Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 1.4e-177 627.1 602 100.0
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 3.1e-108 396.7 598 72.6
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 5.8e-107 392.5 600 76.2
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 5.8e-107 392.5 600 78.7
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.7e-106 391.0 600 76.7
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.0e-98 365.2 600 72.0
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 1.3e-98 364.8 600 68.7
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 4.9e-98 362.8 600 71.5
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 4.2e-97 359.8 598 67.6
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 3.9e-95 353.2 598 70.1
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 4.3e-94 349.7 598 69.4
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 9.6e-94 348.6 598 69.7
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.7e-93 346.7 598 67.1
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 1.1e-92 345.1 598 72.4
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.2e-91 341.7 598 68.2
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.0e-90 338.6 600 69.2
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 1.3e-90 338.2 600 69.8
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.9e-89 334.3 600 66.8
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 5.5e-89 332.8 598 69.6
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 7.2e-89 332.4 609 60.1
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.1e-86 325.1 602 67.9
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 5.7e-86 322.8 598 70.1
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 8.2e-85 318.9 600 67.2
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.8e-84 317.8 602 62.6
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.8e-84 317.8 598 64.7
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 5.3e-84 316.2 602 66.9
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 6.9e-84 315.8 600 68.5
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 1.2e-83 315.1 600 65.0
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 2.0e-83 314.3 600 66.0
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 3.4e-83 313.5 600 67.2
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 4.5e-83 313.2 600 64.8
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 5.9e-83 312.8 600 64.3
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 1.0e-82 312.0 578 64.9
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 2.9e-82 310.5 600 65.8
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 8.5e-82 308.9 600 66.5
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.1e-81 308.5 600 64.5
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 1.1e-81 308.5 517 75.4
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 2.5e-81 307.4 558 60.8
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 5.5e-81 306.2 334 58.4
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.8e-79 301.2 600 66.3
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 1.8e-79 301.2 606 65.0
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 4.4e-78 296.6 598 64.2
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 5.7e-78 296.2 600 61.8
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 9.7e-78 295.4 576 45.0
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 3.7e-77 293.5 519 75.1
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 2.4e-76 290.8 579 70.8
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 1.5e-75 288.1 598 67.9
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 2.6e-75 287.3 601 61.6
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 3.4e-75 287.0 505 73.5
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 3.4e-75 287.0 598 62.4
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 7.7e-75 285.8 606 63.9
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 7.7e-75 285.8 598 63.4
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 1.3e-74 285.0 539 72.7
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.7e-74 284.6 330 57.3
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 9.4e-73 278.9 581 66.8
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 6.7e-71 272.7 604 58.4
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 2.2e-69 267.7 580 63.6
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 3.7e-69 266.9 660 56.7
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.1e-68 265.4 600 46.5
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 1.4e-68 265.0 598 64.2
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 5.3e-68 263.1 557 65.2
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 5.3e-68 263.1 603 50.7
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 3.5e-67 260.4 579 64.1
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 5.9e-67 259.6 600 63.3
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.7e-66 258.1 603 57.2
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 4.2e-65 253.4 599 64.1
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 6.7e-63 246.1 591 50.1
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 8.8e-63 245.7 604 56.8
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.0e-62 244.6 601 61.1
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 4.4e-62 243.4 602 58.3
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 5.7e-62 243.0 598 60.4
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 9.7e-62 242.3 607 58.5
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 1.7e-61 241.5 617 60.9
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 3.7e-61 240.4 238 68.5
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 1.1e-60 238.8 598 59.5
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 4.1e-60 236.9 598 61.2
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 1.2e-59 235.3 643 58.2
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 7.7e-59 232.6 598 61.7
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 4.2e-57 226.9 698 56.0
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 3.6e-56 223.8 446 75.6
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 8.0e-56 222.6 598 60.5
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 8.0e-56 222.6 611 53.7
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 1.0e-55 222.2 599 56.8
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.4e-55 221.9 601 59.1
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.0e-55 220.7 601 59.1
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 9.8e-54 215.7 579 61.0
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 4.8e-53 213.4 606 59.1
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 8.3e-53 212.6 615 52.2
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 7.0e-52 209.5 328 48.5
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 7.0e-52 209.5 599 58.1
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 7.7e-51 206.1 600 60.2
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 2.3e-50 204.5 586 59.7
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 9.5e-49 199.1 601 58.2
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 1.2e-48 198.7 535 63.9
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 2.1e-48 198.0 610 52.8
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 8.0e-48 196.1 334 45.5
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.0e-47 195.7 577 58.1
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 1.2e-46 192.2 237 48.5
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 1.7e-45 188.3 598 59.0
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 3.6e-40 170.6 560 56.4
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 1.5e-38 165.2 598 57.9
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 2.0e-38 164.9 579 51.8
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 5.8e-30 136.7 150 49.3
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 3.0e-26 124.4 139 47.5
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.5e-25 122.1 75 82.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.5e-25 122.1 75 82.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 4.3e-25 120.6 75 81.3
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 9.5e-25 119.4 75 81.3
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 1.6e-24 118.6 160 46.2
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 1.6e-24 118.6 160 46.2
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 1.6e-24 118.6 160 46.2
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 2.1e-24 118.2 120 54.2
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.1e-23 115.9 98 66.3
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.1e-23 115.9 75 76.0
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.7e-21 108.6 121 59.5
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 3.5e-19 100.9 252 28.2
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 5.6e-17 93.6 60 76.7
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 2.1e-16 91.7 53 83.0
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 7.6e-14 83.2 75 49.3
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 1.9e-12 78.6 103 44.7
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 4.6e-11 73.9 117 41.0
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 1.9e-09 68.6 134 42.5
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 4.3e-09 67.4 115 39.1
PRCOL_00002721 Prasinoderma coloniale HOM05D006220 ORTHO05D007590 3.1e-07 61.2 323 25.1
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 7.6e-06 56.6 217 30.0
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 9.9e-06 56.2 39 69.2


User provided reference genes

Program Settings