Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 2.4e-81 305.4 154 100.0
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 7.5e-51 204.1 161 70.8
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 7.5e-51 204.1 161 70.8
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 2.1e-45 186.0 152 65.8
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 6.2e-45 184.5 161 62.7
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 8.1e-37 157.5 160 56.2
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.4e-36 156.8 154 57.8
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.3e-36 156.0 151 56.3
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 8.9e-36 154.1 154 56.5
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 2.0e-35 152.9 154 54.5
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 2.0e-35 152.9 154 53.2
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 5.8e-35 151.4 160 50.6
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 9.9e-35 150.6 160 50.0
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 1.3e-34 150.2 173 50.9
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 3.7e-34 148.7 154 51.3
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 8.4e-34 147.5 151 55.0
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.4e-33 146.7 144 55.6
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 4.1e-33 145.2 144 56.2
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 5.4e-33 144.8 141 56.7
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.2e-32 143.7 158 50.6
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.2e-32 143.7 158 50.6
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 2.1e-32 142.9 158 52.5
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 2.1e-32 142.9 137 54.7
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.7e-32 142.5 158 50.6
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 6.0e-32 141.4 151 53.0
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.3e-31 139.4 157 51.0
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 2.3e-31 139.4 148 52.0
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 5.1e-31 138.3 127 57.5
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.5e-30 136.7 144 52.1
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 2.5e-30 136.0 123 56.9
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 2.5e-30 136.0 157 50.3
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 5.6e-30 134.8 153 47.7
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.2e-29 133.7 156 50.0
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 1.6e-29 133.3 145 55.9
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 2.1e-29 132.9 143 49.0
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 2.8e-29 132.5 127 54.3
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 4.7e-29 131.7 134 57.5
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 6.2e-29 131.3 129 60.5
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 8.1e-29 131.0 137 54.0
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 1.8e-28 129.8 127 56.7
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.1e-28 129.0 143 51.0
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 4.0e-28 128.6 151 49.0
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 6.8e-28 127.9 145 53.1
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 8.9e-28 127.5 161 47.8
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 8.9e-28 127.5 123 51.2
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 1.2e-27 127.1 138 52.9
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 1.5e-27 126.7 149 47.7
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 2.0e-27 126.3 164 48.2
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 2.6e-27 125.9 160 45.0
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 2.6e-27 125.9 149 50.3
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 3.4e-27 125.6 141 51.1
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 5.8e-27 124.8 159 48.4
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 7.6e-27 124.4 159 45.3
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 7.6e-27 124.4 156 46.2
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.3e-26 123.6 151 47.0
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.8e-26 122.1 146 50.7
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 3.8e-26 122.1 160 48.1
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 3.8e-26 122.1 160 48.1
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 3.8e-26 122.1 144 50.7
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 4.9e-26 121.7 154 44.8
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 8.4e-26 120.9 156 43.6
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.4e-25 120.2 142 51.4
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 7.1e-25 117.9 138 52.9
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 7.1e-25 117.9 129 53.5
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 9.3e-25 117.5 146 49.3
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 9.3e-25 117.5 146 48.6
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 3.5e-24 115.5 135 51.1
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 3.5e-24 115.5 139 47.5
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 6.0e-24 114.8 92 57.6
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 7.8e-24 114.4 135 45.2
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 1.7e-23 113.2 120 47.5
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.7e-23 113.2 124 47.6
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 1.7e-23 113.2 144 45.1
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 3.0e-23 112.5 128 46.9
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 3.9e-23 112.1 82 62.2
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 3.9e-23 112.1 148 46.6
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.1e-22 110.5 142 47.2
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 1.1e-22 110.5 129 48.1
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 4.3e-22 108.6 142 45.8
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 7.3e-22 107.8 139 46.0
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 9.6e-22 107.5 142 45.1
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 9.6e-22 107.5 145 47.6
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 1.3e-21 107.1 126 51.6
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.3e-21 107.1 153 43.1
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.3e-21 107.1 141 44.7
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 1.6e-21 106.7 145 46.2
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.1e-21 106.3 142 42.3
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 2.1e-21 106.3 140 43.6
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.8e-21 105.9 112 53.6
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 3.6e-21 105.5 146 45.9
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 4.8e-21 105.1 146 45.2
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 4.8e-21 105.1 141 47.5
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 1.1e-20 104.0 139 48.2
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 1.4e-20 103.6 140 47.1
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 1.4e-20 103.6 140 47.1
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.1e-20 102.4 141 46.1
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 3.1e-20 102.4 145 45.5
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 4.0e-20 102.1 139 47.5
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 5.3e-20 101.7 139 47.5
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 6.9e-20 101.3 142 41.5
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 1.5e-19 100.1 150 44.0
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 1.5e-19 100.1 135 44.4
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 3.4e-19 99.0 109 49.5
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 3.4e-19 99.0 143 45.5
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 5.8e-19 98.2 145 48.3
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 7.6e-19 97.8 116 43.1
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.7e-18 96.7 150 40.0
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 4.9e-18 95.1 146 39.7
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.4e-17 93.6 103 51.5
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 1.9e-17 93.2 129 46.5
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 2.4e-17 92.8 145 42.8
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 3.2e-17 92.4 114 47.4
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 4.2e-17 92.0 92 46.7
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.2e-16 90.5 136 47.1
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 7.9e-16 87.8 122 43.4
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.9e-14 83.2 134 43.3
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 1.9e-14 83.2 89 43.8
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 4.3e-14 82.0 123 43.1
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 4.3e-14 82.0 148 39.2
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 1.3e-13 80.5 129 39.5
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 3.6e-13 79.0 120 42.5
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 8.1e-13 77.8 125 42.4
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 1.4e-12 77.0 127 40.9
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 1.8e-12 76.6 147 39.5
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 4.0e-12 75.5 127 40.2
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 4.0e-12 75.5 127 40.2
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 4.0e-12 75.5 127 40.2
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 4.0e-12 75.5 123 39.8
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 2.6e-11 72.8 127 39.4
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.3e-10 70.5 119 41.2
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 1.3e-10 70.5 116 41.4
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.7e-10 70.1 122 37.7
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.4e-10 68.2 51 58.8
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 4.2e-09 65.5 52 53.8
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 5.5e-09 65.1 92 43.5
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 7.9e-08 61.2 62 50.0
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.0e-07 60.8 116 40.5
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 1.5e-06 57.0 57 49.1
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 5.6e-06 55.1 146 31.5


User provided reference genes

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