Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 4.5e-135 484.6 239 100.0
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 1.6e-87 326.6 220 70.5
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 1.1e-85 320.5 231 68.0
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 3.3e-85 318.9 231 67.5
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 7.8e-71 271.2 228 56.6
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 7.8e-71 271.2 228 57.5
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 2.3e-70 269.6 235 57.0
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 6.6e-70 268.1 225 58.7
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 1.1e-69 267.3 228 56.1
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 2.5e-69 266.2 237 55.3
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 3.3e-69 265.8 222 57.7
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 2.1e-68 263.1 196 63.8
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 1.1e-67 260.8 221 57.5
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.1e-67 260.8 242 55.8
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 3.1e-67 259.2 234 54.7
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 1.2e-66 257.3 216 57.4
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 1.5e-66 256.9 226 55.3
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 3.4e-66 255.8 205 60.0
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 3.4e-66 255.8 197 61.9
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 4.4e-66 255.4 218 56.4
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 5.8e-66 255.0 210 56.7
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 9.8e-66 254.2 177 66.1
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 9.8e-66 254.2 215 56.3
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 3.7e-65 252.3 226 56.2
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 4.9e-65 251.9 206 57.8
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 4.9e-65 251.9 217 55.3
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 6.4e-65 251.5 212 56.1
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 7.0e-64 248.1 195 60.0
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 1.2e-63 247.3 217 54.4
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 1.2e-63 247.3 197 59.9
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.0e-62 244.2 213 56.8
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 1.3e-62 243.8 184 61.4
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 1.7e-62 243.4 211 55.9
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 3.0e-62 242.7 187 61.0
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 5.0e-62 241.9 206 57.8
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 1.1e-61 240.7 202 58.9
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 1.5e-61 240.4 203 59.6
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.5e-61 240.4 211 55.5
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 1.5e-61 240.4 170 62.9
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.9e-61 240.0 194 56.7
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.5e-61 239.6 205 56.6
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 3.3e-61 239.2 191 59.7
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 5.6e-61 238.4 210 54.3
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 5.6e-61 238.4 194 54.6
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 5.6e-61 238.4 200 57.5
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 7.3e-61 238.0 221 53.4
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 7.3e-61 238.0 202 56.4
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 9.5e-61 237.7 194 58.2
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.6e-60 236.9 198 57.6
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 3.6e-60 235.7 182 60.4
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 6.2e-60 235.0 206 55.3
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 1.1e-59 234.2 195 56.9
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.4e-59 233.8 228 50.9
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 1.8e-59 233.4 205 55.1
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 2.3e-59 233.0 203 56.2
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 3.1e-59 232.6 186 58.6
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 4.0e-59 232.3 201 51.2
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 4.0e-59 232.3 193 57.5
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 6.8e-59 231.5 172 61.6
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 1.5e-58 230.3 176 56.2
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.6e-58 229.6 219 49.3
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 9.9e-58 227.6 194 53.6
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.3e-57 227.3 166 59.0
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 6.4e-57 224.9 230 47.4
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 6.4e-57 224.9 158 65.2
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 1.1e-56 224.2 202 52.5
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 1.9e-56 223.4 173 56.1
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 1.9e-56 223.4 173 56.1
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 1.9e-56 223.4 188 55.9
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 4.1e-56 222.2 212 49.5
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 5.4e-56 221.9 219 48.4
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 1.6e-55 220.3 194 52.6
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 2.7e-55 219.5 189 52.9
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 2.7e-55 219.5 189 52.9
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 3.5e-55 219.2 203 49.8
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 6.0e-55 218.4 157 63.1
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 1.7e-54 216.9 189 52.4
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 1.7e-54 216.9 183 57.4
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 3.0e-54 216.1 215 47.4
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 5.6e-53 211.8 224 47.8
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.6e-52 210.3 196 51.5
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 2.8e-52 209.5 205 48.8
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 8.9e-51 204.5 182 51.6
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.6e-50 203.0 170 57.1
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 4.4e-50 202.2 164 57.3
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 1.7e-49 200.3 169 54.4
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 1.7e-49 200.3 169 54.4
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.9e-48 196.8 215 48.4
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 2.7e-47 193.0 166 51.8
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 1.5e-42 177.2 156 51.9
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.1e-40 171.0 157 53.5
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 8.7e-38 161.4 140 53.6
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 3.6e-36 156.0 153 49.7
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 1.1e-35 154.5 136 53.7
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 9.0e-35 151.4 141 53.2
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 2.6e-34 149.8 128 58.6
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 4.9e-33 145.6 211 35.1
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 2.4e-32 143.3 134 48.5
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 3.5e-23 112.8 173 35.8
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 3.3e-21 106.3 134 34.3
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 8.2e-20 101.7 76 53.9
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 1.8e-19 100.5 206 31.6
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 9.0e-19 98.2 76 53.9
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 2.6e-18 96.7 68 63.2
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 3.4e-18 96.3 84 50.0
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 1.7e-17 94.0 84 50.0
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 5.5e-16 89.0 168 28.0
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 7.1e-16 88.6 62 62.9
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 1.2e-15 87.8 163 31.3
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 9.7e-13 78.2 170 31.8
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 3.7e-12 76.3 149 28.9
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 8.2e-12 75.1 237 27.8
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 1.1e-11 74.7 83 47.0
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 1.1e-11 74.7 176 29.0
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 1.8e-11 73.9 141 29.8
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 2.0e-10 70.5 161 28.6
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.0e-09 68.2 156 28.8
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 1.3e-09 67.8 166 24.1
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 1.7e-09 67.4 207 24.6
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 2.2e-09 67.0 78 39.7
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 3.8e-09 66.2 178 25.8
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 5.0e-09 65.9 166 23.5
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 1.1e-08 64.7 170 24.7
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.1e-08 64.7 134 26.9
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 2.5e-08 63.5 37 64.9
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 7.2e-08 62.0 170 24.1
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 7.2e-08 62.0 153 26.1
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 1.2e-07 61.2 168 25.0
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 3.6e-07 59.7 155 28.4
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 6.1e-07 58.9 57 47.4
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 1.0e-06 58.2 134 28.4
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 1.4e-06 57.8 170 23.5
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 3.9e-06 56.2 180 23.3


User provided reference genes

Program Settings