Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 1.3e-115 419.9 224 100.0
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 1.7e-51 206.8 174 69.0
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 1.2e-49 200.7 171 69.0
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 4.3e-47 192.2 172 65.1
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 2.4e-42 176.4 123 73.2
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 1.2e-41 174.1 176 58.0
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 1.2e-41 174.1 144 66.0
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 1.6e-41 173.7 123 70.7
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 2.1e-41 173.3 147 66.0
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 2.1e-41 173.3 147 66.0
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 2.7e-41 172.9 123 74.8
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 4.6e-41 172.2 165 60.6
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 1.0e-40 171.0 120 75.0
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 3.9e-40 169.1 121 73.6
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 3.9e-40 169.1 122 73.8
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 5.1e-40 168.7 123 70.7
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 5.1e-40 168.7 152 64.5
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 5.1e-40 168.7 118 78.0
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 6.6e-40 168.3 138 65.2
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 6.6e-40 168.3 122 73.8
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 8.7e-40 167.9 136 67.6
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 1.1e-39 167.5 125 72.0
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 1.5e-39 167.2 137 67.2
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 1.5e-39 167.2 142 66.2
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.9e-39 166.8 140 66.4
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 1.9e-39 166.8 121 72.7
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 1.9e-39 166.8 159 59.1
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 2.5e-39 166.4 166 56.0
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 3.3e-39 166.0 142 66.2
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 3.3e-39 166.0 159 59.1
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 4.3e-39 165.6 122 72.1
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 4.3e-39 165.6 123 70.7
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 4.3e-39 165.6 123 69.9
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 7.4e-39 164.9 133 66.2
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 9.6e-39 164.5 145 63.4
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.6e-38 163.7 131 66.4
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 1.6e-38 163.7 158 58.9
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 2.1e-38 163.3 122 70.5
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 2.8e-38 162.9 120 71.7
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 2.8e-38 162.9 124 69.4
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 3.6e-38 162.5 123 74.8
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 3.6e-38 162.5 123 69.9
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 4.8e-38 162.2 133 65.4
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 6.2e-38 161.8 158 60.8
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 6.2e-38 161.8 121 71.1
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 1.1e-37 161.0 120 68.3
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 1.4e-37 160.6 150 58.0
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 1.4e-37 160.6 123 69.1
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.8e-37 160.2 123 66.7
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 2.4e-37 159.8 131 65.6
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 2.4e-37 159.8 131 65.6
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 3.1e-37 159.5 120 71.7
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 3.1e-37 159.5 133 64.7
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 3.1e-37 159.5 146 59.6
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.0e-37 159.1 123 65.9
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 6.9e-37 158.3 172 55.8
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 6.9e-37 158.3 122 68.9
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 6.9e-37 158.3 123 66.7
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 6.9e-37 158.3 138 63.8
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 9.0e-37 157.9 146 58.2
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 9.0e-37 157.9 122 67.2
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.2e-36 157.5 123 65.9
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 1.5e-36 157.1 142 61.3
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 2.6e-36 156.4 141 61.0
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 4.5e-36 155.6 208 48.1
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 5.8e-36 155.2 121 65.3
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.3e-35 154.1 123 64.2
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.3e-35 154.1 123 64.2
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 3.8e-35 152.5 123 73.2
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 4.2e-34 149.1 147 57.8
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 4.2e-34 149.1 124 65.3
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 7.1e-34 148.3 162 55.6
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 9.3e-34 147.9 127 64.6
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 1.6e-33 147.1 121 66.1
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 3.5e-33 146.0 121 64.5
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 6.0e-33 145.2 127 65.4
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 6.0e-33 145.2 127 63.0
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 7.9e-33 144.8 123 65.9
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 7.9e-33 144.8 162 55.6
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.0e-32 144.4 124 63.7
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 1.8e-32 143.7 162 55.6
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 3.0e-32 142.9 131 61.8
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 3.0e-32 142.9 123 65.0
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 3.0e-32 142.9 124 62.9
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 3.9e-32 142.5 127 65.4
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 3.9e-32 142.5 127 65.4
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 3.9e-32 142.5 127 65.4
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 3.9e-32 142.5 127 63.0
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 5.1e-32 142.1 135 61.5
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 6.7e-32 141.7 137 59.1
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 6.7e-32 141.7 127 63.0
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 8.7e-32 141.4 123 64.2
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 8.7e-32 141.4 123 64.2
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 1.1e-31 141.0 127 66.1
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.9e-31 140.2 126 67.5
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 4.3e-31 139.0 135 65.2
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 9.6e-31 137.9 177 50.3
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 2.1e-30 136.7 121 61.2
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 6.2e-30 135.2 126 67.5
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 2.4e-29 133.3 121 60.3
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 2.4e-29 133.3 123 68.3
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 3.4e-28 129.4 125 53.6
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 3.8e-27 125.9 124 63.7
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 1.9e-26 123.6 122 57.4
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 3.2e-26 122.9 122 59.8
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 7.1e-26 121.7 146 50.0
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 9.3e-26 121.3 174 46.0
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 2.1e-25 120.2 94 68.1
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 3.3e-23 112.8 128 63.3
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 1.3e-22 110.9 83 65.1
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 8.2e-22 108.2 75 69.3
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 8.2e-22 108.2 149 47.7
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 1.8e-21 107.1 189 40.2
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 1.8e-21 107.1 181 44.2
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 2.4e-21 106.7 93 63.4
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 2.4e-21 106.7 69 72.5
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 2.4e-21 106.7 92 60.9
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 1.5e-20 104.0 91 61.5
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 3.4e-20 102.8 83 63.9
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 5.9e-20 102.1 97 58.8
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 6.5e-19 98.6 75 62.7
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 4.2e-18 95.9 96 54.2
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.3e-16 90.1 125 41.6
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.5e-15 86.7 125 47.2
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 5.7e-15 85.5 105 50.5
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 8.2e-14 81.6 81 59.3
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 2.0e-12 77.0 67 55.2
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 5.9e-12 75.5 81 53.1
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 5.9e-12 75.5 81 53.1
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 4.2e-10 69.3 86 46.5
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 9.4e-10 68.2 50 66.0
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 3.0e-08 63.2 64 56.2
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.0e-07 60.5 63 55.6
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 7.4e-07 58.5 46 60.9
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 1.3e-06 57.8 87 39.1
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.7e-06 57.4 146 34.9


User provided reference genes

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