Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 1.2e-189 666.4 341 100.0
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 1.4e-145 520.0 351 76.1
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 1.8e-129 466.5 340 68.8
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 4.1e-126 455.3 343 68.5
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 3.9e-124 448.7 335 68.4
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 1.5e-123 446.8 335 68.1
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 2.8e-122 442.6 344 68.0
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 6.2e-122 441.4 342 65.5
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 1.1e-121 440.7 337 65.6
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 5.2e-121 438.3 354 65.3
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 5.2e-121 438.3 371 62.3
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 9.9e-120 434.1 336 67.3
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 1.3e-119 433.7 341 67.2
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 1.3e-119 433.7 336 66.4
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 3.8e-119 432.2 336 66.7
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.9e-119 431.8 335 65.7
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 1.1e-118 430.6 335 64.8
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 1.4e-118 430.3 345 64.1
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.9e-118 429.9 333 66.7
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 5.4e-118 428.3 333 66.4
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 7.1e-118 427.9 343 63.8
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 1.2e-117 427.2 335 66.3
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 4.6e-117 425.2 338 65.7
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 1.0e-116 424.1 337 65.6
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 1.3e-116 423.7 337 65.0
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 1.7e-116 423.3 344 64.0
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 2.3e-116 422.9 330 66.1
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 2.3e-116 422.9 337 65.0
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 3.0e-116 422.5 330 65.8
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 3.9e-116 422.2 344 63.7
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 5.1e-116 421.8 336 64.0
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 1.1e-115 420.6 327 66.4
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 1.1e-115 420.6 344 63.1
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 1.9e-115 419.9 330 67.9
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 1.9e-115 419.9 333 64.3
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 4.3e-115 418.7 342 63.5
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 7.3e-115 417.9 330 65.5
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 7.3e-115 417.9 330 65.5
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 9.6e-115 417.5 336 64.0
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 1.3e-114 417.2 332 65.7
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 2.1e-114 416.4 330 66.1
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 3.6e-114 415.6 348 63.2
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 3.6e-114 415.6 346 63.0
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 1.1e-113 414.1 332 65.4
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 1.4e-113 413.7 333 62.8
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 1.8e-113 413.3 340 64.7
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 2.4e-113 412.9 333 63.1
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 2.4e-113 412.9 338 64.5
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 3.1e-113 412.5 344 63.4
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 3.1e-113 412.5 329 65.7
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 4.0e-113 412.1 338 64.5
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 4.0e-113 412.1 343 62.4
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 6.9e-113 411.4 342 62.0
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 9.0e-113 411.0 336 65.2
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.2e-112 410.6 343 62.7
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 2.6e-112 409.5 326 64.7
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 7.6e-112 407.9 306 66.7
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 2.9e-111 406.0 337 61.7
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 2.9e-111 406.0 331 64.7
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 4.9e-111 405.2 349 62.2
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 9.3e-110 401.0 376 59.0
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.6e-109 400.2 368 59.5
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 3.5e-109 399.1 339 62.2
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 3.0e-108 396.0 346 61.8
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 6.6e-108 394.8 335 63.0
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.5e-107 393.7 324 62.0
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 4.3e-107 392.1 351 61.5
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 9.6e-107 391.0 333 60.7
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 9.6e-107 391.0 335 62.7
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 9.6e-107 391.0 346 61.0
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 9.6e-107 391.0 346 61.6
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 2.8e-106 389.4 299 65.2
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 8.1e-106 387.9 340 61.2
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 1.4e-105 387.1 344 57.6
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 1.4e-105 387.1 344 57.6
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 4.5e-104 382.1 362 58.0
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 5.8e-104 381.7 317 63.7
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 2.9e-103 379.4 343 59.5
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.4e-102 376.3 338 60.7
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 1.9e-99 366.7 312 60.9
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.5e-99 366.3 306 63.1
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 5.6e-99 365.2 338 59.8
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 3.4e-96 355.9 350 55.7
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 8.4e-95 351.3 233 76.8
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 8.4e-95 351.3 325 56.9
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 9.3e-94 347.8 337 59.3
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 4.3e-91 339.0 265 64.5
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 3.1e-89 332.8 280 65.0
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 5.0e-87 325.5 277 62.5
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 5.0e-87 325.5 334 56.9
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 1.2e-85 320.9 334 54.2
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 5.7e-83 312.0 412 46.6
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 1.1e-81 307.8 263 60.8
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 9.0e-81 304.7 394 47.2
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.6e-80 303.1 338 53.6
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 1.7e-79 300.4 230 67.4
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 3.8e-79 299.3 244 66.8
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 7.2e-78 295.0 281 58.7
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 4.6e-77 292.4 235 65.1
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 1.2e-72 277.7 334 48.5
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 1.7e-71 273.9 328 47.9
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 8.2e-66 255.0 179 70.4
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 5.3e-65 252.3 335 45.1
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 2.2e-58 230.3 278 47.1
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 2.7e-56 223.4 186 62.4
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 5.9e-56 222.2 268 47.0
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 7.7e-56 221.9 342 40.1
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 2.8e-50 203.4 189 60.3
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 3.2e-46 189.9 232 48.7
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 3.3e-38 163.3 100 79.0
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 1.5e-27 127.9 90 67.8
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 5.4e-25 119.4 73 74.0
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 9.2e-25 118.6 287 31.7
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 1.3e-23 114.8 111 52.3
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 6.6e-23 112.5 85 65.9
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 9.5e-22 108.6 85 64.7
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 7.5e-19 99.0 268 30.2
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.2e-16 91.7 58 74.1
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 3.6e-13 80.1 77 55.8
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 6.2e-13 79.3 54 70.4
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 6.2e-13 79.3 54 70.4
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 1.3e-10 71.6 185 29.7
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 5.6e-06 56.2 39 69.2


User provided reference genes

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