Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 7.5e-52 206.8 100 100.0
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 2.4e-18 95.5 56 76.8
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 5.1e-16 87.8 54 70.4
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 9.6e-15 83.6 70 54.3
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 2.8e-14 82.0 56 66.1
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 2.8e-14 82.0 56 64.3
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 6.2e-14 80.9 61 57.4
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 6.2e-14 80.9 66 57.6
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 1.4e-13 79.7 70 55.7
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 1.8e-13 79.3 56 62.5
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 1.8e-13 79.3 56 62.5
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 2.4e-13 79.0 76 52.6
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 4.0e-13 78.2 56 60.7
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 5.3e-13 77.8 75 50.7
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 5.3e-13 77.8 70 54.3
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 5.3e-13 77.8 60 61.7
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 6.9e-13 77.4 56 58.9
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 9.0e-13 77.0 54 64.8
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 1.2e-12 76.6 56 57.1
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 1.5e-12 76.3 56 57.1
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 2.0e-12 75.9 54 64.8
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 2.0e-12 75.9 60 58.3
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 2.0e-12 75.9 54 64.8
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 2.6e-12 75.5 60 58.3
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 3.4e-12 75.1 56 60.7
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 3.4e-12 75.1 60 56.7
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 4.5e-12 74.7 66 51.5
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 4.5e-12 74.7 60 56.7
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 5.8e-12 74.3 60 56.7
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 5.8e-12 74.3 67 49.3
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 5.8e-12 74.3 56 58.9
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 7.6e-12 73.9 51 60.8
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 7.6e-12 73.9 54 61.1
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 1.0e-11 73.6 56 58.9
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.0e-11 73.6 54 59.3
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 1.0e-11 73.6 60 55.0
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 1.3e-11 73.2 56 55.4
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 1.3e-11 73.2 60 56.7
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 1.7e-11 72.8 60 55.0
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 1.7e-11 72.8 51 62.7
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 1.7e-11 72.8 56 57.1
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 2.2e-11 72.4 51 62.7
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 2.2e-11 72.4 67 49.3
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 2.9e-11 72.0 49 65.3
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 2.9e-11 72.0 56 53.6
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 2.9e-11 72.0 60 55.0
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 2.9e-11 72.0 51 62.7
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 4.9e-11 71.2 56 55.4
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 4.9e-11 71.2 70 50.0
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 4.9e-11 71.2 52 57.7
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 6.5e-11 70.9 56 57.1
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 6.5e-11 70.9 54 59.3
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 6.5e-11 70.9 54 61.1
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 6.5e-11 70.9 48 66.7
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 1.1e-10 70.1 54 57.4
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 1.1e-10 70.1 56 55.4
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 1.1e-10 70.1 56 55.4
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 1.1e-10 70.1 56 55.4
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 1.1e-10 70.1 56 55.4
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 1.1e-10 70.1 56 55.4
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 1.1e-10 70.1 56 51.8
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 1.1e-10 70.1 54 57.4
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 1.4e-10 69.7 54 53.7
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 1.4e-10 69.7 56 51.8
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.4e-10 69.7 51 60.8
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.5e-10 68.9 51 56.9
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 2.5e-10 68.9 48 64.6
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 2.5e-10 68.9 56 55.4
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 2.5e-10 68.9 51 58.8
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 3.2e-10 68.6 56 53.6
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 3.2e-10 68.6 56 53.6
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 3.2e-10 68.6 56 53.6
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 3.2e-10 68.6 56 53.6
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 3.2e-10 68.6 56 53.6
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 3.2e-10 68.6 54 57.4
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 4.2e-10 68.2 54 53.7
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 5.5e-10 67.8 64 50.0
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 5.5e-10 67.8 64 50.0
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 5.5e-10 67.8 64 50.0
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 5.5e-10 67.8 64 50.0
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 5.5e-10 67.8 67 43.3
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 5.5e-10 67.8 55 58.2
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 5.5e-10 67.8 48 62.5
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 7.1e-10 67.4 51 54.9
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 1.2e-09 66.6 51 54.9
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 1.2e-09 66.6 54 51.9
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.6e-09 66.2 64 48.4
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 4.6e-09 64.7 56 50.0
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 4.6e-09 64.7 54 53.7
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 4.6e-09 64.7 48 58.3
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 7.9e-09 63.9 70 44.3
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 7.9e-09 63.9 48 58.3
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 7.9e-09 63.9 49 57.1
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.0e-08 63.5 51 52.9
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 1.3e-08 63.2 54 48.1
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.8e-08 62.8 49 55.1
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.8e-08 62.8 49 55.1
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.8e-08 62.8 49 55.1
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.8e-08 62.8 49 55.1
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 3.0e-08 62.0 54 53.7
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.9e-07 59.3 49 51.0
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 2.5e-07 58.9 48 52.1
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 2.5e-07 58.9 54 51.9
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 4.3e-07 58.2 49 51.0
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 2.8e-06 55.5 55 50.9
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 3.7e-06 55.1 52 44.2
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 6.2e-06 54.3 54 46.3


User provided reference genes

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