Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold98G29336 Striga asiatica HOM05D012549 ORTHO05D013546 0.0e+00 1117.8 553 100.0
SGA_v2.0_scaffold98G29332 Striga asiatica HOM05D012549 ORTHO05D013546 7.6e-271 936.8 481 94.4
SGA_v2.0_scaffold80G25794 Striga asiatica HOM05D012549 ORTHO05D013546 6.9e-155 551.6 483 60.0
SGA_v2.0_scaffold80G25772 Striga asiatica HOM05D012549 ORTHO05D013546 2.0e-154 550.1 505 58.2
SGA_v2.0_scaffold199G41212 Striga asiatica HOM05D012549 ORTHO05D013546 1.0e-153 547.7 500 58.4
SGA_v2.0_scaffold80G25855 Striga asiatica HOM05D012549 ORTHO05D013546 4.8e-148 528.9 499 57.1
SGA_v2.0_scaffold98G29327 Striga asiatica HOM05D012549 ORTHO05D013546 6.9e-147 525.0 350 75.1
SGA_v2.0_scaffold94G28510 Striga asiatica HOM05D012549 ORTHO05D013546 1.3e-145 520.8 446 62.3
SGA_v2.0_scaffold80G25779 Striga asiatica HOM05D012549 ORTHO05D013546 5.4e-91 339.3 307 58.6
SGA_v2.0_scaffold386G50500 Striga asiatica HOM05D023019 ORTHO05D013546 2.1e-42 177.9 452 31.6
SGA_v2.0_scaffold386G50502 Striga asiatica HOM05D023019 ORTHO05D013546 2.1e-42 177.9 452 31.6
SGA_v2.0_scaffold56G20030 Striga asiatica HOM05D023019 ORTHO05D013546 1.5e-32 145.2 450 29.3
SGA_v2.0_scaffold189G40374 Striga asiatica HOM05D023019 ORTHO05D013546 1.4e-30 138.7 346 30.3
CANSAT21G1526 Cannabis sativa HOM05D012549 ORTHO05D013546 1.5e-29 135.2 430 27.4
CANSAT78G0001 Cannabis sativa HOM05D012549 ORTHO05D013546 4.6e-26 123.6 451 26.4
QL08p043319 Quercus lobata HOM05D001729 ORTHO05D001155 6.7e-25 119.8 443 25.7
CANSAT78G1812 Cannabis sativa HOM05D012549 ORTHO05D013546 3.7e-23 114.0 441 26.1
QL07p036156 Quercus lobata HOM05D001729 ORTHO05D001155 2.9e-20 104.4 453 28.0
CANSAT54G0181 Cannabis sativa HOM05D023019 ORTHO05D013546 1.4e-19 102.1 417 26.4
AUR62006002 Chenopodium quinoa HOM05D001729 ORTHO05D001155 3.2e-19 100.9 435 25.1
AUR62035624 Chenopodium quinoa HOM05D001729 ORTHO05D001155 3.2e-19 100.9 441 24.7
QL08p043324 Quercus lobata HOM05D001729 ORTHO05D001155 7.2e-19 99.8 444 26.1
CANSAT21G0540 Cannabis sativa HOM05D012549 ORTHO05D001155 1.6e-18 98.6 418 25.8
Potri.009G132400 Populus trichocarpa HOM05D001729 ORTHO05D001155 7.9e-18 96.3 431 25.3
Atru.chr9.1050 Acer truncatum HOM05D006807 ORTHO05D008528 3.9e-17 94.0 436 26.6
Sc19g0001870 Simmondsia chinensis HOM05D001729 ORTHO05D001155 2.0e-16 91.7 434 24.7
Sc19g0000590 Simmondsia chinensis HOM05D001729 ORTHO05D001155 4.4e-16 90.5 451 23.3
QL07p019801 Quercus lobata HOM05D001729 ORTHO05D001155 5.7e-16 90.1 461 24.3
QL07p036110 Quercus lobata HOM05D001729 ORTHO05D001155 5.7e-16 90.1 445 25.4
AUR62035623 Chenopodium quinoa HOM05D001729 ORTHO05D001155 9.7e-16 89.4 426 23.7
AUR62006003 Chenopodium quinoa HOM05D001729 ORTHO05D001155 1.3e-15 89.0 435 23.0
PGSC0003DMG400005639 Solanum tuberosum HOM05D001729 ORTHO05D001155 1.3e-15 89.0 435 25.5
QL01p006048 Quercus lobata HOM05D001729 ORTHO05D001155 1.7e-15 88.6 470 24.7
Ah.07g204710 Amaranthus hybridus HOM05D001729 ORTHO05D001155 8.2e-15 86.3 416 22.8
Sabra09G0102700 Salix brachista HOM05D001729 ORTHO05D001155 1.1e-14 85.9 383 26.4
FAN24G2236 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.4e-14 85.5 435 26.2
PGSC0003DMG400005638 Solanum tuberosum HOM05D001729 ORTHO05D001155 1.4e-14 85.5 390 24.6
QL07p036320 Quercus lobata HOM05D001729 ORTHO05D001155 3.1e-14 84.3 457 24.5
FAN09G2508 Fragaria x ananassa HOM05D001729 ORTHO05D001155 5.3e-14 83.6 355 25.1
Lj2A1107G68 Lonicera japonica HOM05D001729 ORTHO05D001155 9.1e-14 82.8 439 24.8
PSO675G7142 Papaver somniferum HOM05D008326 ORTHO05D001155 1.2e-13 82.4 449 24.7
QL05p052800 Quercus lobata HOM05D001729 ORTHO05D001155 2.0e-13 81.6 452 23.2
DCAR_004585 Daucus carota HOM05D001729 ORTHO05D001155 3.4e-13 80.9 437 24.5
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 5.9e-13 80.1 459 23.3
QL05p014501 Quercus lobata HOM05D001729 ORTHO05D001155 1.0e-12 79.3 424 22.6
AUR62037325 Chenopodium quinoa HOM05D001808 ORTHO05D021205 2.9e-12 77.8 442 26.7
AUR62043907 Chenopodium quinoa HOM05D021952 ORTHO05D021205 2.9e-12 77.8 442 26.7
Prupe.3G059500 Prunus persica HOM05D001729 ORTHO05D001155 2.9e-12 77.8 469 24.3
QL07p036134 Quercus lobata HOM05D001729 ORTHO05D001155 2.9e-12 77.8 430 25.3
AUR62035201 Chenopodium quinoa HOM05D021952 ORTHO05D021205 5.0e-12 77.0 442 26.7
FAN14G0866 Fragaria x ananassa HOM05D001729 ORTHO05D001155 6.5e-12 76.6 457 22.8
FAN11G0139 Fragaria x ananassa HOM05D001729 ORTHO05D001155 8.5e-12 76.3 418 24.4
MD05G1244200 Malus domestica HOM05D001729 ORTHO05D001155 8.5e-12 76.3 459 23.3
RcHm_v2.0_Chr3g0450211 Rosa chinensis HOM05D001729 ORTHO05D001155 8.5e-12 76.3 305 26.9
RcHm_v2.0_Chr6g0275871 Rosa chinensis HOM05D001729 ORTHO05D001155 3.2e-11 74.3 466 23.2
Lj2A946T25 Lonicera japonica HOM05D001729 ORTHO05D001155 4.2e-11 73.9 471 24.0
FAN05G1447 Fragaria x ananassa HOM05D001729 ORTHO05D001155 5.5e-11 73.6 443 22.6
FAN19G1733 Fragaria x ananassa HOM05D001729 ORTHO05D001155 5.5e-11 73.6 486 25.3
FAN05G4264 Fragaria x ananassa HOM05D001526 ORTHO05D001417 9.4e-11 72.8 328 24.4
Rhsim03G0249000 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.2e-10 72.4 254 28.3
FvH4_6g03221 Fragaria vesca HOM05D001729 ORTHO05D001155 1.6e-10 72.0 332 26.5
FvH4_6g02171 Fragaria vesca HOM05D001729 ORTHO05D001155 2.1e-10 71.6 259 25.9
PSO161G0051 Papaver somniferum HOM05D008326 ORTHO05D001155 3.6e-10 70.9 297 24.9
FAN09G4239 Fragaria x ananassa HOM05D001729 ORTHO05D001155 4.7e-10 70.5 332 26.5
FAN12G2239 Fragaria x ananassa HOM05D001729 ORTHO05D001155 4.7e-10 70.5 462 21.6
FvH4_6g45291 Fragaria vesca HOM05D001729 ORTHO05D001155 7.9e-10 69.7 455 22.4
FAN02G0048 Fragaria x ananassa HOM05D001729 ORTHO05D001155 7.9e-10 69.7 450 24.0
FAN14G0421 Fragaria x ananassa HOM05D001729 ORTHO05D001155 7.9e-10 69.7 455 22.4
Prupe.5G068800 Prunus persica HOM05D001729 ORTHO05D001155 1.4e-09 68.9 419 21.7
CANSAT80G0415 Cannabis sativa HOM05D001729 ORTHO05D001155 3.9e-09 67.4 473 22.4
FAN16G0429 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.9e-09 67.4 440 23.4
Potri.011G004800 Populus trichocarpa HOM05D001729 ORTHO05D001155 8.8e-09 66.2 417 23.7
Sabra11G0003700 Salix brachista HOM05D001729 ORTHO05D001155 8.8e-09 66.2 386 23.3
FvH4_6g46240 Fragaria vesca HOM05D001729 ORTHO05D001155 1.5e-08 65.5 457 21.9
Prupe.5G070600 Prunus persica HOM05D001729 ORTHO05D001155 1.5e-08 65.5 344 25.0
QL06p001050 Quercus lobata HOM05D001729 ORTHO05D001155 1.5e-08 65.5 171 32.7
FvH4_2g30622 Fragaria vesca HOM05D001729 ORTHO05D001155 2.0e-08 65.1 464 23.1
RcHm_v2.0_Chr6g0292091 Rosa chinensis HOM05D001729 ORTHO05D001155 2.6e-08 64.7 260 26.2
FvH4_3g35490 Fragaria vesca HOM05D001729 ORTHO05D001155 3.3e-08 64.3 274 26.6
FvH4_3g44510 Fragaria vesca HOM05D001729 ORTHO05D001155 3.3e-08 64.3 264 26.1
FAN14G3807 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.3e-08 64.3 461 22.6
Glyma.09G075900 Glycine max HOM05D001729 ORTHO05D001155 3.3e-08 64.3 479 23.2
PSO170G0624 Papaver somniferum HOM05D007162 ORTHO05D007631 3.3e-08 64.3 295 25.1
Thecc.03G222100 Theobroma cacao HOM05D001729 ORTHO05D001155 3.3e-08 64.3 148 33.1
FvH4_6g46280 Fragaria vesca HOM05D001729 ORTHO05D001155 4.4e-08 63.9 260 23.8
RcHm_v2.0_Chr6g0276071 Rosa chinensis HOM05D001729 ORTHO05D001155 4.4e-08 63.9 274 24.5
FAN05G0208 Fragaria x ananassa HOM05D001729 ORTHO05D001155 5.7e-08 63.5 324 26.9
FAN06G0177 Fragaria x ananassa HOM05D001729 ORTHO05D001155 5.7e-08 63.5 470 23.2
FAN16G2506 Fragaria x ananassa HOM05D001729 ORTHO05D001155 5.7e-08 63.5 264 25.0
Migut.G00030 Erythranthe guttata HOM05D007162 ORTHO05D007631 7.4e-08 63.2 287 26.8
PSO210G1832 Papaver somniferum HOM05D008326 ORTHO05D001155 9.7e-08 62.8 287 23.7
AUR62016246 Chenopodium quinoa HOM05D007162 ORTHO05D007631 1.3e-07 62.4 273 26.4
FAN24G2446 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.7e-07 62.0 343 26.8
Thecc.04G306200 Theobroma cacao HOM05D007162 ORTHO05D007631 1.7e-07 62.0 274 27.4
Ah.10g030210 Amaranthus hybridus HOM05D021952 ORTHO05D021205 2.2e-07 61.6 269 23.4
FAN02G2194 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.2e-07 61.6 348 23.0
FAN11G2672 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.2e-07 61.6 261 23.0
FAN11G1727 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.8e-07 61.2 253 26.1
FvH4_4g16921 Fragaria vesca HOM05D001729 ORTHO05D001155 3.7e-07 60.8 322 22.7
FAN09G3613 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.7e-07 60.8 177 30.5
PSO333G0039 Papaver somniferum HOM05D008326 ORTHO05D001155 4.8e-07 60.5 294 24.5
RcHm_v2.0_Chr2g0151111 Rosa chinensis HOM05D001729 ORTHO05D001155 4.8e-07 60.5 278 25.2
RcHm_v2.0_Chr6g0264241 Rosa chinensis HOM05D000664 ORTHO05D000491 4.8e-07 60.5 254 27.6
Dinv35017 Davidia involucrata HOM05D008898 ORTHO05D001155 6.3e-07 60.1 404 24.3
Migut.G00033 Erythranthe guttata HOM05D007162 ORTHO05D007631 6.3e-07 60.1 287 26.8
FAN12G2308 Fragaria x ananassa HOM05D001729 ORTHO05D001155 6.3e-07 60.1 321 22.4
FAN24G2684 Fragaria x ananassa HOM05D001729 ORTHO05D001155 6.3e-07 60.1 455 23.3
Prupe.3G265100 Prunus persica HOM05D001729 ORTHO05D001155 6.3e-07 60.1 264 25.4
RcHm_v2.0_Chr2g0123691 Rosa chinensis HOM05D001729 ORTHO05D001155 6.3e-07 60.1 276 25.0
Haze_00858 Corylus avellana HOM05D007162 ORTHO05D007631 8.2e-07 59.7 259 26.3
FvH4_6g39371 Fragaria vesca HOM05D001729 ORTHO05D001155 8.2e-07 59.7 277 27.4
FAN09G2757 Fragaria x ananassa HOM05D001729 ORTHO05D001155 8.2e-07 59.7 277 27.4
FAN14G1727 Fragaria x ananassa HOM05D001729 ORTHO05D001155 8.2e-07 59.7 277 27.4
FAN20G0258 Fragaria x ananassa HOM05D001729 ORTHO05D001155 8.2e-07 59.7 446 22.0
QL05p008212 Quercus lobata HOM05D001729 ORTHO05D001155 8.2e-07 59.7 277 22.7
Rhsim04G0242300 Rhododendron simsii HOM05D007162 ORTHO05D007631 8.2e-07 59.7 291 28.2
vmacro07965 Vaccinium macrocarpon HOM05D007162 ORTHO05D007631 8.2e-07 59.7 291 25.8
Ciclev10005014m.g Citrus clementina HOM05D007162 ORTHO05D007631 1.4e-06 58.9 248 27.0
Rhsim01G0015000 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.4e-06 58.9 180 29.4
FvH4_3g30171 Fragaria vesca HOM05D001729 ORTHO05D001155 1.8e-06 58.5 265 23.8
FvH4_6g01541 Fragaria vesca HOM05D001729 ORTHO05D001155 1.8e-06 58.5 455 21.1
FAN16G0249 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.8e-06 58.5 254 24.8
PSO017G4273 Papaver somniferum HOM05D000789 ORTHO05D001155 1.8e-06 58.5 254 23.6
BcaB07g34165 Brassica carinata HOM05D007162 ORTHO05D007631 3.1e-06 57.8 273 24.5
AUR62017742 Chenopodium quinoa HOM05D000007 ORTHO05D000039 3.1e-06 57.8 354 23.4
Prupe.1G510700 Prunus persica HOM05D001729 ORTHO05D001155 3.1e-06 57.8 262 24.4
Prupe.6G075500 Prunus persica HOM05D001729 ORTHO05D001155 4.1e-06 57.4 267 24.7
BcaB08g36410 Brassica carinata HOM05D002743 ORTHO05D002895 5.3e-06 57.0 386 21.8
FAN14G5781 Fragaria x ananassa HOM05D001729 ORTHO05D001155 5.3e-06 57.0 345 22.0
Rhsim01G0013300 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.3e-06 57.0 282 27.3
AUR62027174 Chenopodium quinoa HOM05D001729 ORTHO05D001155 7.0e-06 56.6 263 23.2
Manes.14G038100 Manihot esculenta HOM05D000664 ORTHO05D000491 7.0e-06 56.6 249 25.7
Rhsim01G0014800 Rhododendron simsii HOM05D000664 ORTHO05D000491 7.0e-06 56.6 180 28.9
RcHm_v2.0_Chr2g0164721 Rosa chinensis HOM05D001729 ORTHO05D001155 7.0e-06 56.6 287 23.0
Aqoxy5G01770 Aquilegia oxysepala HOM05D000664 ORTHO05D009863 9.1e-06 56.2 250 23.6
FvH4_3g44471 Fragaria vesca HOM05D001729 ORTHO05D001155 9.1e-06 56.2 254 24.4
FvH4_4g18120 Fragaria vesca HOM05D001729 ORTHO05D001155 9.1e-06 56.2 321 23.1
Psat1g162520 Pisum sativum HOM05D007162 ORTHO05D007631 9.1e-06 56.2 251 27.9


User provided reference genes

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