Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 4.8e-83 311.2 168 100.0
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 5.6e-76 287.7 168 90.5
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 1.5e-28 130.2 181 49.2
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 5.7e-28 128.3 184 47.3
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 1.3e-27 127.1 116 56.9
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 3.5e-25 119.0 158 51.3
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 1.3e-24 117.1 142 43.0
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 1.7e-24 116.7 125 51.2
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 2.9e-24 115.9 126 50.8
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.9e-24 115.9 162 44.4
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 3.8e-24 115.5 134 47.8
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 5.0e-24 115.2 156 43.6
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 8.5e-24 114.4 138 50.0
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 4.2e-23 112.1 155 43.9
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 1.2e-22 110.5 158 41.8
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 1.2e-22 110.5 120 48.3
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 1.2e-22 110.5 120 48.3
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.6e-22 110.2 171 40.9
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.1e-22 109.8 161 43.5
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 2.7e-22 109.4 164 42.1
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 2.7e-22 109.4 150 42.0
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.7e-22 109.4 160 44.4
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.7e-22 109.4 160 42.5
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 3.6e-22 109.0 130 48.5
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 3.6e-22 109.0 153 41.2
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 3.6e-22 109.0 114 51.8
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 3.6e-22 109.0 160 43.8
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 8.0e-22 107.8 126 46.0
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.0e-21 107.5 160 44.4
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 1.0e-21 107.5 144 47.2
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 1.4e-21 107.1 115 50.4
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 1.8e-21 106.7 140 44.3
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 1.8e-21 106.7 124 50.0
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 2.3e-21 106.3 112 43.8
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 3.0e-21 105.9 155 41.9
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 3.0e-21 105.9 159 41.5
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.0e-21 105.9 159 41.5
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 5.2e-21 105.1 144 42.4
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 6.8e-21 104.8 187 41.2
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 6.8e-21 104.8 175 40.0
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 6.8e-21 104.8 174 36.2
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 6.8e-21 104.8 145 42.1
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.2e-20 104.0 170 38.8
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 2.0e-20 103.2 135 44.4
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 2.6e-20 102.8 149 40.9
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.6e-20 102.8 134 44.8
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 3.4e-20 102.4 158 43.7
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 4.4e-20 102.1 152 41.4
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.4e-20 102.1 160 39.4
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.4e-20 102.1 124 45.2
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 4.4e-20 102.1 112 53.6
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 4.4e-20 102.1 112 53.6
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 7.5e-20 101.3 179 37.4
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 7.5e-20 101.3 151 43.0
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 7.5e-20 101.3 168 40.5
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 7.5e-20 101.3 141 44.7
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 9.8e-20 100.9 168 41.1
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 9.8e-20 100.9 151 39.1
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 1.3e-19 100.5 166 39.8
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 1.7e-19 100.1 169 39.1
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 1.7e-19 100.1 122 44.3
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.8e-19 99.4 147 40.1
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.8e-19 99.4 126 46.8
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 2.8e-19 99.4 119 43.7
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.7e-19 99.0 171 37.4
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 3.7e-19 99.0 127 41.7
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 4.9e-19 98.6 174 37.4
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 4.9e-19 98.6 161 39.1
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 6.3e-19 98.2 162 39.5
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 6.3e-19 98.2 154 38.3
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 8.3e-19 97.8 147 40.1
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 8.3e-19 97.8 107 52.3
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 1.1e-18 97.4 156 42.3
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 1.1e-18 97.4 159 37.7
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.1e-18 97.4 124 44.4
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 1.4e-18 97.1 163 39.9
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 1.4e-18 97.1 107 47.7
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 1.8e-18 96.7 108 45.4
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 2.4e-18 96.3 127 41.7
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 2.4e-18 96.3 150 41.3
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 4.1e-18 95.5 167 38.3
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 7.0e-18 94.7 157 42.7
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 7.0e-18 94.7 156 38.5
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 9.2e-18 94.4 124 43.5
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 9.2e-18 94.4 124 42.7
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 9.2e-18 94.4 124 42.7
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 9.2e-18 94.4 145 39.3
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.2e-17 94.0 113 47.8
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 1.2e-17 94.0 124 42.7
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.2e-17 94.0 153 39.2
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.2e-17 94.0 141 39.0
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.2e-17 94.0 127 41.7
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.2e-17 94.0 122 43.4
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.6e-17 93.6 151 40.4
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 2.0e-17 93.2 161 41.0
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 2.0e-17 93.2 161 41.0
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 3.5e-17 92.4 129 38.8
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 4.5e-17 92.0 153 37.3
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 4.5e-17 92.0 152 38.8
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 4.5e-17 92.0 151 39.1
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 4.5e-17 92.0 133 43.6
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 4.5e-17 92.0 141 40.4
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 5.9e-17 91.7 164 39.6
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 7.7e-17 91.3 77 59.7
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 7.7e-17 91.3 134 44.0
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.3e-16 90.5 158 39.9
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 3.8e-16 89.0 157 37.6
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 3.8e-16 89.0 183 35.5
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 5.0e-16 88.6 135 39.3
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 6.6e-16 88.2 138 38.4
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 6.6e-16 88.2 158 35.4
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 8.6e-16 87.8 148 37.8
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 8.6e-16 87.8 160 40.6
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 3.3e-15 85.9 143 38.5
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 3.3e-15 85.9 143 38.5
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 3.3e-15 85.9 143 38.5
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 4.3e-15 85.5 159 38.4
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 5.6e-15 85.1 130 41.5
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 2.1e-14 83.2 144 39.6
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 8.0e-14 81.3 115 43.5
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 1.4e-13 80.5 157 35.0
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.3e-13 79.7 128 36.7
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 2.3e-13 79.7 157 35.0
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 3.0e-13 79.3 159 35.8
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 5.2e-13 78.6 157 34.4
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 5.2e-13 78.6 157 34.4
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 1.2e-12 77.4 137 37.2
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 1.2e-12 77.4 125 34.4
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 2.6e-12 76.3 44 75.0
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 9.8e-12 74.3 155 34.2
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 1.8e-10 70.1 119 36.1
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 1.8e-10 70.1 109 36.7
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 1.6e-09 67.0 47 63.8
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 2.0e-09 66.6 125 32.0
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 3.5e-09 65.9 112 31.2
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 5.0e-08 62.0 125 32.8
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.1e-07 60.8 89 43.8
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 4.3e-07 58.9 75 45.3
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.3e-07 58.9 139 34.5
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 5.6e-07 58.5 151 31.1
Migut.E00712 Erythranthe guttata HOM05D005336 ORTHO05D006511 1.2e-06 57.4 102 38.2


User provided reference genes

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