Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G04849 Striga asiatica HOM05D004783 ORTHO05D005581 4.0e-226 787.7 385 100.0
SGA_v2.0_scaffold21G09513 Striga asiatica HOM05D004783 ORTHO05D005581 6.4e-75 285.4 265 63.0
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 5.3e-53 212.6 251 50.6
Migut.L01576 Erythranthe guttata HOM05D004783 ORTHO05D005581 2.9e-51 206.8 134 73.9
Migut.J00915 Erythranthe guttata HOM05D004783 ORTHO05D005581 4.2e-50 203.0 153 64.7
SGA_v2.0_scaffold80G25712 Striga asiatica HOM05D000897 ORTHO05D000716 3.0e-48 196.8 244 52.9
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 4.3e-47 193.0 135 69.6
MSTRG.26477 Avicennia marina HOM05D004783 ORTHO05D005581 2.2e-46 190.7 134 67.2
SGA_v2.0_scaffold108G30882 Striga asiatica HOM05D004783 ORTHO05D005581 9.0e-45 185.3 90 100.0
CSS0049259 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 1.7e-43 181.0 136 61.8
CSS0029611 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 2.9e-43 180.3 136 61.8
CSS0039136 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 2.9e-43 180.3 136 61.8
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 2.9e-43 180.3 140 61.4
Nitab4.5_0003308g0060 Nicotiana tabacum HOM05D004783 ORTHO05D005581 1.1e-42 178.3 139 61.2
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 1.4e-42 177.9 140 60.0
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 1.9e-42 177.6 140 60.7
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 4.2e-42 176.4 140 60.0
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 5.5e-42 176.0 136 58.8
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 9.3e-42 175.3 140 60.7
Dinv06816 Davidia involucrata HOM05D004783 ORTHO05D005581 3.6e-41 173.3 136 59.6
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 2.3e-40 170.6 156 53.2
MD10G1047800 Malus domestica HOM05D004783 ORTHO05D005581 3.9e-40 169.9 135 60.0
Thecc.04G015500 Theobroma cacao HOM05D004783 ORTHO05D005581 3.9e-40 169.9 145 55.2
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 5.1e-40 169.5 144 54.9
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 6.7e-40 169.1 136 56.6
QL02p039304 Quercus lobata HOM05D004783 ORTHO05D005581 6.7e-40 169.1 136 58.1
Rhsim01G0260800 Rhododendron simsii HOM05D004783 ORTHO05D005581 6.7e-40 169.1 137 59.1
Actinidia24491 Actinidia chinensis HOM05D004783 ORTHO05D005581 1.1e-39 168.3 133 57.9
Prupe.8G057300 Prunus persica HOM05D004783 ORTHO05D005581 1.1e-39 168.3 135 58.5
TAR622G0302 Trochodendron aralioides HOM05D004783 ORTHO05D005581 1.1e-39 168.3 140 56.4
TAR622G0815 Trochodendron aralioides HOM05D004783 ORTHO05D005581 1.1e-39 168.3 140 56.4
MD05G1041400 Malus domestica HOM05D004783 ORTHO05D005581 1.5e-39 167.9 135 59.3
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 2.2e-38 164.1 136 55.9
Eucgr.J00651 Eucalyptus grandis HOM05D004783 ORTHO05D005581 3.7e-38 163.3 135 57.8
Lj1P662T20 Lonicera japonica HOM05D004783 ORTHO05D005581 3.7e-38 163.3 145 57.2
Cc06_g12410 Coffea canephora HOM05D004783 ORTHO05D005581 4.8e-38 162.9 134 60.4
Gohir.A02G106600 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.8e-37 161.0 136 56.6
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 3.1e-37 160.2 136 55.9
Gorai.003G087500 Gossypium raimondii HOM05D004783 ORTHO05D005581 4.1e-37 159.8 136 56.6
ECA232G0714 Erigeron canadensis HOM05D004783 ORTHO05D005581 5.3e-37 159.5 140 54.3
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 9.1e-37 158.7 135 54.1
ECA234G4279 Erigeron canadensis HOM05D004783 ORTHO05D005581 1.2e-36 158.3 136 54.4
EL10Ac2g04386 Beta vulgaris HOM05D004783 ORTHO05D005581 7.7e-36 155.6 145 51.7
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 7.7e-36 155.6 136 53.7
Cpa.g.c26548.5 Carica papaya HOM05D004783 ORTHO05D005581 1.3e-35 154.8 137 57.7
RcHm_v2.0_Chr5g0055041 Rosa chinensis HOM05D004783 ORTHO05D005581 2.2e-35 154.1 133 53.4
Sed0014805 Sechium edule HOM05D004783 ORTHO05D005581 2.2e-35 154.1 142 53.5
FvH4_3g29690 Fragaria vesca HOM05D004783 ORTHO05D005581 5.0e-35 152.9 133 53.4
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 8.5e-35 152.1 140 48.6
FAN18G1946 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.4e-34 151.4 133 53.4
FAN26G1702 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.4e-34 151.4 133 53.4
Gorai.012G085500 Gossypium raimondii HOM05D004783 ORTHO05D005581 1.4e-34 151.4 135 51.9
PSO063G6404 Papaver somniferum HOM05D004783 ORTHO05D005581 1.9e-34 151.0 139 52.5
Gohir.A05G337100 Gossypium hirsutum HOM05D004783 ORTHO05D005581 5.5e-34 149.4 135 51.9
Lalb_Chr04g0249471 Lupinus albus HOM05D004783 ORTHO05D005581 7.2e-34 149.1 136 50.7
FAN16G2696 Fragaria x ananassa HOM05D004783 ORTHO05D005581 9.4e-34 148.7 133 51.1
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 1.2e-33 148.3 135 56.3
PSO198G0081 Papaver somniferum HOM05D004783 ORTHO05D005581 1.6e-33 147.9 139 51.1
Gohir.D04G075700 Gossypium hirsutum HOM05D004783 ORTHO05D005581 2.1e-33 147.5 135 50.4
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 2.7e-33 147.1 134 51.5
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 3.6e-33 146.7 135 51.9
DCAR_019962 Daucus carota HOM05D004783 ORTHO05D005581 7.9e-33 145.6 148 49.3
FAN09G0480 Fragaria x ananassa HOM05D004783 ORTHO05D005581 7.9e-33 145.6 133 51.9
COL.COLO4_29903 Corchorus olitorius HOM05D004783 ORTHO05D005581 1.0e-32 145.2 135 54.1
FAN09G4036 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.0e-32 145.2 133 51.9
Ah.16g100720 Amaranthus hybridus HOM05D004783 ORTHO05D005581 1.4e-32 144.8 145 46.9
Ciclev10024609m.g Citrus clementina HOM05D004783 ORTHO05D005581 3.0e-32 143.7 135 48.1
Atru.BG.182.p Acer truncatum HOM05D004783 ORTHO05D005581 3.9e-32 143.3 135 49.6
CsaV3_2G007350 Cucumis sativus L. HOM05D004783 ORTHO05D005581 8.8e-32 142.1 132 52.3
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 2.0e-31 141.0 145 45.5
TWI79G0945 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 2.6e-31 140.6 133 51.9
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 8.2e-30 135.6 139 46.8
Manes.02G133800 Manihot esculenta HOM05D004783 ORTHO05D005581 8.2e-30 135.6 138 50.0
LjContig00564g0007311 Lotus japonicus HOM05D004783 ORTHO05D005581 1.8e-29 134.4 136 47.1
Glyma.02G276200 Glycine max HOM05D004783 ORTHO05D005581 2.4e-29 134.0 136 44.9
FAN25G1477 Fragaria x ananassa HOM05D004783 ORTHO05D005581 4.1e-29 133.3 116 53.4
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 4.1e-29 133.3 135 48.1
MBI04_g31976_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 4.1e-29 133.3 135 48.1
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 5.3e-29 132.9 114 56.1
Ca_06171_v3 Cicer arietinum L. HOM05D004783 ORTHO05D005581 6.9e-29 132.5 142 45.1
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 6.9e-29 132.5 136 45.6
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 6.9e-29 132.5 154 44.2
Aa31LG4G9300 Aethionema arabicum HOM05D004783 ORTHO05D005581 9.1e-29 132.1 136 50.0
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 1.2e-28 131.7 139 47.5
AUR62009429 Chenopodium quinoa HOM05D004783 ORTHO05D005581 1.5e-28 131.3 135 45.2
CDE02G3572 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 2.6e-28 130.6 134 47.8
PGR119G2361 Punica granatum HOM05D004783 ORTHO05D005581 3.4e-28 130.2 136 45.6
FAN11G1373 Fragaria x ananassa HOM05D004783 ORTHO05D005581 7.7e-28 129.0 115 52.2
FAN15G2228 Fragaria x ananassa HOM05D004783 ORTHO05D005581 7.7e-28 129.0 115 52.2
SHI25070 Sapria himalayana HOM05D004783 ORTHO05D005581 7.7e-28 129.0 135 45.9
CDE09G0275 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 1.0e-27 128.6 134 47.0
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 1.0e-27 128.6 142 44.4
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 1.7e-27 127.9 136 44.1
Medtr5g088490 Medicago truncatula HOM05D004783 ORTHO05D005581 2.2e-27 127.5 136 45.6
Thhalv10018115m.g Eutrema salsugineum HOM05D004783 ORTHO05D005581 6.5e-27 125.9 136 47.8
Lj4g0006774 Lotus japonicus HOM05D004783 ORTHO05D005581 1.1e-26 125.2 136 44.1
AL2G30824 Arabidopsis lyrata HOM05D004783 ORTHO05D005581 1.4e-26 124.8 136 47.1
AT1G71210 Arabidopsis thaliana HOM05D004783 ORTHO05D005581 1.4e-26 124.8 136 47.1
CARHR064510 Cardamine hirsuta HOM05D004783 ORTHO05D005581 1.6e-25 121.3 136 46.3
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 2.1e-25 120.9 183 39.3
Potri.004G229100 Populus trichocarpa HOM05D004783 ORTHO05D005581 4.7e-25 119.8 138 47.8
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 4.7e-25 119.8 134 44.0
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 6.1e-25 119.4 136 42.6
BcaB03g14878 Brassica carinata HOM05D004783 ORTHO05D005581 1.4e-24 118.2 137 45.3
Carub.0002s1809 Capsella rubella HOM05D004783 ORTHO05D005581 1.4e-24 118.2 136 45.6
Sp5g26370 Schrenkiella parvula HOM05D004783 ORTHO05D005581 1.8e-24 117.9 136 45.6
A07p37560 Brassica napus HOM05D004783 ORTHO05D005581 2.3e-24 117.5 136 46.3
BraA07t31317Z Brassica rapa HOM05D004783 ORTHO05D005581 2.3e-24 117.5 136 46.3
C06p45300 Brassica napus HOM05D004783 ORTHO05D005581 8.8e-24 115.5 136 45.6
BolC6t39586H Brassica oleracea HOM05D004783 ORTHO05D005581 8.8e-24 115.5 136 45.6
Sabra01G0174200 Salix brachista HOM05D004783 ORTHO05D005581 2.0e-23 114.4 138 45.7
Psat0ss7919g0040 Pisum sativum HOM05D004783 ORTHO05D005581 1.3e-19 101.7 147 40.1
SEGI_13595 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 3.8e-19 100.1 150 34.7
THA.LOC104800219 Tarenaya hassleriana HOM05D004783 ORTHO05D005581 2.5e-18 97.4 135 39.3
ATR0697G207 Amborella trichopoda HOM05D004783 ORTHO05D005581 3.6e-17 93.6 88 47.7
COL.COLO4_04586 Corchorus olitorius HOM05D004783 ORTHO05D005581 2.3e-16 90.9 144 38.2
CDE12G0310 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 8.8e-16 89.0 108 43.5
arahy.Tifrunner.gnm1.ann1.U93Q4L Arachis hypogaea HOM05D004783 ORTHO05D005581 1.2e-15 88.6 83 51.8
Ah.05g173850 Amaranthus hybridus HOM05D004783 ORTHO05D005581 5.7e-15 86.3 92 45.7
SEGI_02727 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 8.2e-14 82.4 133 35.3
arahy.Tifrunner.gnm1.ann1.7R7ZTH Arachis hypogaea HOM05D004783 ORTHO05D005581 4.1e-13 80.1 84 47.6
Gohir.D03G072203 Gossypium hirsutum HOM05D004783 ORTHO05D005581 5.9e-12 76.3 69 53.6
Os02g0127600 Oryza sativa ssp. japonica HOM05D004783 ORTHO05D005581 1.3e-11 75.1 149 30.9
Zm00001eb231010 Zea mays HOM05D004783 ORTHO05D005581 2.2e-11 74.3 124 31.5
Migut.M00241 Erythranthe guttata HOM05D000213 ORTHO05D000426 5.0e-11 73.2 75 60.0
Potri.003G000601 Populus trichocarpa HOM05D004783 ORTHO05D005581 5.0e-11 73.2 121 38.8
HPP92_028041 Vanilla planifolia HOM05D004783 ORTHO05D005581 5.0e-11 73.2 93 41.9
Manes.01G175200 Manihot esculenta HOM05D004783 ORTHO05D005581 4.2e-10 70.1 68 50.0
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 4.2e-10 70.1 73 43.8
CDE01G0049 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 9.4e-10 68.9 109 35.8
arahy.Tifrunner.gnm1.ann1.I0AKGU Arachis hypogaea HOM05D004783 ORTHO05D005581 1.2e-09 68.6 69 47.8
arahy.Tifrunner.gnm1.ann1.Z9P42K Arachis hypogaea HOM05D004783 ORTHO05D005581 1.6e-09 68.2 70 47.1
SGA_v2.0_scaffold336G49158 Striga asiatica HOM05D000451 ORTHO05D000022 2.1e-09 67.8 83 41.0
arahy.Tifrunner.gnm1.ann1.EB1NGP Arachis hypogaea HOM05D004783 ORTHO05D005581 8.0e-09 65.9 70 45.7
MSTRG.15082 Avicennia marina HOM05D000213 ORTHO05D000426 1.8e-08 64.7 84 51.2
Lalb_Chr19g0125351 Lupinus albus HOM05D002986 ORTHO05D003966 4.0e-08 63.5 160 28.1
Sabra01G0106600 Salix brachista HOM05D000003 ORTHO05D000022 6.8e-08 62.8 70 41.4
Oeu030084.1 Olea europaea HOM05D000213 ORTHO05D000426 8.8e-08 62.4 51 72.5
Sabra09G0061300 Salix brachista HOM05D000003 ORTHO05D000022 3.4e-07 60.5 70 40.0
BolC6t39583H Brassica oleracea HOM05D004783 ORTHO05D005581 5.7e-07 59.7 68 44.1
Peaxi162Scf00469g00624 Petunia axillaris HOM05D000213 ORTHO05D000426 1.3e-06 58.5 52 65.4
Nitab4.5_0000628g0140 Nicotiana tabacum HOM05D000213 ORTHO05D000426 1.7e-06 58.2 52 65.4
Dinv24705 Davidia involucrata HOM05D000213 ORTHO05D000426 3.7e-06 57.0 52 67.3
CAN.G986.34 Capsicum annuum HOM05D004783 ORTHO05D005581 6.3e-06 56.2 40 57.5
Gohir.A03G129100 Gossypium hirsutum HOM05D000424 ORTHO05D008586 6.3e-06 56.2 156 24.4


User provided reference genes

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