Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold98G29422 Striga asiatica HOM05D001357 ORTHO05D001224 1.7e-60 235.7 112 100.0
SGA_v2.0_scaffold98G29420 Striga asiatica HOM05D001357 ORTHO05D001224 8.0e-18 94.0 150 34.7
Migut.J01302 Erythranthe guttata HOM05D001357 ORTHO05D001224 4.4e-16 88.2 68 52.9
Migut.B01459 Erythranthe guttata HOM05D001357 ORTHO05D001224 9.7e-16 87.0 158 34.8
Migut.B01457 Erythranthe guttata HOM05D001357 ORTHO05D001224 1.3e-15 86.7 158 34.8
Migut.N00704 Erythranthe guttata HOM05D001357 ORTHO05D001224 1.7e-15 86.3 153 36.6
Migut.C00075 Erythranthe guttata HOM05D001357 ORTHO05D001224 2.8e-15 85.5 153 35.9
CiPaw.12G062100 Carya illinoinensis HOM05D001357 ORTHO05D001224 8.5e-12 73.9 72 50.0
TAR629G2684 Trochodendron aralioides HOM05D001357 ORTHO05D001224 9.4e-11 70.5 66 51.5
Cfa012414 Carpinus fangiana HOM05D001357 ORTHO05D001224 1.2e-10 70.1 72 48.6
Haze_02946 Corylus avellana HOM05D001357 ORTHO05D001224 2.1e-10 69.3 57 50.9
Duzib084G0022 Durio zibethinus HOM05D001357 ORTHO05D001224 2.7e-10 68.9 66 47.0
Migut.C00074 Erythranthe guttata HOM05D001357 ORTHO05D001224 4.7e-10 68.2 38 71.1
Lj2A242T74 Lonicera japonica HOM05D001357 ORTHO05D001224 4.7e-10 68.2 70 47.1
Haze_08262 Corylus avellana HOM05D001357 ORTHO05D001224 8.0e-10 67.4 72 45.8
Aqoxy3G02446 Aquilegia oxysepala HOM05D001357 ORTHO05D001224 1.4e-09 66.6 95 41.1
Cfa010989 Carpinus fangiana HOM05D001357 ORTHO05D001224 1.4e-09 66.6 57 49.1
MSTRG.11994 Avicennia marina HOM05D001357 ORTHO05D001224 2.3e-09 65.9 61 49.2
Nn1g00569 Nelumbo nucifera HOM05D001357 ORTHO05D001224 2.3e-09 65.9 100 40.0
CiPaw.11G091600 Carya illinoinensis HOM05D001357 ORTHO05D001224 3.0e-09 65.5 62 50.0
Potri.001G144200 Populus trichocarpa HOM05D001357 ORTHO05D001224 3.0e-09 65.5 97 37.1
Sabra03G0060000 Salix brachista HOM05D001357 ORTHO05D001224 3.0e-09 65.5 106 38.7
Atru.chr6.1746 Acer truncatum HOM05D001357 ORTHO05D001224 4.0e-09 65.1 66 45.5
Atru.chr6.1749 Acer truncatum HOM05D001357 ORTHO05D001224 4.0e-09 65.1 66 45.5
Carub.0004s1702 Capsella rubella HOM05D001357 ORTHO05D001224 4.0e-09 65.1 63 42.9
Ciclev10030828m.g Citrus clementina HOM05D001357 ORTHO05D001224 4.0e-09 65.1 66 43.9
Potri.003G090000 Populus trichocarpa HOM05D001357 ORTHO05D001224 5.2e-09 64.7 105 37.1
RcHm_v2.0_Chr7g0209211 Rosa chinensis HOM05D001357 ORTHO05D001224 5.2e-09 64.7 71 46.5
MSTRG.25595 Avicennia marina HOM05D001357 ORTHO05D001224 6.8e-09 64.3 63 49.2
ClCG10G001770 Citrullus lanatus HOM05D001357 ORTHO05D001224 6.8e-09 64.3 56 50.0
PSO063G7676 Papaver somniferum HOM05D001357 ORTHO05D001224 6.8e-09 64.3 99 37.4
SGA_v2.0_scaffold253G45130 Striga asiatica HOM05D001357 ORTHO05D001224 6.8e-09 64.3 70 45.7
Migut.A00780 Erythranthe guttata HOM05D001357 ORTHO05D001224 8.8e-09 63.9 56 51.8
FAN04G3086 Fragaria x ananassa HOM05D001357 ORTHO05D001224 8.8e-09 63.9 71 46.5
CSS0024345 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 1.2e-08 63.5 95 42.1
Eucgr.D02184 Eucalyptus grandis HOM05D001357 ORTHO05D001224 1.2e-08 63.5 70 44.3
FvH4_5g21710 Fragaria vesca HOM05D001357 ORTHO05D001224 1.2e-08 63.5 71 45.1
FAN18G0885 Fragaria x ananassa HOM05D001357 ORTHO05D001224 1.2e-08 63.5 71 45.1
Actinidia25953 Actinidia chinensis HOM05D001357 ORTHO05D001224 1.5e-08 63.2 56 51.8
FAN13G3282 Fragaria x ananassa HOM05D001357 ORTHO05D001224 1.5e-08 63.2 71 46.5
Hma1.2p1_2785F.1_g328450 Hydrangea macrophylla HOM05D001357 ORTHO05D001224 1.5e-08 63.2 63 47.6
Peaxi162Scf00102g00519 Petunia axillaris HOM05D001357 ORTHO05D001224 1.5e-08 63.2 67 43.3
CsaV3_3G001870 Cucumis sativus L. HOM05D001357 ORTHO05D001224 2.0e-08 62.8 56 48.2
Hma1.2p1_0991F.1_g244975 Hydrangea macrophylla HOM05D001357 ORTHO05D001224 2.0e-08 62.8 63 47.6
MD06G1032100 Malus domestica HOM05D001357 ORTHO05D001224 2.0e-08 62.8 71 45.1
Manes.15G169400 Manihot esculenta HOM05D001357 ORTHO05D001224 2.0e-08 62.8 56 48.2
Medtr4g098560 Medicago truncatula HOM05D001357 ORTHO05D001224 2.0e-08 62.8 79 40.5
Hund14420 Selenicereus undatus HOM05D001357 ORTHO05D001224 2.0e-08 62.8 93 37.6
TWI60G0354 Tripterygium wilfordii HOM05D001357 ORTHO05D001224 2.0e-08 62.8 71 46.5
Glyma.05G112600 Glycine max HOM05D001357 ORTHO05D001224 2.6e-08 62.4 74 45.9
Glyma.17G154400 Glycine max HOM05D001357 ORTHO05D001224 2.6e-08 62.4 71 43.7
Lj8C291T15 Lonicera japonica HOM05D001357 ORTHO05D001224 2.6e-08 62.4 70 44.3
Oeu049548.1 Olea europaea HOM05D001357 ORTHO05D001224 2.6e-08 62.4 56 48.2
Psat4g079320 Pisum sativum HOM05D001357 ORTHO05D001224 2.6e-08 62.4 82 39.0
Prupe.5G040000 Prunus persica HOM05D001357 ORTHO05D001224 2.6e-08 62.4 71 46.5
PGR031G1014 Punica granatum HOM05D001357 ORTHO05D001224 2.6e-08 62.4 92 41.3
ATR0049G028 Amborella trichopoda HOM05D001357 ORTHO05D001224 3.4e-08 62.0 52 48.1
CSS0039848 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 3.4e-08 62.0 56 48.2
CSS0044588 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 3.4e-08 62.0 56 48.2
Peaxi162Scf00695g00516 Petunia axillaris HOM05D001357 ORTHO05D001224 3.4e-08 62.0 56 48.2
Rhsim11G0013300 Rhododendron simsii HOM05D001357 ORTHO05D001224 3.4e-08 62.0 55 49.1
Sabra01G0112600 Salix brachista HOM05D001357 ORTHO05D001224 3.4e-08 62.0 70 41.4
Sed0026328 Sechium edule HOM05D001357 ORTHO05D001224 3.4e-08 62.0 56 46.4
VMungo0251G1991 Vigna mungo HOM05D001357 ORTHO05D001224 3.4e-08 62.0 56 44.6
BcaB02g09439 Brassica carinata HOM05D001357 ORTHO05D001224 4.4e-08 61.6 56 44.6
Lj4g0020023 Lotus japonicus HOM05D001357 ORTHO05D001224 4.4e-08 61.6 86 41.9
PSO782G0194 Papaver somniferum HOM05D001357 ORTHO05D001224 4.4e-08 61.6 99 35.4
COL.COLO4_17067 Corchorus olitorius HOM05D001357 ORTHO05D001224 5.7e-08 61.2 66 42.4
QL12p006175 Quercus lobata HOM05D001357 ORTHO05D001224 5.7e-08 61.2 71 40.8
Solyc09g074200.3 Solanum lycopersicum HOM05D001357 ORTHO05D001224 5.7e-08 61.2 100 35.0
Sopen08g002950 Solanum pennellii HOM05D001357 ORTHO05D001224 5.7e-08 61.2 59 50.8
Sopen09g029000 Solanum pennellii HOM05D001357 ORTHO05D001224 5.7e-08 61.2 100 35.0
AT2G35330 Arabidopsis thaliana HOM05D001357 ORTHO05D001224 7.5e-08 60.8 102 33.3
A05p10470 Brassica napus HOM05D001357 ORTHO05D001224 7.5e-08 60.8 56 42.9
Ca_22065_v3 Cicer arietinum L. HOM05D001357 ORTHO05D001224 7.5e-08 60.8 82 36.6
Cc08_g02460 Coffea canephora HOM05D001357 ORTHO05D001224 7.5e-08 60.8 56 46.4
Eucgr.E00293 Eucalyptus grandis HOM05D001357 ORTHO05D001224 7.5e-08 60.8 137 28.5
Lalb_Chr16g0386061 Lupinus albus HOM05D001357 ORTHO05D001224 7.5e-08 60.8 56 48.2
Sp4g17530 Schrenkiella parvula HOM05D001357 ORTHO05D001224 7.5e-08 60.8 56 42.9
Sc22g0001470 Simmondsia chinensis HOM05D001357 ORTHO05D001224 7.5e-08 60.8 66 43.9
Sopen08g025680 Solanum pennellii HOM05D001357 ORTHO05D001224 7.5e-08 60.8 99 36.4
vmacro00340 Vaccinium macrocarpon HOM05D001357 ORTHO05D001224 7.5e-08 60.8 55 47.3
MELO3C013861.2 Cucumis melo HOM05D001357 ORTHO05D001224 9.8e-08 60.5 56 46.4
Phvul.003G229800 Phaseolus vulgaris HOM05D001357 ORTHO05D001224 9.8e-08 60.5 57 45.6
Solyc08g006980.3 Solanum lycopersicum HOM05D001357 ORTHO05D001224 9.8e-08 60.5 59 49.2
Solyc08g077100.3 Solanum lycopersicum HOM05D001357 ORTHO05D001224 9.8e-08 60.5 99 35.4
Duzib205G0119 Durio zibethinus HOM05D001357 ORTHO05D001224 1.3e-07 60.1 66 39.4
Thhalv10016336m.g Eutrema salsugineum HOM05D001357 ORTHO05D001224 1.3e-07 60.1 99 34.3
FAN08G0193 Fragaria x ananassa HOM05D001357 ORTHO05D001224 1.3e-07 60.1 71 45.1
AUR62007241 Chenopodium quinoa HOM05D001357 ORTHO05D001224 1.7e-07 59.7 59 47.5
ECA232G1637 Erigeron canadensis HOM05D001357 ORTHO05D001224 1.7e-07 59.7 58 46.6
Gohir.A12G209300 Gossypium hirsutum HOM05D001357 ORTHO05D001224 1.7e-07 59.7 56 46.4
Gohir.D12G212000 Gossypium hirsutum HOM05D001357 ORTHO05D001224 1.7e-07 59.7 56 46.4
Gorai.008G227600 Gossypium raimondii HOM05D001357 ORTHO05D001224 1.7e-07 59.7 56 46.4
Sc07g0008760 Simmondsia chinensis HOM05D001357 ORTHO05D001224 1.7e-07 59.7 56 44.6
GSVIVG01013185001 Vitis vinifera HOM05D001357 ORTHO05D001224 1.7e-07 59.7 56 46.4
HanXRQChr06g0167351 Helianthus annuus HOM05D001357 ORTHO05D001224 2.2e-07 59.3 56 46.4
Nitab4.5_0000535g0020 Nicotiana tabacum HOM05D001357 ORTHO05D001224 2.2e-07 59.3 56 44.6
Nitab4.5_0000804g0050 Nicotiana tabacum HOM05D001357 ORTHO05D001224 2.2e-07 59.3 56 44.6
unitig_26.g9701 Utricularia gibba HOM05D001357 ORTHO05D001224 2.2e-07 59.3 59 49.2
VMungo1215G1117 Vigna mungo HOM05D001357 ORTHO05D001224 2.2e-07 59.3 59 50.8
BcaB02g09445 Brassica carinata HOM05D001357 ORTHO05D001224 2.8e-07 58.9 97 34.0
BcaC02g11634 Brassica carinata HOM05D001357 ORTHO05D001224 2.8e-07 58.9 97 34.0
C04p12870 Brassica napus HOM05D001357 ORTHO05D001224 2.8e-07 58.9 97 34.0
BolC4t22931H Brassica oleracea HOM05D001357 ORTHO05D001224 2.8e-07 58.9 93 33.3
BraA05t19985Z Brassica rapa HOM05D001357 ORTHO05D001224 2.8e-07 58.9 56 41.1
AUR62018759 Chenopodium quinoa HOM05D001357 ORTHO05D001224 2.8e-07 58.9 59 47.5
Gohir.A03G001900 Gossypium hirsutum HOM05D001357 ORTHO05D001224 2.8e-07 58.9 56 46.4
Gohir.D03G170400 Gossypium hirsutum HOM05D001357 ORTHO05D001224 2.8e-07 58.9 56 46.4
Gorai.003G180700 Gossypium raimondii HOM05D001357 ORTHO05D001224 3.7e-07 58.5 56 46.4
Lsat_1_v5_gn_6_87960 Lactuca sativa HOM05D001357 ORTHO05D001224 3.7e-07 58.5 55 47.3
AL4G31360 Arabidopsis lyrata HOM05D001357 ORTHO05D001224 4.8e-07 58.2 56 42.9
EL10Ac5g12173 Beta vulgaris HOM05D001357 ORTHO05D001224 4.8e-07 58.2 99 34.3
BcaB02g09455 Brassica carinata HOM05D001357 ORTHO05D001224 4.8e-07 58.2 147 27.2
Thhalv10010162m.g Eutrema salsugineum HOM05D001357 ORTHO05D001224 4.8e-07 58.2 99 33.3
Lalb_Chr09g0329481 Lupinus albus HOM05D001357 ORTHO05D001224 4.8e-07 58.2 56 44.6
Phvul.002G006400 Phaseolus vulgaris HOM05D001357 ORTHO05D001224 4.8e-07 58.2 59 47.5
PGSC0003DMG400020519 Solanum tuberosum HOM05D001357 ORTHO05D001224 4.8e-07 58.2 59 47.5
Aa31LG9G15340 Aethionema arabicum HOM05D001357 ORTHO05D001224 6.3e-07 57.8 92 37.0
Lalb_Chr09g0323871 Lupinus albus HOM05D001357 ORTHO05D001224 6.3e-07 57.8 56 46.4
TPR.G28656 Trifolium pratense HOM05D001357 ORTHO05D001224 6.3e-07 57.8 82 36.6
TAR636G2541 Trochodendron aralioides HOM05D001357 ORTHO05D001224 6.3e-07 57.8 104 38.5
ECA240G0341 Erigeron canadensis HOM05D001357 ORTHO05D001224 8.3e-07 57.4 56 46.4
Lsat_1_v5_gn_3_16741 Lactuca sativa HOM05D001357 ORTHO05D001224 8.3e-07 57.4 59 47.5
Lalb_Chr05g0213991 Lupinus albus HOM05D001357 ORTHO05D001224 8.3e-07 57.4 56 42.9
Pp3c25_14470 Physcomitrium patens HOM05D001357 ORTHO05D001224 1.1e-06 57.0 57 47.4
Ah.12g054570 Amaranthus hybridus HOM05D001357 ORTHO05D001224 1.4e-06 56.6 56 42.9
CDE06G1440 Ceratophyllum demersum HOM05D001357 ORTHO05D001224 1.4e-06 56.6 63 44.4
arahy.Tifrunner.gnm1.ann1.WDEP49 Arachis hypogaea HOM05D001357 ORTHO05D001224 1.8e-06 56.2 67 44.8
Lj9A48T13 Lonicera japonica HOM05D001357 ORTHO05D001224 1.8e-06 56.2 54 48.1
THA.LOC104807960 Tarenaya hassleriana HOM05D001357 ORTHO05D001224 1.8e-06 56.2 62 41.9
arahy.Tifrunner.gnm1.ann1.L5SQ1T Arachis hypogaea HOM05D001357 ORTHO05D001224 2.4e-06 55.8 67 43.3
SGA_v2.0_scaffold96G28953 Striga asiatica HOM05D001357 ORTHO05D001224 2.4e-06 55.8 108 37.0
THA.LOC104812745 Tarenaya hassleriana HOM05D001357 ORTHO05D001224 2.4e-06 55.8 55 41.8
TAR636G0131 Trochodendron aralioides HOM05D001357 ORTHO05D001224 2.4e-06 55.8 58 44.8
TAR636G2306 Trochodendron aralioides HOM05D001357 ORTHO05D001224 2.4e-06 55.8 58 44.8
arahy.Tifrunner.gnm1.ann1.5XY2RS Arachis hypogaea HOM05D001357 ORTHO05D001224 3.1e-06 55.5 52 42.3
arahy.Tifrunner.gnm1.ann1.AR7ULQ Arachis hypogaea HOM05D001357 ORTHO05D001224 3.1e-06 55.5 52 42.3
Hma1.2p1_2318F.1_g319770 Hydrangea macrophylla HOM05D001357 ORTHO05D001224 3.1e-06 55.5 48 52.1
Os09g0371700 Oryza sativa ssp. japonica HOM05D001357 ORTHO05D001224 3.1e-06 55.5 55 41.8
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 3.1e-06 55.5 90 36.7
Atru.chr9.757 Acer truncatum HOM05D002339 ORTHO05D002545 4.1e-06 55.1 52 44.2
AL1G46780 Arabidopsis lyrata HOM05D001357 ORTHO05D001224 4.1e-06 55.1 107 36.4
Hma1.2p1_0592F.1_g185280 Hydrangea macrophylla HOM05D002339 ORTHO05D002545 4.1e-06 55.1 52 44.2
QL04p024800 Quercus lobata HOM05D001357 ORTHO05D001224 4.1e-06 55.1 54 46.3
PGSC0003DMG400003811 Solanum tuberosum HOM05D001357 ORTHO05D001224 4.1e-06 55.1 100 32.0
BcaC07g41328 Brassica carinata HOM05D002339 ORTHO05D002545 5.4e-06 54.7 89 37.1
C08p43380 Brassica napus HOM05D002339 ORTHO05D002545 5.4e-06 54.7 89 37.1
BolC8t51887H Brassica oleracea HOM05D002339 ORTHO05D002545 5.4e-06 54.7 89 37.1
Carub.0001s3094 Capsella rubella HOM05D001357 ORTHO05D001224 5.4e-06 54.7 108 36.1
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 5.4e-06 54.7 90 35.6
A08p30390 Brassica napus HOM05D002339 ORTHO05D002545 7.0e-06 54.3 89 34.8
C08p18640 Brassica napus HOM05D002339 ORTHO05D002545 7.0e-06 54.3 89 34.8
BolC8t49490H Brassica oleracea HOM05D002339 ORTHO05D002545 7.0e-06 54.3 89 34.8
BraA08t34972Z Brassica rapa HOM05D002339 ORTHO05D002545 7.0e-06 54.3 89 34.8
Mapoly0042s0028 Marchantia polymorpha HOM05D001357 ORTHO05D001224 7.0e-06 54.3 57 47.4
Sabra15G0077600 Salix brachista HOM05D002339 ORTHO05D002545 7.0e-06 54.3 52 44.2
Zm00001eb094680 Zea mays HOM05D001357 ORTHO05D001224 7.0e-06 54.3 50 48.0
BcaB07g32948 Brassica carinata HOM05D001357 ORTHO05D001224 9.1e-06 53.9 108 36.1
Carub.0006s3405 Capsella rubella HOM05D001357 ORTHO05D001224 9.1e-06 53.9 61 42.6
CDE05G0306 Ceratophyllum demersum HOM05D002339 ORTHO05D002545 9.1e-06 53.9 89 37.1
Thhalv10006944m.g Eutrema salsugineum HOM05D001357 ORTHO05D001224 9.1e-06 53.9 108 35.2
PSO782G5563 Papaver somniferum HOM05D002339 ORTHO05D002545 9.1e-06 53.9 52 38.5
Potri.015G050300 Populus trichocarpa HOM05D002339 ORTHO05D002545 9.1e-06 53.9 52 42.3
Sp6g03040 Schrenkiella parvula HOM05D001357 ORTHO05D001224 9.1e-06 53.9 62 41.9


User provided reference genes

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