Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1692.9 843 100.0
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1480.7 845 86.3
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1464.1 845 85.7
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1453.3 845 85.0
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1388.2 843 81.5
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1384.4 845 81.3
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1382.5 874 79.1
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1372.5 851 80.6
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1368.6 845 79.1
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1367.4 843 79.6
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1365.5 843 79.6
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1365.1 845 80.7
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1362.8 845 79.8
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1355.5 845 79.1
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1354.0 844 79.1
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1348.2 843 78.8
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1343.6 845 78.6
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1339.7 845 78.7
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1339.3 838 79.6
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1338.2 834 79.3
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1337.8 845 78.5
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1335.9 845 78.5
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1333.9 845 78.0
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1332.8 845 78.2
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1331.2 845 78.2
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1328.9 845 78.0
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 915 74.5
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1324.3 858 76.9
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 875 76.8
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 845 77.8
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 845 77.3
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 845 77.3
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 847 78.2
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1320.8 843 77.8
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1318.9 845 78.0
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1318.9 845 77.8
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 865 77.1
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1311.6 847 77.4
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1311.2 844 77.6
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1311.2 848 76.9
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1308.1 845 77.3
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1308.1 845 77.3
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1306.2 871 75.8
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1306.2 845 77.5
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1302.3 918 72.0
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1301.6 845 76.8
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1298.9 845 75.4
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1297.0 846 76.7
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1296.6 847 76.9
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1296.2 846 76.4
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1294.6 974 69.2
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1294.3 846 76.5
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1293.9 845 76.4
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1292.7 845 76.4
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1292.7 846 77.1
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1292.3 845 76.1
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1290.4 846 76.7
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1290.4 846 76.8
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1290.0 845 76.2
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1288.5 845 76.2
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1288.5 845 76.0
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1285.8 834 76.4
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1285.4 852 76.2
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1284.2 846 76.1
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1283.9 845 74.9
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1283.1 845 75.6
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1283.1 850 75.2
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1281.9 852 75.9
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1280.0 852 75.8
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1280.0 845 75.9
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1279.2 845 75.3
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1277.7 846 76.8
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1276.5 845 76.0
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1263.4 911 71.2
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1263.1 844 74.8
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1263.1 845 74.3
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1258.8 845 75.5
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1250.3 847 73.8
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1249.6 918 70.4
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1246.5 788 77.4
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1241.5 771 77.7
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1241.1 855 73.6
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1228.0 772 78.1
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1216.4 825 74.9
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1212.6 849 72.8
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1200.3 831 73.9
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1193.3 758 78.2
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1189.1 866 68.7
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1183.7 849 72.0
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1183.7 782 75.7
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1180.6 772 76.4
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1177.5 845 71.0
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1177.5 846 69.6
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1167.9 843 71.3
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1146.0 801 71.5
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1140.9 846 70.1
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1139.4 851 67.3
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1134.0 839 67.5
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1124.8 755 72.8
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1098.6 862 65.2
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1084.3 701 77.0
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1076.6 846 65.7
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 0.0e+00 1075.8 659 80.6
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 5.8e-312 1073.5 857 64.2
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.2e-311 1073.2 848 64.4
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 1.6e-304 1049.3 704 74.6
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 1.8e-287 992.6 850 64.0
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.5e-238 830.1 646 67.0
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 1.6e-232 810.1 542 72.1
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.3e-229 800.4 513 76.0
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 9.7e-201 704.5 425 81.9
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 7.5e-153 545.4 336 81.0
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 2.8e-115 420.6 307 73.6
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 4.6e-110 403.3 261 78.5
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.8e-109 401.4 307 63.8
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 2.1e-107 394.4 285 69.1
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 2.0e-92 344.7 193 85.5
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 8.2e-91 339.3 263 66.2
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.7e-83 315.1 395 47.3
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 6.3e-67 260.0 182 72.5
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 3.5e-65 254.2 282 52.1
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 1.9e-55 221.9 117 98.3
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 8.3e-51 206.5 146 74.0
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 6.6e-48 196.8 140 67.9
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 2.7e-33 148.3 88 80.7
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 2.3e-32 145.2 83 80.7
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 5.6e-31 140.6 103 67.0
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 1.1e-29 136.3 176 46.0
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 4.9e-27 127.5 82 78.0
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.6e-25 122.5 92 65.2
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 5.6e-23 114.0 73 79.5
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 2.8e-22 111.7 84 65.5
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 3.0e-16 91.7 68 67.6
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 5.6e-15 87.4 67 65.7
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 2.9e-11 75.1 105 45.7
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 7.1e-10 70.5 50 68.0
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 1.5e-07 62.8 41 73.2
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.5e-07 62.0 42 76.2


User provided reference genes

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