Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G04846 Striga asiatica HOM05D001081 ORTHO05D004708 1.3e-128 463.0 224 100.0
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 5.9e-97 357.8 198 90.4
SalBow4G1120 Salvia bowleyana HOM05D001081 ORTHO05D004708 1.9e-74 283.1 202 71.3
Cfa016233 Carpinus fangiana HOM05D001081 ORTHO05D004708 3.2e-66 255.8 200 65.0
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 7.1e-66 254.6 199 65.3
Hma1.2p1_0404F.1_g145340 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 9.2e-66 254.2 198 66.2
TAR375G0280 Trochodendron aralioides HOM05D001081 ORTHO05D004708 2.7e-65 252.7 186 68.3
Dinv35339 Davidia involucrata HOM05D001081 ORTHO05D004708 1.0e-64 250.8 199 63.8
CiPaw.06G046000 Carya illinoinensis HOM05D001081 ORTHO05D004708 3.9e-64 248.8 190 66.8
Lj1C1020T7 Lonicera japonica HOM05D001081 ORTHO05D004708 1.9e-63 246.5 200 63.5
Sabra15G0067900 Salix brachista HOM05D001081 ORTHO05D004708 5.6e-63 245.0 201 64.2
vmacro22638 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 7.3e-63 244.6 199 62.8
QL09p008772 Quercus lobata HOM05D001081 ORTHO05D004708 1.2e-62 243.8 200 63.0
Nn1g00260 Nelumbo nucifera HOM05D001081 ORTHO05D004708 1.6e-62 243.4 189 65.1
Manes.01G183500 Manihot esculenta HOM05D001081 ORTHO05D004708 2.1e-62 243.0 202 61.9
Ciclev10018477m.g Citrus clementina HOM05D001081 ORTHO05D004708 6.2e-62 241.5 200 62.0
vmacro06386 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 6.2e-62 241.5 199 62.3
Prupe.2G309600 Prunus persica HOM05D001081 ORTHO05D004708 1.4e-61 240.4 204 62.3
Sabra15G0068100 Salix brachista HOM05D001081 ORTHO05D004708 1.4e-61 240.4 201 63.7
EL10Ac3g05278 Beta vulgaris HOM05D001081 ORTHO05D004708 8.9e-61 237.7 211 58.8
CSS0032097 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D004708 1.2e-60 237.3 199 63.3
Atru.chr12.2203 Acer truncatum HOM05D001081 ORTHO05D004708 1.5e-60 236.9 201 62.2
RcHm_v2.0_Chr1g0380531 Rosa chinensis HOM05D001081 ORTHO05D004708 2.6e-60 236.1 200 62.0
RcHm_v2.0_Chr1g0381531 Rosa chinensis HOM05D001081 ORTHO05D004708 7.6e-60 234.6 200 61.5
Lj4g0008522 Lotus japonicus HOM05D001081 ORTHO05D004708 1.7e-59 233.4 200 62.5
Glyma.17G128700 Glycine max HOM05D001081 ORTHO05D004708 2.2e-59 233.0 200 62.5
BcaNung01219 Brassica carinata HOM05D001081 ORTHO05D004708 2.9e-59 232.6 198 61.6
C07p43490 Brassica napus HOM05D001081 ORTHO05D004708 2.9e-59 232.6 198 61.6
BolC7t44875H Brassica oleracea HOM05D001081 ORTHO05D004708 2.9e-59 232.6 198 61.6
BraA06t26428Z Brassica rapa HOM05D001081 ORTHO05D004708 2.9e-59 232.6 198 62.1
MD07G1288100 Malus domestica HOM05D001081 ORTHO05D004708 3.7e-59 232.3 201 61.2
Sopen03g022900 Solanum pennellii HOM05D001081 ORTHO05D004708 3.7e-59 232.3 195 61.0
THA.LOC104798901 Tarenaya hassleriana HOM05D001081 ORTHO05D004708 3.7e-59 232.3 198 61.1
MBI06_g13415_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D004708 6.4e-59 231.5 184 65.2
Lsat_1_v5_gn_8_5261 Lactuca sativa HOM05D001081 ORTHO05D004708 1.9e-58 229.9 198 60.1
PSO063G4550 Papaver somniferum HOM05D001081 ORTHO05D004708 1.9e-58 229.9 200 61.0
CARHR189220 Cardamine hirsuta HOM05D001081 ORTHO05D004708 2.4e-58 229.6 198 61.1
AUR62006087 Chenopodium quinoa HOM05D001081 ORTHO05D004708 2.4e-58 229.6 196 60.2
FvH4_7g31550 Fragaria vesca HOM05D001081 ORTHO05D004708 3.2e-58 229.2 200 61.5
CANSAT21G1825 Cannabis sativa HOM05D001081 ORTHO05D004708 4.1e-58 228.8 200 59.0
CANSAT21G0069 Cannabis sativa HOM05D001081 ORTHO05D004708 5.4e-58 228.4 200 60.5
CANSAT21G2573 Cannabis sativa HOM05D001081 ORTHO05D004708 5.4e-58 228.4 200 60.5
AUR62019407 Chenopodium quinoa HOM05D001081 ORTHO05D004708 7.1e-58 228.0 196 60.7
FAN01G0187 Fragaria x ananassa HOM05D001081 ORTHO05D004708 7.1e-58 228.0 187 63.6
AT5G24280 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 9.2e-58 227.6 198 60.6
Nitab4.5_0000548g0110 Nicotiana tabacum HOM05D001081 ORTHO05D004708 1.6e-57 226.9 184 63.0
Thhalv10003512m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 2.7e-57 226.1 201 59.7
HanXRQChr08g0225341 Helianthus annuus HOM05D001081 ORTHO05D004708 2.7e-57 226.1 185 63.8
Lalb_Chr10g0091361 Lupinus albus HOM05D001081 ORTHO05D004708 2.7e-57 226.1 186 62.9
Thecc.03G199500 Theobroma cacao HOM05D001081 ORTHO05D004708 2.7e-57 226.1 200 60.5
C07p43530 Brassica napus HOM05D001081 ORTHO05D004708 3.5e-57 225.7 200 58.5
BolC7t44880H Brassica oleracea HOM05D001081 ORTHO05D004708 3.5e-57 225.7 200 58.5
Eucgr.G00143 Eucalyptus grandis HOM05D001081 ORTHO05D004708 3.5e-57 225.7 200 58.5
Thhalv10003513m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 6.0e-57 224.9 202 58.9
AL6G35710 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 7.8e-57 224.6 198 59.1
FAN06G1778 Fragaria x ananassa HOM05D001081 ORTHO05D004708 7.8e-57 224.6 184 64.1
FAN06G3553 Fragaria x ananassa HOM05D001081 ORTHO05D004708 7.8e-57 224.6 184 64.1
Carub.0006s2205 Capsella rubella HOM05D001081 ORTHO05D004708 1.0e-56 224.2 198 59.1
Aqoxy3G00072 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 1.7e-56 223.4 197 60.9
Actinidia08651 Actinidia chinensis HOM05D001081 ORTHO05D004708 2.3e-56 223.0 257 49.8
A06p35020 Brassica napus HOM05D001081 ORTHO05D004708 5.1e-56 221.9 200 58.0
A06p35070 Brassica napus HOM05D001081 ORTHO05D004708 3.3e-55 219.2 223 55.2
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 4.3e-55 218.8 215 54.4
Eucgr.H05016 Eucalyptus grandis HOM05D001081 ORTHO05D004708 5.6e-55 218.4 184 60.9
Eucgr.G00111 Eucalyptus grandis HOM05D001081 ORTHO05D004708 9.6e-55 217.6 184 60.3
Ca_12791_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 1.2e-54 217.2 200 58.0
Medtr1g008050 Medicago truncatula HOM05D001081 ORTHO05D004708 2.1e-54 216.5 200 57.5
Aa31LG11G3510 Aethionema arabicum HOM05D001081 ORTHO05D004708 3.6e-54 215.7 198 57.1
BraA06t26425Z Brassica rapa HOM05D001081 ORTHO05D004708 4.7e-54 215.3 184 59.8
Migut.F00209 Erythranthe guttata HOM05D001081 ORTHO05D004708 8.1e-54 214.5 136 79.4
Gohir.A11G015200 Gossypium hirsutum HOM05D001081 ORTHO05D004708 8.1e-54 214.5 200 58.5
PSO781G0289 Papaver somniferum HOM05D001081 ORTHO05D004708 1.4e-53 213.8 200 56.5
ATR0602G075 Amborella trichopoda HOM05D001081 ORTHO05D004708 2.4e-53 213.0 200 57.5
Gohir.D11G015300 Gossypium hirsutum HOM05D001081 ORTHO05D004708 2.4e-53 213.0 200 58.5
Gorai.007G015700 Gossypium raimondii HOM05D001081 ORTHO05D004708 2.4e-53 213.0 200 58.5
HanXRQChr10g0291811 Helianthus annuus HOM05D001081 ORTHO05D004708 3.1e-53 212.6 183 61.2
Psat6g034720 Pisum sativum HOM05D001081 ORTHO05D004708 3.1e-53 212.6 200 57.5
Eucgr.G00092 Eucalyptus grandis HOM05D001081 ORTHO05D004708 4.0e-53 212.2 184 59.8
BcaNung01806 Brassica carinata HOM05D001081 ORTHO05D004708 5.2e-53 211.8 206 57.3
Lj1C1018T17 Lonicera japonica HOM05D001081 ORTHO05D004708 1.2e-52 210.7 199 57.3
Rhsim03G0209100 Rhododendron simsii HOM05D001081 ORTHO05D004708 3.4e-52 209.1 200 58.5
GSVIVG01038555001 Vitis vinifera HOM05D001081 ORTHO05D004708 1.3e-51 207.2 305 42.3
Medtr1g007950 Medicago truncatula HOM05D001081 ORTHO05D004708 2.9e-51 206.1 200 57.0
TPR.G12082 Trifolium pratense HOM05D001081 ORTHO05D004708 6.4e-51 204.9 200 54.5
Cpa.g.sc3.91 Carica papaya HOM05D001081 ORTHO05D004708 2.4e-50 203.0 226 53.5
HanXRQChr08g0225301 Helianthus annuus HOM05D001081 ORTHO05D004708 4.6e-49 198.7 198 54.5
HanXRQChr08g0225291 Helianthus annuus HOM05D001081 ORTHO05D004708 3.3e-47 192.6 184 58.7
CARHR189240 Cardamine hirsuta HOM05D001081 ORTHO05D004708 4.8e-46 188.7 189 54.0
Hund21007 Selenicereus undatus HOM05D001081 ORTHO05D004708 8.1e-46 188.0 189 55.6
Carub.0006s2203 Capsella rubella HOM05D001081 ORTHO05D004708 7.6e-44 181.4 156 60.9
Cc02_g01510 Coffea canephora HOM05D001081 ORTHO05D004708 7.4e-39 164.9 301 35.9
SMO213G0001 Selaginella moellendorffii HOM05D001081 ORTHO05D004708 8.1e-38 161.4 212 41.5
TWI39G0245 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 1.2e-36 157.5 124 66.1
CARHR189250 Cardamine hirsuta HOM05D001081 ORTHO05D004708 3.8e-35 152.5 151 56.3
Hma1.2p1_0404F.1_g145380 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 8.4e-35 151.4 110 69.1
Mapoly0076s0015 Marchantia polymorpha HOM05D001081 ORTHO05D004708 1.4e-34 150.6 190 43.2
Mapoly0111s0028 Marchantia polymorpha HOM05D001081 ORTHO05D004708 1.3e-32 144.1 213 39.0
DCAR_008928 Daucus carota HOM05D001081 ORTHO05D004708 3.0e-32 142.9 199 45.7
AagrBONN_evm.TU.Sc2ySwM_117.3719 Anthoceros agrestis HOM05D001081 ORTHO05D004708 4.8e-30 135.6 211 38.9
AagrBONN_evm.TU.Sc2ySwM_228.1615 Anthoceros agrestis HOM05D001081 ORTHO05D004708 1.4e-29 134.0 209 37.3
Gohir.D11G256700 Gossypium hirsutum HOM05D001081 ORTHO05D010708 1.4e-26 124.0 121 56.2
Gorai.010G233200 Gossypium raimondii HOM05D001081 ORTHO05D010708 4.2e-26 122.5 121 55.4
CAN.G481.14 Capsicum annuum HOM05D001081 ORTHO05D004708 3.0e-24 116.3 101 61.4
Nitab4.5_0006933g0040 Nicotiana tabacum HOM05D001081 ORTHO05D004708 8.7e-24 114.8 103 56.3
AL6G35700 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 6.3e-22 108.6 110 56.4
Actinidia04725 Actinidia chinensis HOM05D001081 ORTHO05D004708 2.0e-20 103.6 104 51.9
Potri.012G016100 Populus trichocarpa HOM05D001081 ORTHO05D004708 7.6e-20 101.7 81 65.4
PSO170G6091 Papaver somniferum HOM05D001081 ORTHO05D004708 1.3e-19 100.9 91 58.2
Actinidia27675 Actinidia chinensis HOM05D001081 ORTHO05D004708 8.5e-19 98.2 73 65.8
Gorai.011G131700 Gossypium raimondii HOM05D001081 ORTHO05D004708 3.0e-16 89.7 87 54.0
Actinidia04689 Actinidia chinensis HOM05D001081 ORTHO05D004708 1.9e-15 87.0 62 66.1
COL.COLO4_16768 Corchorus olitorius HOM05D001081 ORTHO05D004708 1.3e-14 84.3 86 51.2
Peaxi162Scf00740g00140 Petunia axillaris HOM05D001081 ORTHO05D024756 4.8e-14 82.4 57 68.4
FvH4_7g31511 Fragaria vesca HOM05D001081 ORTHO05D004708 6.3e-14 82.0 72 59.7
Aqoxy4G01594 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 1.3e-11 74.3 49 69.4
Pp3c22_17807 Physcomitrium patens HOM05D001081 ORTHO05D004708 2.2e-11 73.6 112 37.5
Hma1.2p1_0013F.1_g008960 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 3.8e-11 72.8 43 76.7
Migut.F00208 Erythranthe guttata HOM05D001081 ORTHO05D004708 6.5e-11 72.0 43 79.1
Lsat_1_v5_gn_9_3381 Lactuca sativa HOM05D001081 ORTHO05D004708 3.2e-10 69.7 80 47.5
TWI39G0445 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 4.2e-10 69.3 71 56.3
AUR62000987 Chenopodium quinoa HOM05D001081 ORTHO05D004708 2.1e-09 67.0 44 75.0
Solyc03g083120.3 Solanum lycopersicum HOM05D001081 ORTHO05D024756 6.1e-09 65.5 39 79.5
Pp3c8_21182 Physcomitrium patens HOM05D001081 ORTHO05D004708 1.8e-08 63.9 198 30.8
Sopen03g019380 Solanum pennellii HOM05D001081 ORTHO05D029255 3.0e-08 63.2 106 36.8
Carub.0006s2204 Capsella rubella HOM05D001081 ORTHO05D024756 1.5e-07 60.8 49 61.2
SEGI_15117 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 4.4e-07 59.3 49 55.1
Dinv08524 Davidia involucrata HOM05D001081 ORTHO05D004708 4.8e-06 55.8 67 44.8
Lsat_1_v5_gn_6_63561 Lactuca sativa HOM05D001081 ORTHO05D004708 4.8e-06 55.8 43 67.4


User provided reference genes

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