Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold98G29344 Striga asiatica HOM05D004750 ORTHO05D006207 1.4e-78 296.2 145 100.0
SGA_v2.0_scaffold80G25776 Striga asiatica HOM05D004750 ORTHO05D006207 3.7e-15 85.5 51 78.4
Migut.N02195 Erythranthe guttata HOM05D004750 ORTHO05D006207 6.5e-12 74.7 83 49.4
SalBow6G6555 Salvia bowleyana HOM05D004750 ORTHO05D006207 8.5e-12 74.3 51 68.6
Nitab4.5_0004303g0040 Nicotiana tabacum HOM05D004750 ORTHO05D006207 1.6e-10 70.1 91 44.0
Oeu026229.2 Olea europaea HOM05D004750 ORTHO05D006207 2.1e-10 69.7 52 59.6
Nitab4.5_0000086g0140 Nicotiana tabacum HOM05D004750 ORTHO05D006207 6.1e-10 68.2 51 62.7
Peaxi162Scf00134g00912 Petunia axillaris HOM05D004750 ORTHO05D006207 3.0e-09 65.9 51 58.8
DCAR_012532 Daucus carota HOM05D004750 ORTHO05D006207 3.9e-09 65.5 54 61.1
CANSAT01G0335 Cannabis sativa HOM05D004750 ORTHO05D006207 5.1e-09 65.1 51 60.8
RcHm_v2.0_Chr6g0288821 Rosa chinensis HOM05D004750 ORTHO05D006207 5.1e-09 65.1 51 60.8
Actinidia09562 Actinidia chinensis HOM05D004750 ORTHO05D006207 6.7e-09 64.7 54 59.3
Haze_24596 Corylus avellana HOM05D004750 ORTHO05D006207 6.7e-09 64.7 75 45.3
Eucgr.B01530 Eucalyptus grandis HOM05D004750 ORTHO05D006207 6.7e-09 64.7 51 60.8
Thecc.01G261600 Theobroma cacao HOM05D004750 ORTHO05D006207 6.7e-09 64.7 54 59.3
FAN20G0807 Fragaria x ananassa HOM05D004750 ORTHO05D006207 8.8e-09 64.3 84 46.4
Cfa002398 Carpinus fangiana HOM05D004750 ORTHO05D006207 1.5e-08 63.5 76 44.7
FvH4_2g21920 Fragaria vesca HOM05D004750 ORTHO05D006207 1.5e-08 63.5 70 50.0
FAN15G0403 Fragaria x ananassa HOM05D004750 ORTHO05D006207 1.5e-08 63.5 70 50.0
FAN24G1514 Fragaria x ananassa HOM05D004750 ORTHO05D006207 1.5e-08 63.5 70 50.0
MD10G1187200 Malus domestica HOM05D004750 ORTHO05D006207 1.5e-08 63.5 70 48.6
TAR362G0996 Trochodendron aralioides HOM05D004750 ORTHO05D006207 1.5e-08 63.5 72 47.2
Cc01_g18500 Coffea canephora HOM05D004750 ORTHO05D006207 2.0e-08 63.2 52 55.8
Gohir.A08G189200 Gossypium hirsutum HOM05D004750 ORTHO05D006207 2.0e-08 63.2 54 57.4
Gohir.D08G207700 Gossypium hirsutum HOM05D004750 ORTHO05D006207 2.0e-08 63.2 54 57.4
Gorai.004G220100 Gossypium raimondii HOM05D004750 ORTHO05D006207 2.0e-08 63.2 54 57.4
Rhsim01G0266000 Rhododendron simsii HOM05D004750 ORTHO05D006207 2.5e-08 62.8 54 55.6
CSS0022255 Camellia sinensis var. sinensis HOM05D004750 ORTHO05D006207 3.3e-08 62.4 54 57.4
TWI18G0451 Tripterygium wilfordii HOM05D004750 ORTHO05D006207 3.3e-08 62.4 54 55.6
vmacro14850 Vaccinium macrocarpon HOM05D004750 ORTHO05D006207 3.3e-08 62.4 51 58.8
FAN27G2220 Fragaria x ananassa HOM05D004750 ORTHO05D006207 4.3e-08 62.0 51 56.9
Hma1.2p1_0273F.1_g109920 Hydrangea macrophylla HOM05D004750 ORTHO05D006207 5.7e-08 61.6 86 43.0
Peaxi162Scf01530g00029 Petunia axillaris HOM05D004750 ORTHO05D006207 5.7e-08 61.6 51 52.9
Atru.chr5.1643 Acer truncatum HOM05D004750 ORTHO05D006207 7.4e-08 61.2 54 55.6
Duzib133G0290 Durio zibethinus HOM05D004750 ORTHO05D006207 7.4e-08 61.2 54 57.4
Prupe.8G227200 Prunus persica HOM05D004750 ORTHO05D006207 7.4e-08 61.2 68 51.5
Lj1A64T37 Lonicera japonica HOM05D004750 ORTHO05D006207 9.7e-08 60.8 62 53.2
GSVIVG01028293001 Vitis vinifera HOM05D004750 ORTHO05D006207 9.7e-08 60.8 84 47.6
Manes.12G030800 Manihot esculenta HOM05D004750 ORTHO05D006207 1.3e-07 60.5 71 42.3
Cpa.g.sc50.41 Carica papaya HOM05D004750 ORTHO05D006207 1.7e-07 60.1 52 53.8
CiPaw.03G261600 Carya illinoinensis HOM05D004750 ORTHO05D006207 1.7e-07 60.1 89 40.4
Ca_09693_v3 Cicer arietinum L. HOM05D004750 ORTHO05D006207 1.7e-07 60.1 51 54.9
COL.COLO4_05604 Corchorus olitorius HOM05D004750 ORTHO05D006207 1.7e-07 60.1 51 56.9
TPR.G3576 Trifolium pratense HOM05D004750 ORTHO05D006207 2.2e-07 59.7 52 51.9
DCAR_002681 Daucus carota HOM05D004750 ORTHO05D006207 2.8e-07 59.3 49 55.1
Duzib211G0524 Durio zibethinus HOM05D004750 ORTHO05D006207 2.8e-07 59.3 51 58.8
Ciclev10019537m.g Citrus clementina HOM05D004750 ORTHO05D006207 3.7e-07 58.9 44 72.7
Lalb_Chr06g0162481 Lupinus albus HOM05D004750 ORTHO05D006207 3.7e-07 58.9 75 44.0
MD05G1200600 Malus domestica HOM05D004750 ORTHO05D006207 3.7e-07 58.9 86 44.2
Nn3g19610 Nelumbo nucifera HOM05D004750 ORTHO05D006207 3.7e-07 58.9 70 48.6
THA.LOC104802241 Tarenaya hassleriana HOM05D004750 ORTHO05D006207 4.8e-07 58.5 54 53.7
arahy.Tifrunner.gnm1.ann1.58RJ2S Arachis hypogaea HOM05D004750 ORTHO05D006207 6.3e-07 58.2 51 49.0
arahy.Tifrunner.gnm1.ann1.I9TYEM Arachis hypogaea HOM05D004750 ORTHO05D006207 6.3e-07 58.2 51 49.0
AUR62011896 Chenopodium quinoa HOM05D004750 ORTHO05D006207 6.3e-07 58.2 55 54.5
Sabra05G0170600 Salix brachista HOM05D004750 ORTHO05D006207 6.3e-07 58.2 54 46.3
Sc17g0000770 Simmondsia chinensis HOM05D004750 ORTHO05D006207 6.3e-07 58.2 55 54.5
CAN.G771.23 Capsicum annuum HOM05D004750 ORTHO05D006207 1.1e-06 57.4 44 72.7
AUR62024737 Chenopodium quinoa HOM05D004750 ORTHO05D006207 1.1e-06 57.4 55 54.5
Thhalv10016471m.g Eutrema salsugineum HOM05D004750 ORTHO05D006207 1.1e-06 57.4 54 50.0
Medtr1g070195 Medicago truncatula HOM05D004750 ORTHO05D006207 1.4e-06 57.0 61 49.2
PGR031G0841 Punica granatum HOM05D004750 ORTHO05D006207 1.4e-06 57.0 51 52.9
Hma1.2p1_0273F.1_g109910 Hydrangea macrophylla HOM05D004750 ORTHO05D006207 1.8e-06 56.6 44 70.5
Dinv34600 Davidia involucrata HOM05D004750 ORTHO05D006207 2.4e-06 56.2 44 68.2
Potri.005G222000 Populus trichocarpa HOM05D004750 ORTHO05D006207 2.4e-06 56.2 54 44.4
Hund09589 Selenicereus undatus HOM05D004750 ORTHO05D006207 2.4e-06 56.2 70 45.7
PGSC0003DMG400020145 Solanum tuberosum HOM05D004750 ORTHO05D006207 2.4e-06 56.2 44 70.5
A05p02980 Brassica napus HOM05D004750 ORTHO05D006207 3.1e-06 55.8 54 50.0
C04p03600 Brassica napus HOM05D004750 ORTHO05D006207 3.1e-06 55.8 56 51.8
BolC4t21995H Brassica oleracea HOM05D004750 ORTHO05D006207 3.1e-06 55.8 56 51.8
BraA05t19288Z Brassica rapa HOM05D004750 ORTHO05D006207 3.1e-06 55.8 54 50.0
HanXRQChr01g0014351 Helianthus annuus HOM05D004750 ORTHO05D006207 3.1e-06 55.8 51 54.9
Solyc06g083920.4 Solanum lycopersicum HOM05D004750 ORTHO05D006207 3.1e-06 55.8 44 68.2
Sopen06g035320 Solanum pennellii HOM05D004750 ORTHO05D006207 3.1e-06 55.8 44 68.2
Aqoxy2G03613 Aquilegia oxysepala HOM05D004750 ORTHO05D006207 4.1e-06 55.5 51 52.9
CDE05G0417 Ceratophyllum demersum HOM05D004750 ORTHO05D006207 4.1e-06 55.5 59 55.9
MBI18_g37354_MAGBIO Magnolia biondii HOM05D004750 ORTHO05D006207 4.1e-06 55.5 52 53.8
AL4G40900 Arabidopsis lyrata HOM05D004750 ORTHO05D006207 5.3e-06 55.1 54 48.1
Phvul.007G194900 Phaseolus vulgaris HOM05D004750 ORTHO05D006207 5.3e-06 55.1 44 70.5
Sp4g24590 Schrenkiella parvula HOM05D004750 ORTHO05D006207 5.3e-06 55.1 54 48.1
VMungo0720G0257 Vigna mungo HOM05D004750 ORTHO05D006207 5.3e-06 55.1 44 70.5
Carub.0004s2484 Capsella rubella HOM05D004750 ORTHO05D006207 6.9e-06 54.7 54 48.1
QL10p040832 Quercus lobata HOM05D004750 ORTHO05D006207 6.9e-06 54.7 44 70.5
Aa31LG1G24270 Aethionema arabicum HOM05D004750 ORTHO05D006207 9.1e-06 54.3 44 63.6
Ah.11g049820 Amaranthus hybridus HOM05D004750 ORTHO05D006207 9.1e-06 54.3 44 65.9
AT2G42450 Arabidopsis thaliana HOM05D004750 ORTHO05D006207 9.1e-06 54.3 44 63.6
CARHR137490 Cardamine hirsuta HOM05D004750 ORTHO05D006207 9.1e-06 54.3 44 63.6


User provided reference genes

Program Settings