Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 1.8e-48 195.7 102 100.0
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.6e-44 182.6 99 96.0
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 7.0e-29 130.6 100 70.0
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 3.5e-28 128.3 100 70.0
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 5.5e-26 120.9 99 65.7
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 1.2e-25 119.8 93 68.8
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 3.6e-25 118.2 99 65.7
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 6.1e-25 117.5 99 63.6
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.8e-24 115.9 93 65.6
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 2.3e-24 115.5 100 64.0
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.0e-24 115.2 99 64.6
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 3.0e-24 115.2 98 62.2
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 2.6e-23 112.1 99 62.6
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 3.4e-23 111.7 96 65.6
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 4.4e-23 111.3 98 64.3
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 5.7e-23 110.9 96 61.5
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 7.5e-23 110.5 98 61.2
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 9.8e-23 110.2 99 62.6
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 2.2e-22 109.0 98 61.2
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 2.8e-22 108.6 97 61.9
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 4.9e-22 107.8 96 61.5
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.4e-21 106.3 99 60.6
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.4e-21 106.3 67 76.1
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.8e-21 105.9 99 60.6
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.4e-21 105.5 93 64.5
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.4e-21 105.5 99 59.6
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.4e-21 105.5 99 59.6
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.1e-21 105.1 97 61.9
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 3.1e-21 105.1 96 63.5
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 3.1e-21 105.1 98 57.1
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 5.4e-21 104.4 99 57.6
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 7.0e-21 104.0 93 63.4
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 7.0e-21 104.0 96 62.5
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 9.2e-21 103.6 99 57.6
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 1.2e-20 103.2 98 57.1
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.6e-20 102.8 93 62.4
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 1.6e-20 102.8 64 76.6
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 2.7e-20 102.1 98 59.2
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 2.7e-20 102.1 98 58.2
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 2.7e-20 102.1 98 55.1
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 3.5e-20 101.7 98 59.2
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 3.5e-20 101.7 62 82.3
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 4.5e-20 101.3 96 59.4
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 5.9e-20 100.9 98 56.1
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 7.8e-20 100.5 89 62.9
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 1.0e-19 100.1 98 58.2
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.0e-19 100.1 64 78.1
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 1.0e-19 100.1 98 57.1
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.7e-19 99.4 66 74.2
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.7e-19 99.4 98 58.2
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 1.7e-19 99.4 98 58.2
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.7e-19 99.4 98 58.2
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 1.7e-19 99.4 98 58.2
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 1.7e-19 99.4 106 51.9
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 1.7e-19 99.4 95 60.0
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 2.3e-19 99.0 91 61.5
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 2.3e-19 99.0 94 59.6
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 2.9e-19 98.6 62 79.0
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 5.0e-19 97.8 96 56.2
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 6.6e-19 97.4 64 75.0
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 6.6e-19 97.4 64 75.0
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 6.6e-19 97.4 91 60.4
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 8.6e-19 97.1 100 54.0
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 8.6e-19 97.1 60 80.0
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 8.6e-19 97.1 93 60.2
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.1e-18 96.7 100 55.0
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 1.9e-18 95.9 96 56.2
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.9e-18 95.9 65 73.8
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.3e-18 95.1 95 58.9
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 3.3e-18 95.1 97 57.7
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 4.3e-18 94.7 98 55.1
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 4.3e-18 94.7 91 54.9
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 5.6e-18 94.4 95 58.9
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 7.3e-18 94.0 66 69.7
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.2e-17 93.2 95 56.8
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.6e-17 92.8 64 73.4
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 2.1e-17 92.4 91 56.0
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 2.1e-17 92.4 83 65.1
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.8e-17 92.0 91 56.0
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 4.7e-17 91.3 80 63.8
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 4.7e-17 91.3 98 54.1
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 2.3e-16 89.0 64 70.3
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 2.3e-16 89.0 88 53.4
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 3.0e-16 88.6 96 50.0
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 4.0e-16 88.2 57 77.2
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 4.0e-16 88.2 88 55.7
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 3.4e-15 85.1 92 52.2
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 3.4e-15 85.1 102 53.9
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 4.4e-15 84.7 86 52.3
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.2e-14 82.4 96 51.0
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 4.9e-14 81.3 95 47.4
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 6.4e-14 80.9 109 45.9
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 6.4e-14 80.9 91 51.6
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.8e-13 79.3 96 51.0
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.8e-13 79.3 91 48.4
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 7.0e-13 77.4 93 51.6
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 9.2e-13 77.0 63 61.9
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 2.7e-12 75.5 98 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 3.5e-12 75.1 65 56.9
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.5e-12 75.1 66 56.1
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 4.6e-12 74.7 93 49.5
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 7.8e-12 73.9 60 56.7
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 7.8e-12 73.9 66 56.1
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 5.2e-08 61.2 62 56.5
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.2e-07 60.1 34 79.4
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 2.9e-06 55.5 36 63.9
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 6.4e-06 54.3 65 49.2


User provided reference genes

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