Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 1.3e-171 606.3 313 100.0
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.2e-82 310.8 328 57.6
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 4.1e-72 275.8 332 53.6
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.6e-68 263.8 319 51.1
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 6.8e-67 258.5 358 46.9
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 3.2e-64 249.6 330 48.5
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.3e-62 244.2 330 46.1
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 6.2e-60 235.3 334 47.6
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 1.1e-59 234.6 337 47.8
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.9e-56 223.8 356 41.6
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 7.1e-56 221.9 329 44.1
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 7.8e-55 218.4 325 45.8
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 8.7e-54 214.9 339 44.2
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 8.7e-54 214.9 334 44.9
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 5.6e-53 212.2 287 45.3
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 7.3e-53 211.8 339 44.0
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 3.6e-52 209.5 330 44.5
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 1.5e-50 204.1 335 44.2
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 4.4e-50 202.6 319 45.5
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 2.2e-49 200.3 323 44.0
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 7.1e-48 195.3 339 41.3
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 6.0e-47 192.2 344 42.2
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 6.0e-47 192.2 349 38.4
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 1.0e-46 191.4 343 42.3
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 2.3e-46 190.3 321 38.6
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 6.6e-46 188.7 314 43.6
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 2.5e-45 186.8 330 42.7
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 7.3e-45 185.3 338 37.6
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 9.6e-45 184.9 325 40.6
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 3.6e-44 183.0 312 38.8
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 1.1e-43 181.4 318 41.8
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.1e-43 181.4 341 37.0
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 1.4e-43 181.0 334 38.0
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 2.4e-43 180.3 323 39.9
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 4.0e-43 179.5 325 38.2
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 5.3e-43 179.1 323 37.8
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 6.9e-43 178.7 276 42.4
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 9.0e-43 178.3 345 39.4
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 9.0e-43 178.3 345 39.1
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 2.6e-42 176.8 333 39.3
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 9.9e-42 174.9 323 39.0
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.3e-41 174.5 316 41.1
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.2e-41 173.7 321 38.9
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 2.2e-41 173.7 337 37.4
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 3.8e-41 172.9 285 40.0
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.4e-40 171.0 329 38.0
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 3.2e-40 169.9 351 37.0
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 7.1e-40 168.7 342 36.5
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 7.1e-40 168.7 340 36.5
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 1.6e-39 167.5 322 36.3
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.7e-39 166.8 466 32.6
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 7.9e-39 165.2 335 35.5
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 1.8e-38 164.1 318 36.2
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.8e-38 164.1 342 36.0
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 1.8e-38 164.1 332 37.3
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.3e-38 163.7 342 36.0
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 3.9e-38 162.9 321 40.5
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 5.1e-38 162.5 322 37.9
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.7e-38 162.2 335 36.1
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.7e-38 161.8 335 37.0
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.5e-37 161.0 335 36.1
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.9e-37 160.6 326 39.9
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.3e-37 159.8 321 37.1
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 7.4e-37 158.7 324 36.1
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.8e-36 156.8 363 34.4
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.8e-36 156.8 316 36.7
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 4.8e-36 156.0 219 46.1
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 6.2e-36 155.6 330 38.2
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 8.1e-36 155.2 325 35.4
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 1.1e-35 154.8 325 36.0
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.4e-35 154.5 332 36.1
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 3.1e-35 153.3 327 37.3
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 5.3e-35 152.5 341 34.9
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 6.9e-35 152.1 314 35.4
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 9.0e-35 151.8 326 35.3
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.0e-34 150.6 317 36.0
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 2.6e-34 150.2 322 37.0
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 4.5e-34 149.4 324 34.0
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 5.8e-34 149.1 320 37.5
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 7.6e-34 148.7 321 35.8
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 1.0e-33 148.3 333 36.9
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 1.7e-33 147.5 322 35.4
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 1.7e-33 147.5 342 34.8
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 4.9e-33 146.0 327 37.9
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 4.9e-33 146.0 290 38.6
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 4.9e-33 146.0 324 35.8
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 1.1e-32 144.8 327 34.9
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 1.2e-31 141.4 320 35.9
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 6.0e-31 139.0 323 36.5
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 6.0e-31 139.0 323 36.5
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 6.0e-31 139.0 328 36.9
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 1.0e-30 138.3 320 36.6
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.3e-30 137.9 333 36.6
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 1.3e-30 137.9 314 33.4
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 8.7e-30 135.2 326 36.5
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 1.5e-29 134.4 323 35.9
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 1.5e-29 134.4 326 35.0
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.9e-29 134.0 324 34.9
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 2.5e-29 133.7 345 32.8
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 4.3e-29 132.9 324 35.8
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 7.4e-29 132.1 330 34.5
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 9.6e-29 131.7 330 35.5
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 9.6e-29 131.7 340 34.7
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 2.1e-28 130.6 329 34.3
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 2.8e-28 130.2 322 36.3
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 2.8e-28 130.2 279 37.6
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 3.7e-28 129.8 324 36.4
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 3.7e-28 129.8 329 34.3
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 4.8e-28 129.4 311 34.1
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 6.2e-28 129.0 325 33.8
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.8e-27 127.5 252 33.7
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 3.1e-27 126.7 322 36.0
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 5.3e-27 125.9 298 33.9
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.5e-26 124.4 269 39.4
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 2.0e-26 124.0 349 31.2
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 3.8e-25 119.8 344 33.1
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.8e-25 119.8 381 30.7
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 4.9e-25 119.4 345 33.6
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 1.1e-24 118.2 323 34.7
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 1.9e-24 117.5 324 34.6
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 2.5e-24 117.1 230 33.9
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 2.5e-24 117.1 321 34.3
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.5e-24 117.1 337 31.2
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 3.2e-24 116.7 223 35.9
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 4.2e-24 116.3 226 35.8
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 1.2e-23 114.8 231 35.1
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 1.6e-23 114.4 337 32.9
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.1e-23 114.0 383 30.0
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 4.6e-23 112.8 320 32.2
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 1.0e-22 111.7 322 34.2
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.3e-22 111.3 170 43.5
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 3.0e-22 110.2 280 32.5
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 3.9e-22 109.8 324 33.6
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 5.1e-22 109.4 334 29.9
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.7e-22 109.0 268 32.5
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 8.7e-22 108.6 325 31.4
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 1.1e-21 108.2 199 39.7
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 4.3e-21 106.3 337 28.5
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 7.4e-21 105.5 319 31.3
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 9.7e-21 105.1 168 42.3
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 1.3e-20 104.8 324 33.0
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 4.8e-20 102.8 322 31.4
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 8.2e-20 102.1 340 31.8
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 1.1e-19 101.7 332 32.5
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 2.4e-19 100.5 255 29.0
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 6.9e-19 99.0 288 29.9
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 1.0e-17 95.1 185 40.0
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 3.8e-17 93.2 325 29.8
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.9e-16 90.9 288 27.4
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 1.2e-15 88.2 308 29.9
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 6.1e-15 85.9 201 36.8
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 4.3e-13 79.7 226 32.3
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 2.2e-12 77.4 296 25.7
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 6.3e-12 75.9 150 36.0
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 1.1e-11 75.1 346 26.0
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 1.4e-11 74.7 235 28.1
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 1.8e-11 74.3 375 26.7
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 1.8e-11 74.3 188 30.9
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.4e-11 73.9 115 44.3
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 2.4e-11 73.9 332 28.3
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 9.1e-11 72.0 352 26.1
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 2.0e-10 70.9 140 40.0
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.6e-10 70.5 52 63.5
CAN.G183.13 Capsicum annuum HOM05D003841 ORTHO05D004602 1.0e-09 68.6 221 30.8
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 6.5e-09 65.9 338 25.4
CAN.G1207.10 Capsicum annuum HOM05D003841 ORTHO05D004602 7.2e-08 62.4 64 57.8
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 2.7e-07 60.5 154 31.2
Pp3c17_23830 Physcomitrium patens HOM05D039964 ORTHO05D002809 6.1e-07 59.3 369 23.6
VMungo1080G1564 Vigna mungo HOM05D003841 ORTHO05D004602 6.1e-07 59.3 170 30.0
CAN.G935.4 Capsicum annuum HOM05D003841 ORTHO05D004602 3.9e-06 56.6 90 36.7
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 3.9e-06 56.6 53 47.2
Pp3c15_19720 Physcomitrium patens HOM05D002766 ORTHO05D002809 6.7e-06 55.8 237 24.9
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 8.8e-06 55.5 101 38.6


User provided reference genes

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