ciclev10027936m.g Citrus clementina HOM05D000237 ORTHO05D001145 2.7e-13 79.0 83 47.0
Sopen01g053610 Solanum pennellii HOM05D000237 ORTHO05D001145 2.7e-13 79.0 115 39.1
TAR628G0790 Trochodendron aralioides HOM05D000237 ORTHO05D001145 2.7e-13 79.0 109 40.4
CAN.G588.76 Capsicum annuum HOM05D000237 ORTHO05D001145 3.6e-13 78.6 125 36.8
Haze_02144 Corylus avellana HOM05D000237 ORTHO05D001145 4.7e-13 78.2 85 47.1
CANSAT25G0515 Cannabis sativa HOM05D000237 ORTHO05D001145 1.0e-12 77.0 124 38.7
Lj9A393G50 Lonicera japonica HOM05D000237 ORTHO05D016966 1.4e-12 76.6 84 46.4
CiPaw.05G081900 Carya illinoinensis HOM05D000237 ORTHO05D001145 2.3e-12 75.9 125 36.8
DCAR_003168 Daucus carota HOM05D000237 ORTHO05D001145 2.3e-12 75.9 115 41.7
CSS0029298 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 4.0e-12 75.1 85 44.7
Gohir.A01G168400 Gossypium hirsutum HOM05D000237 ORTHO05D001145 4.0e-12 75.1 115 42.6
Cc09_g10140 Coffea canephora HOM05D000237 ORTHO05D001145 5.2e-12 74.7 115 37.4
Lj5A179G80 Lonicera japonica HOM05D000237 ORTHO05D001145 5.2e-12 74.7 126 35.7
EL10Ac9g21383 Beta vulgaris HOM05D000237 ORTHO05D001145 8.8e-12 73.9 125 38.4
TAR376G0531 Trochodendron aralioides HOM05D000237 ORTHO05D001145 8.8e-12 73.9 117 38.5
Atru.chr5.3315 Acer truncatum HOM05D000237 ORTHO05D001145 1.2e-11 73.6 85 42.4
Cpa.g.sc37.139 Carica papaya HOM05D000237 ORTHO05D001145 1.2e-11 73.6 85 45.9
Sabra09G0104500 Salix brachista HOM05D000237 ORTHO05D001145 1.2e-11 73.6 127 33.1
Gohir.D01G159400 Gossypium hirsutum HOM05D000237 ORTHO05D001145 2.0e-11 72.8 115 41.7
Gorai.002G197700 Gossypium raimondii HOM05D000237 ORTHO05D001145 2.0e-11 72.8 115 41.7
Thecc.02G060500 Theobroma cacao HOM05D000237 ORTHO05D001145 2.0e-11 72.8 125 35.2
Manes.04G075980 Manihot esculenta HOM05D000237 ORTHO05D001145 2.6e-11 72.4 85 42.4
Duzib052G0867 Durio zibethinus HOM05D000237 ORTHO05D001145 3.4e-11 72.0 125 36.0
Duzib132G0397 Durio zibethinus HOM05D000237 ORTHO05D001145 3.4e-11 72.0 115 41.7
MD05G1121300 Malus domestica HOM05D000237 ORTHO05D001145 4.4e-11 71.6 115 36.5
COL.COLO4_17332 Corchorus olitorius HOM05D000237 ORTHO05D001145 5.7e-11 71.2 117 35.9
Manes.11G094000 Manihot esculenta HOM05D000237 ORTHO05D001145 7.5e-11 70.9 117 33.3
Hund06434 Selenicereus undatus HOM05D000237 ORTHO05D001145 9.8e-11 70.5 85 41.2
PGR142G0871 Punica granatum HOM05D000237 ORTHO05D001145 1.3e-10 70.1 127 37.8
QL11p050194 Quercus lobata HOM05D000237 ORTHO05D001145 1.3e-10 70.1 125 34.4
Potri.004G175100 Populus trichocarpa HOM05D000237 ORTHO05D001145 1.7e-10 69.7 117 33.3
Potri.009G134700 Populus trichocarpa HOM05D000237 ORTHO05D001145 1.7e-10 69.7 85 40.0
TWI75G0161 Tripterygium wilfordii HOM05D000237 ORTHO05D001145 1.7e-10 69.7 85 41.2
CiPaw.06G122200 Carya illinoinensis HOM05D000237 ORTHO05D001145 2.8e-10 68.9 88 42.0
Glyma.11G108000 Glycine max HOM05D000237 ORTHO05D001145 2.8e-10 68.9 83 41.0
Medtr4g073140 Medicago truncatula HOM05D000237 ORTHO05D001145 2.8e-10 68.9 83 41.0
vmacro17350 Vaccinium macrocarpon HOM05D000237 ORTHO05D001145 2.8e-10 68.9 116 39.7
Ca_19070_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 3.7e-10 68.6 83 41.0
Hma1.2p1_0163F.1_g072450 Hydrangea macrophylla HOM05D000237 ORTHO05D001145 4.8e-10 68.2 85 43.5
Rhsim05G0060200 Rhododendron simsii HOM05D000237 ORTHO05D001145 4.8e-10 68.2 115 40.9
VMungo1127G1359 Vigna mungo HOM05D000237 ORTHO05D001145 4.8e-10 68.2 83 42.2
Prupe.8G165200 Prunus persica HOM05D000237 ORTHO05D001145 6.3e-10 67.8 115 33.9
Sabra04G0116800 Salix brachista HOM05D000237 ORTHO05D001145 6.3e-10 67.8 85 38.8
Eucgr.I01415 Eucalyptus grandis HOM05D000237 ORTHO05D001145 8.3e-10 67.4 85 41.2
TPR.G39227 Trifolium pratense HOM05D000237 ORTHO05D001145 8.3e-10 67.4 83 41.0
Glyma.12G032900 Glycine max HOM05D000237 ORTHO05D001145 1.4e-09 66.6 83 39.8
Lj1g0028167 Lotus japonicus HOM05D000237 ORTHO05D001145 1.4e-09 66.6 80 40.0
AUR62013035 Chenopodium quinoa HOM05D000237 ORTHO05D001145 2.4e-09 65.9 125 36.0
Ah.01g022970 Amaranthus hybridus HOM05D000237 ORTHO05D001145 3.1e-09 65.5 125 34.4
Phvul.011G035600 Phaseolus vulgaris HOM05D000237 ORTHO05D001145 3.1e-09 65.5 83 42.2
Ah.01g008450 Amaranthus hybridus HOM05D000237 ORTHO05D001145 4.1e-09 65.1 85 38.8
PSO541G1208 Papaver somniferum HOM05D000237 ORTHO05D001145 4.1e-09 65.1 121 33.9
PSO675G7812 Papaver somniferum HOM05D000237 ORTHO05D001145 4.1e-09 65.1 121 33.9
TPR.G38470 Trifolium pratense HOM05D000237 ORTHO05D001145 4.1e-09 65.1 117 37.6
Psat7g175880 Pisum sativum HOM05D000237 ORTHO05D001145 5.4e-09 64.7 115 39.1
arahy.Tifrunner.gnm1.ann1.RN7VB5 Arachis hypogaea HOM05D000237 ORTHO05D001145 7.0e-09 64.3 83 38.6
Lj3g0014103 Lotus japonicus HOM05D000237 ORTHO05D001145 7.0e-09 64.3 83 38.6
Nn6g31994 Nelumbo nucifera HOM05D000237 ORTHO05D001145 9.1e-09 63.9 85 41.2
Sc08g0002960 Simmondsia chinensis HOM05D000237 ORTHO05D001145 9.1e-09 63.9 85 40.0
MBI08_g29139_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D001145 1.2e-08 63.5 116 35.3
RcHm_v2.0_Chr6g0251891 Rosa chinensis HOM05D000237 ORTHO05D001145 1.2e-08 63.5 90 34.4
HanXRQChr04g0112341 Helianthus annuus HOM05D000237 ORTHO05D001145 1.6e-08 63.2 85 37.6
arahy.Tifrunner.gnm1.ann1.4SLH2G Arachis hypogaea HOM05D000237 ORTHO05D001145 2.0e-08 62.8 80 37.5
FAN20G0987 Fragaria x ananassa HOM05D000237 ORTHO05D001145 2.0e-08 62.8 83 37.3
Carub.0002s2416 Capsella rubella HOM05D000237 ORTHO05D001145 3.5e-08 62.0 116 34.5
AUR62010043 Chenopodium quinoa HOM05D000237 ORTHO05D001145 4.5e-08 61.6 85 40.0
GSVIVG01024026001 Vitis vinifera HOM05D000237 ORTHO05D001145 4.5e-08 61.6 90 36.7
FvH4_1g24700 Fragaria vesca HOM05D000237 ORTHO05D001145 5.9e-08 61.2 85 42.4
FvH4_2g01230 Fragaria vesca HOM05D000237 ORTHO05D001145 5.9e-08 61.2 83 36.1
FAN19G1791 Fragaria x ananassa HOM05D000237 ORTHO05D001145 5.9e-08 61.2 85 42.4
FAN24G0311 Fragaria x ananassa HOM05D000237 ORTHO05D001145 5.9e-08 61.2 83 36.1
FAN28G2239 Fragaria x ananassa HOM05D000237 ORTHO05D001145 5.9e-08 61.2 85 42.4
FAN26G2988 Fragaria x ananassa HOM05D000237 ORTHO05D001145 7.7e-08 60.8 85 42.4
ClCG02G011910 Citrullus lanatus HOM05D000237 ORTHO05D001145 1.0e-07 60.5 117 29.9
RcHm_v2.0_Chr2g0122201 Rosa chinensis HOM05D000237 ORTHO05D001145 1.0e-07 60.5 85 42.4
TAR625G0414 Trochodendron aralioides HOM05D000237 ORTHO05D001145 1.3e-07 60.1 116 37.1
BcaC08g47622 Brassica carinata HOM05D000237 ORTHO05D001145 1.7e-07 59.7 112 33.9
C06p51440 Brassica napus HOM05D000237 ORTHO05D001145 1.7e-07 59.7 112 33.9
BolC6t40162H Brassica oleracea HOM05D000237 ORTHO05D001145 1.7e-07 59.7 112 33.9
BraA07t31803Z Brassica rapa HOM05D000237 ORTHO05D001145 1.7e-07 59.7 111 34.2
CDE05G3406 Ceratophyllum demersum HOM05D000237 ORTHO05D001145 1.7e-07 59.7 115 32.2
Aqoxy6G02169 Aquilegia oxysepala HOM05D000237 ORTHO05D001145 2.3e-07 59.3 90 35.6
BcaC03g15726 Brassica carinata HOM05D000237 ORTHO05D001145 2.3e-07 59.3 111 35.1
A07p42820 Brassica napus HOM05D000237 ORTHO05D001145 2.3e-07 59.3 111 34.2
BolC2t09472H Brassica oleracea HOM05D000237 ORTHO05D001145 2.3e-07 59.3 111 35.1
FAN27G2685 Fragaria x ananassa HOM05D000237 ORTHO05D001145 2.3e-07 59.3 82 35.4
ATR1001G006 Amborella trichopoda HOM05D000237 ORTHO05D001145 2.9e-07 58.9 110 34.5
MD15G1134800 Malus domestica HOM05D000237 ORTHO05D001145 2.9e-07 58.9 115 34.8
A02p21200 Brassica napus HOM05D000237 ORTHO05D001145 3.8e-07 58.5 111 35.1
C02p34420 Brassica napus HOM05D000237 ORTHO05D001145 3.8e-07 58.5 111 35.1
Ciclev10000480m.g Citrus clementina HOM05D000237 ORTHO05D001145 3.8e-07 58.5 111 34.2
CDE05G2131 Ceratophyllum demersum HOM05D000237 ORTHO05D001145 5.0e-07 58.2 92 33.7
Ca_15301_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 5.0e-07 58.2 115 35.7
AL2G37470 Arabidopsis lyrata HOM05D000237 ORTHO05D001145 6.6e-07 57.8 116 33.6
AT1G77280 Arabidopsis thaliana HOM05D000237 ORTHO05D001145 6.6e-07 57.8 116 33.6
Ciclev10000358m.g Citrus clementina HOM05D000237 ORTHO05D001145 6.6e-07 57.8 115 35.7
Atru.chr4.974 Acer truncatum HOM05D000237 ORTHO05D001145 8.6e-07 57.4 111 35.1
Carub.0001s2102 Capsella rubella HOM05D000237 ORTHO05D001145 8.6e-07 57.4 118 31.4
CARHR070770 Cardamine hirsuta HOM05D000237 ORTHO05D001145 8.6e-07 57.4 116 33.6
MELO3C020817.2 Cucumis melo HOM05D000237 ORTHO05D001145 8.6e-07 57.4 82 34.1
CsaV3_2G016090 Cucumis sativus L. HOM05D000237 ORTHO05D001145 8.6e-07 57.4 82 34.1
Thhalv10018181m.g Eutrema salsugineum HOM05D000237 ORTHO05D001145 8.6e-07 57.4 116 33.6
Sed0008557 Sechium edule HOM05D000237 ORTHO05D001145 1.1e-06 57.0 80 35.0
THA.LOC104812080 Tarenaya hassleriana HOM05D000237 ORTHO05D001145 1.1e-06 57.0 122 32.8
AUR62000511 Chenopodium quinoa HOM05D000237 ORTHO05D001145 1.5e-06 56.6 106 36.8
MELO3C023218.2 Cucumis melo HOM05D000237 ORTHO05D001145 1.5e-06 56.6 83 39.8
PSO528G0205 Papaver somniferum HOM05D000237 ORTHO05D001145 1.5e-06 56.6 85 37.6
Prupe.4G275600 Prunus persica HOM05D000237 ORTHO05D001145 1.5e-06 56.6 85 36.5
SGA_v2.0_scaffold119G32797 Striga asiatica HOM05D000237 ORTHO05D001145 1.5e-06 56.6 113 38.1
Aa31LG4G7290 Aethionema arabicum HOM05D000237 ORTHO05D001145 1.9e-06 56.2 116 33.6
Aqoxy6G00306 Aquilegia oxysepala HOM05D000237 ORTHO05D001145 1.9e-06 56.2 117 33.3
AL1G34730 Arabidopsis lyrata HOM05D000237 ORTHO05D001145 1.9e-06 56.2 88 35.2
Nn5g30781 Nelumbo nucifera HOM05D000237 ORTHO05D001145 1.9e-06 56.2 85 32.9
Psat5g060720 Pisum sativum HOM05D000237 ORTHO05D001145 1.9e-06 56.2 111 36.0
Sp5g32450 Schrenkiella parvula HOM05D000237 ORTHO05D001145 1.9e-06 56.2 116 32.8
Hund27726 Selenicereus undatus HOM05D000237 ORTHO05D001145 1.9e-06 56.2 111 35.1
Hund27730 Selenicereus undatus HOM05D000237 ORTHO05D001145 1.9e-06 56.2 111 35.1
C05p20580 Brassica napus HOM05D000237 ORTHO05D001145 2.5e-06 55.8 118 30.5
BolC5t30756H Brassica oleracea HOM05D000237 ORTHO05D001145 2.5e-06 55.8 118 30.5
CsaV3_2G019550 Cucumis sativus L. HOM05D000237 ORTHO05D001145 2.5e-06 55.8 83 36.1
MSTRG.25356 Avicennia marina HOM05D000237 ORTHO05D001145 3.3e-06 55.5 115 35.7
CSS0014669 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 3.3e-06 55.5 115 33.0
CSS0019791 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 3.3e-06 55.5 115 33.0
COL.COLO4_35819 Corchorus olitorius HOM05D000237 ORTHO05D001145 3.3e-06 55.5 103 32.0
PSO170G0738 Papaver somniferum HOM05D000237 ORTHO05D001145 3.3e-06 55.5 85 36.5
Rhsim11G0071900 Rhododendron simsii HOM05D000237 ORTHO05D001145 3.3e-06 55.5 115 33.0
Thecc.01G137700 Theobroma cacao HOM05D000237 ORTHO05D001145 3.3e-06 55.5 109 33.0
AUR62006856 Chenopodium quinoa HOM05D000237 ORTHO05D001145 4.2e-06 55.1 106 35.8
Dinv14697 Davidia involucrata HOM05D000237 ORTHO05D001145 4.2e-06 55.1 115 33.9
Migut.C01069 Erythranthe guttata HOM05D000237 ORTHO05D001145 4.2e-06 55.1 115 33.9
Lalb_Chr19g0139091 Lupinus albus HOM05D000237 ORTHO05D001145 4.2e-06 55.1 83 34.9
SGA_v2.0_scaffold52G18916 Striga asiatica HOM05D000237 ORTHO05D001145 4.2e-06 55.1 115 33.9
TPR.G28194 Trifolium pratense HOM05D000237 ORTHO05D001145 4.2e-06 55.1 111 35.1
vmacro00867 Vaccinium macrocarpon HOM05D000237 ORTHO05D001145 4.2e-06 55.1 117 35.0
AT1G21590 Arabidopsis thaliana HOM05D000237 ORTHO05D001145 5.5e-06 54.7 118 29.7
COL.COLO4_07938 Corchorus olitorius HOM05D000237 ORTHO05D016966 5.5e-06 54.7 41 56.1
DCAR_003590 Daucus carota HOM05D000237 ORTHO05D001145 5.5e-06 54.7 115 33.0
MBI06_g35215_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D001145 5.5e-06 54.7 111 32.4
Sp1g19120 Schrenkiella parvula HOM05D000237 ORTHO05D001145 5.5e-06 54.7 109 29.4
Hund00023 Selenicereus undatus HOM05D000237 ORTHO05D001145 5.5e-06 54.7 109 31.2
VMungo1309G0232 Vigna mungo HOM05D000237 ORTHO05D001145 5.5e-06 54.7 115 34.8
Actinidia20027 Actinidia chinensis HOM05D000237 ORTHO05D001145 7.2e-06 54.3 109 33.9
Actinidia21274 Actinidia chinensis HOM05D000237 ORTHO05D001145 7.2e-06 54.3 115 34.8
HanXRQChr02g0045131 Helianthus annuus HOM05D000237 ORTHO05D001145 7.2e-06 54.3 116 32.8
Lalb_Chr01g0001891 Lupinus albus HOM05D000237 ORTHO05D001145 7.2e-06 54.3 92 31.5
Os03g0241600 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D001145 7.2e-06 54.3 83 37.3
THA.LOC104809993 Tarenaya hassleriana HOM05D000237 ORTHO05D001145 7.2e-06 54.3 116 33.6
Actinidia15210 Actinidia chinensis HOM05D000237 ORTHO05D001145 9.5e-06 53.9 115 33.9
Aqoxy5G02306 Aquilegia oxysepala HOM05D000237 ORTHO05D001145 9.5e-06 53.9 106 34.9
Medtr3g117850 Medicago truncatula HOM05D000237 ORTHO05D001145 9.5e-06 53.9 87 35.6
Nn5g28443 Nelumbo nucifera HOM05D000237 ORTHO05D001145 9.5e-06 53.9 115 33.9
PGR119G2061 Punica granatum HOM05D000237 ORTHO05D001145 9.5e-06 53.9 83 38.6
Sed0022076 Sechium edule HOM05D000237 ORTHO05D001145 9.5e-06 53.9 115 34.8


User provided reference genes

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