Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G04755 Striga asiatica HOM05D002032 ORTHO05D405864 7.8e-70 266.9 127 100.0
SGA_v2.0_scaffold48G18026 Striga asiatica HOM05D002032 ORTHO05D002247 6.7e-13 77.8 45 75.6
Duzib264G0180 Durio zibethinus HOM05D002032 ORTHO05D002247 1.5e-12 76.6 45 73.3
FvH4_5g23640 Fragaria vesca HOM05D002032 ORTHO05D002247 1.5e-12 76.6 41 78.0
FAN18G4456 Fragaria x ananassa HOM05D002032 ORTHO05D002247 1.5e-12 76.6 41 78.0
FAN18G4585 Fragaria x ananassa HOM05D002032 ORTHO05D002247 1.5e-12 76.6 41 78.0
Eucgr.B01748 Eucalyptus grandis HOM05D002032 ORTHO05D002247 1.9e-12 76.3 41 78.0
MBI02_g08732_MAGBIO Magnolia biondii HOM05D002032 ORTHO05D002247 1.9e-12 76.3 41 78.0
BcaB08g37132 Brassica carinata HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
BcaC04g19324 Brassica carinata HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
A10p27360 Brassica napus HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
C09p67220 Brassica napus HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
BolC9t59493H Brassica oleracea HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
BraA10t44787Z Brassica rapa HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
Cpa.g.sc230.5 Carica papaya HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
Gohir.A02G143500 Gossypium hirsutum HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
Gohir.D03G037000 Gossypium hirsutum HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
Gorai.003G038800 Gossypium raimondii HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
THA.LOC104799015 Tarenaya hassleriana HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
Thecc.01G102600 Theobroma cacao HOM05D002032 ORTHO05D002247 2.5e-12 75.9 41 78.0
FAN04G3128 Fragaria x ananassa HOM05D002032 ORTHO05D002247 3.3e-12 75.5 41 78.0
ATR0564G187 Amborella trichopoda HOM05D002032 ORTHO05D002247 4.3e-12 75.1 41 75.6
MSTRG.24943 Avicennia marina HOM05D002032 ORTHO05D002247 4.3e-12 75.1 41 78.0
SalBow7G0458 Salvia bowleyana HOM05D002032 ORTHO05D002247 4.3e-12 75.1 41 78.0
CANSAT01G3153 Cannabis sativa HOM05D002032 ORTHO05D002247 5.7e-12 74.7 41 75.6
Duzib147G1617 Durio zibethinus HOM05D002032 ORTHO05D002247 5.7e-12 74.7 41 75.6
RcHm_v2.0_Chr2g0114531 Rosa chinensis HOM05D002032 ORTHO05D002247 5.7e-12 74.7 41 75.6
Actinidia33212 Actinidia chinensis HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Aa31LG3G16940 Aethionema arabicum HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
AL6G20690 Arabidopsis lyrata HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
AT5G10200 Arabidopsis thaliana HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
arahy.Tifrunner.gnm1.ann1.435G7Q Arachis hypogaea HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
arahy.Tifrunner.gnm1.ann1.FTL8EY Arachis hypogaea HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Carub.0006s0866 Capsella rubella HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
CAN.G441.4 Capsicum annuum HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
CARHR203090 Cardamine hirsuta HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Cfa002675 Carpinus fangiana HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
CDE04G2388 Ceratophyllum demersum HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
ClCG01G018820 Citrullus lanatus HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Ciclev10025180m.g Citrus clementina HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Haze_24944 Corylus avellana HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
MELO3C007761.2 Cucumis melo HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
CsaV3_6G045470 Cucumis sativus L. HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
DCAR_011679 Daucus carota HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Dinv16289 Davidia involucrata HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Thhalv10012959m.g Eutrema salsugineum HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
FAN13G1398 Fragaria x ananassa HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Lj4A888T22 Lonicera japonica HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Lalb_Chr13g0295991 Lupinus albus HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
MD01G1028300 Malus domestica HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Manes.12G135800 Manihot esculenta HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Manes.13G075400 Manihot esculenta HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Nn5g30137 Nelumbo nucifera HOM05D002032 ORTHO05D002247 7.4e-12 74.3 40 77.5
Nitab4.5_0000104g0140 Nicotiana tabacum HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Nitab4.5_0007318g0010 Nicotiana tabacum HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Peaxi162Scf00212g01218 Petunia axillaris HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Potri.005G076300 Populus trichocarpa HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Potri.007G092100 Populus trichocarpa HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
PGR004G1459 Punica granatum HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Sabra07G0075600 Salix brachista HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Sp6g33200 Schrenkiella parvula HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Sed0027937 Sechium edule HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Hund00884 Selenicereus undatus HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Solyc04g055110.3 Solanum lycopersicum HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
Sopen04g024970 Solanum pennellii HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
THA.LOC104819301 Tarenaya hassleriana HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
TWI77G0836 Tripterygium wilfordii HOM05D002032 ORTHO05D002247 7.4e-12 74.3 41 75.6
CSS0008079 Camellia sinensis var. sinensis HOM05D002032 ORTHO05D002247 9.7e-12 73.9 41 73.2
FAN08G2469 Fragaria x ananassa HOM05D002032 ORTHO05D002247 9.7e-12 73.9 41 75.6
Hma1.2p1_0697F.1_g205080 Hydrangea macrophylla HOM05D002032 ORTHO05D002247 9.7e-12 73.9 41 75.6
Hma1.2p1_1975F.1_g309700 Hydrangea macrophylla HOM05D002032 ORTHO05D002247 9.7e-12 73.9 41 75.6
Oeu057402.1 Olea europaea HOM05D002032 ORTHO05D002247 9.7e-12 73.9 41 75.6
Lsat_1_v5_gn_1_77081 Lactuca sativa HOM05D002032 ORTHO05D002247 1.3e-11 73.6 41 73.2
Os05g0421300 Oryza sativa ssp. japonica HOM05D002032 ORTHO05D002247 1.3e-11 73.6 41 75.6
unitig_46.g18006 Utricularia gibba HOM05D002032 ORTHO05D002247 1.3e-11 73.6 40 77.5
MD15G1325200 Malus domestica HOM05D002032 ORTHO05D002247 1.7e-11 73.2 41 73.2
Prupe.6G184800 Prunus persica HOM05D002032 ORTHO05D002247 1.7e-11 73.2 41 73.2
Rhsim10G0115500 Rhododendron simsii HOM05D002032 ORTHO05D002247 1.7e-11 73.2 41 73.2
Sed0019623 Sechium edule HOM05D002032 ORTHO05D002247 1.7e-11 73.2 41 73.2
vmacro09078 Vaccinium macrocarpon HOM05D002032 ORTHO05D002247 1.7e-11 73.2 41 73.2
Zm00001eb245910 Zea mays HOM05D002032 ORTHO05D002247 1.7e-11 73.2 41 73.2
CSS0013103 Camellia sinensis var. sinensis HOM05D002032 ORTHO05D002247 2.2e-11 72.8 40 75.0
Cc07_g15330 Coffea canephora HOM05D002032 ORTHO05D002247 2.2e-11 72.8 41 73.2
COL.COLO4_09955 Corchorus olitorius HOM05D002032 ORTHO05D002247 2.2e-11 72.8 41 75.6
Migut.N02927 Erythranthe guttata HOM05D002032 ORTHO05D002247 2.2e-11 72.8 41 73.2
Lalb_Chr12g0203801 Lupinus albus HOM05D002032 ORTHO05D002247 2.2e-11 72.8 41 73.2
QL06p049680 Quercus lobata HOM05D002032 ORTHO05D002247 2.2e-11 72.8 41 75.6
Sabra05G0062900 Salix brachista HOM05D002032 ORTHO05D002247 2.2e-11 72.8 40 75.0
ECA248G3858 Erigeron canadensis HOM05D002032 ORTHO05D002247 2.8e-11 72.4 41 70.7
Psat6g143160 Pisum sativum HOM05D002032 ORTHO05D002247 2.8e-11 72.4 41 73.2
Zm00001eb183590 Zea mays HOM05D002032 ORTHO05D002247 2.8e-11 72.4 41 73.2
Atru.chr4.78 Acer truncatum HOM05D002032 ORTHO05D002247 3.7e-11 72.0 41 70.7
Glyma.05G179000 Glycine max HOM05D002032 ORTHO05D002247 3.7e-11 72.0 41 73.2
HanXRQChr01g0023631 Helianthus annuus HOM05D002032 ORTHO05D002247 3.7e-11 72.0 40 72.5
Lj4g0005280 Lotus japonicus HOM05D002032 ORTHO05D002247 3.7e-11 72.0 41 73.2
Medtr0276s0010 Medicago truncatula HOM05D002032 ORTHO05D002247 3.7e-11 72.0 41 73.2
Phvul.002G255400 Phaseolus vulgaris HOM05D002032 ORTHO05D002247 3.7e-11 72.0 41 73.2
Psat7g054360 Pisum sativum HOM05D002032 ORTHO05D002247 3.7e-11 72.0 41 73.2
TPR.G34675 Trifolium pratense HOM05D002032 ORTHO05D002247 3.7e-11 72.0 41 73.2
Actinidia12299 Actinidia chinensis HOM05D002032 ORTHO05D002247 4.8e-11 71.6 41 73.2
Ah.05g174130 Amaranthus hybridus HOM05D002032 ORTHO05D002247 4.8e-11 71.6 41 73.2
Ah.05g174140 Amaranthus hybridus HOM05D002032 ORTHO05D002247 4.8e-11 71.6 41 73.2
EL10Ac1g00843 Beta vulgaris HOM05D002032 ORTHO05D002247 4.8e-11 71.6 41 73.2
CiPaw.03G141300 Carya illinoinensis HOM05D002032 ORTHO05D002247 4.8e-11 71.6 41 70.7
AUR62004171 Chenopodium quinoa HOM05D002032 ORTHO05D002247 4.8e-11 71.6 41 73.2
SalBow6G5363 Salvia bowleyana HOM05D002032 ORTHO05D002247 4.8e-11 71.6 41 73.2
Sc12g0007110 Simmondsia chinensis HOM05D002032 ORTHO05D002247 4.8e-11 71.6 41 73.2
VMungo0251G0738 Vigna mungo HOM05D002032 ORTHO05D002247 4.8e-11 71.6 41 73.2
Hma1.2p1_0375F.1_g139020 Hydrangea macrophylla HOM05D002032 ORTHO05D002247 6.3e-11 71.2 41 73.2
Ca_17733_v3 Cicer arietinum L. HOM05D002032 ORTHO05D002247 8.2e-11 70.9 41 70.7
TAR376G0387 Trochodendron aralioides HOM05D002032 ORTHO05D002247 8.2e-11 70.9 40 75.0
AUR62013670 Chenopodium quinoa HOM05D002032 ORTHO05D002247 1.1e-10 70.5 41 73.2
Glyma.08G136500 Glycine max HOM05D002032 ORTHO05D002247 1.1e-10 70.5 41 70.7
TWI53G1473 Tripterygium wilfordii HOM05D002032 ORTHO05D002247 1.1e-10 70.5 41 70.7
TAR628G0855 Trochodendron aralioides HOM05D002032 ORTHO05D002247 1.4e-10 70.1 40 72.5
arahy.Tifrunner.gnm1.ann1.PQ0YCB Arachis hypogaea HOM05D002032 ORTHO05D002247 1.8e-10 69.7 41 70.7
PSO541G6351 Papaver somniferum HOM05D002032 ORTHO05D002247 1.8e-10 69.7 40 72.5
PSO781G0053 Papaver somniferum HOM05D002032 ORTHO05D002247 1.8e-10 69.7 40 72.5
Aqoxy6G00808 Aquilegia oxysepala HOM05D002032 ORTHO05D002247 2.4e-10 69.3 40 72.5
SEGI_03952 Sequoiadendron giganteum HOM05D002032 ORTHO05D002247 2.4e-10 69.3 40 72.5
MSTRG.962 Avicennia marina HOM05D002032 ORTHO05D002247 6.9e-10 67.8 41 68.3
Mapoly0023s0091 Marchantia polymorpha HOM05D002032 ORTHO05D002247 1.7e-08 63.2 37 70.3
Pp3c2_21540 Physcomitrium patens HOM05D002032 ORTHO05D002247 3.8e-08 62.0 37 67.6
SMO203G0226 Selaginella moellendorffii HOM05D002032 ORTHO05D002247 5.5e-07 58.2 40 55.0
Actinidia19887 Actinidia chinensis HOM05D002032 ORTHO05D002247 4.7e-06 55.1 29 79.3


User provided reference genes

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