Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 0.0e+00 2374.0 1210 100.0
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 0.0e+00 1993.8 1070 96.4
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 0.0e+00 1163.3 1130 58.3
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 0.0e+00 1124.4 1130 57.2
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 1.2e-252 877.5 1142 47.0
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 2.9e-214 750.0 1148 42.9
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 1.4e-213 747.7 1150 42.7
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 5.1e-195 686.0 1132 40.2
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.3e-190 671.4 1135 40.8
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.7e-190 671.0 1127 38.9
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 7.9e-188 662.1 1101 39.0
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 5.1e-187 659.4 1127 38.0
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 6.7e-187 659.1 1131 37.4
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 6.7e-187 659.1 1144 39.2
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 5.7e-186 656.0 1126 37.2
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 5.7e-186 656.0 1126 37.2
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 9.7e-178 628.6 1142 38.7
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.1e-176 625.2 1146 37.3
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 1.8e-176 624.4 1146 37.3
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 4.1e-176 623.2 1128 38.4
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 5.3e-176 622.9 1145 38.5
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 2.5e-173 614.0 1160 37.8
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 7.2e-173 612.5 1161 37.6
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 4.0e-171 606.7 1152 36.9
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 3.3e-170 603.6 1156 37.5
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 9.1e-168 595.5 1149 37.1
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 2.2e-166 590.9 1145 35.5
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 1.2e-164 585.1 1137 35.8
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 1.1e-160 572.0 1117 37.6
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 1.9e-157 561.2 1146 35.3
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 3.2e-157 560.5 1148 35.2
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 2.7e-156 557.4 1118 36.5
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 1.7e-153 548.1 1148 36.1
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.8e-152 544.7 1152 34.7
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 4.1e-152 543.5 1125 35.5
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 2.7e-151 540.8 1129 35.8
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.3e-150 538.5 1142 35.6
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 6.6e-150 536.2 1151 34.2
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 1.5e-149 535.0 1142 34.4
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 4.3e-149 533.5 1151 34.8
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 9.5e-149 532.3 1116 35.1
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 1.8e-147 528.1 1128 35.4
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 5.2e-147 526.6 1132 34.3
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 4.4e-146 523.5 1123 34.9
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.1e-144 518.8 1143 33.5
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.4e-144 518.5 1136 34.0
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 2.4e-144 517.7 1099 35.0
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 7.0e-144 516.2 1125 34.6
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 9.2e-144 515.8 1164 33.4
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 2.7e-143 514.2 1147 33.7
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.5e-143 513.8 1157 33.5
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 5.0e-142 510.0 1178 32.9
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 4.3e-141 506.9 1143 33.7
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 3.6e-140 503.8 1176 32.7
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.3e-139 501.1 1141 34.0
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 3.7e-137 493.8 1136 33.3
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 4.1e-136 490.3 1140 34.2
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 1.6e-135 488.4 1243 32.5
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.3e-134 485.3 1135 32.9
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.9e-134 483.8 1125 34.8
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 1.5e-133 481.9 1140 33.1
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 1.6e-132 478.4 1078 33.0
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 1.1e-131 475.7 1142 32.2
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 1.4e-131 475.3 1130 32.7
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 2.3e-131 474.6 987 36.3
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 3.1e-131 474.2 1132 33.0
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 8.9e-131 472.6 1124 32.3
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 9.8e-130 469.2 1129 32.5
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 1.4e-128 465.3 1036 33.7
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 3.2e-128 464.2 1129 32.4
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 2.1e-127 461.5 1124 32.3
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 3.5e-127 460.7 1130 32.9
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 5.1e-126 456.8 1067 33.5
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 6.6e-126 456.4 1137 32.4
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 1.1e-125 455.7 1133 32.0
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 1.6e-124 451.8 1133 32.3
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 4.7e-124 450.3 1128 32.2
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 1.5e-122 445.3 1142 31.9
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 4.4e-122 443.7 977 34.9
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 5.8e-122 443.4 1127 31.6
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 4.1e-120 437.2 1123 31.2
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 2.7e-119 434.5 1086 33.1
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 4.0e-115 420.6 1130 30.7
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 4.4e-114 417.2 843 34.4
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 1.4e-112 412.1 1196 30.4
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 9.3e-112 409.5 1154 30.2
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 2.1e-108 398.3 1195 30.0
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 6.2e-108 396.7 888 34.3
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.1e-108 396.4 900 33.4
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.4e-99 368.2 881 33.5
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 6.9e-99 366.7 913 32.4
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 6.0e-95 353.6 450 45.8
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 3.3e-93 347.8 639 38.0
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 3.3e-93 347.8 409 48.4
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 2.7e-87 328.2 1098 26.8
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 4.1e-83 314.3 1202 25.4
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.9e-77 295.4 930 29.9
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 5.7e-77 293.9 1240 25.2
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 2.7e-63 248.4 312 44.6
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 4.7e-63 247.7 278 50.7
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 2.2e-60 238.8 306 45.1
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 1.8e-59 235.7 306 45.4
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 2.4e-59 235.3 306 45.4
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.1e-59 235.0 306 44.8
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 1.2e-58 233.0 306 44.8
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 4.0e-54 218.0 795 28.4
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 4.8e-52 211.1 316 40.5
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 8.2e-52 210.3 241 50.6
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 4.1e-51 208.0 921 26.5
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 5.3e-51 207.6 316 39.2
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.7e-49 202.6 306 41.2
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 6.5e-49 200.7 1269 23.0
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 1.2e-47 196.4 1240 21.8
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 1.2e-45 189.9 389 33.9
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.4e-43 182.2 239 42.7
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 3.5e-42 178.3 175 52.6
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 3.2e-40 171.8 1141 23.0
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 6.1e-39 167.5 190 48.9
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 2.8e-36 158.7 169 50.3
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 3.7e-36 158.3 801 25.0
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 4.1e-35 154.8 175 46.9
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 7.0e-35 154.1 392 31.9
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.2e-34 153.3 169 49.1
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 2.0e-34 152.5 187 44.9
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 5.6e-32 144.4 167 49.1
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 5.6e-24 117.9 256 30.5
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 1.1e-19 103.6 368 25.3
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 7.0e-19 100.9 303 28.4
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 1.3e-17 96.7 146 43.8
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.5e-16 93.2 425 25.9
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.0e-14 85.1 292 28.4
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 8.9e-14 84.0 99 46.5
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 7.5e-13 80.9 99 46.5
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.2e-10 73.6 364 23.9
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 2.1e-10 72.8 111 41.4
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 4.6e-10 71.6 203 30.0
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 4.3e-08 65.1 85 42.4
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.8e-06 59.7 140 30.0


User provided reference genes

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