Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold98G29268 Striga asiatica HOM05D000361 ORTHO05D007482 1.2e-156 556.6 304 100.0
SGA_v2.0_scaffold258G45751 Striga asiatica HOM05D000361 ORTHO05D007482 2.9e-115 419.1 320 76.2
SGA_v2.0_scaffold98G29273 Striga asiatica HOM05D000361 ORTHO05D007482 1.6e-113 413.3 285 84.6
SGA_v2.0_scaffold258G45762 Striga asiatica HOM05D000361 ORTHO05D007482 1.8e-109 399.8 296 79.4
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.8e-104 383.3 285 75.8
SGA_v2.0_scaffold98G29270 Striga asiatica HOM05D000361 ORTHO05D007482 3.6e-97 359.0 283 74.2
MSTRG.8063 Avicennia marina HOM05D000361 ORTHO05D007482 4.0e-88 328.9 306 64.7
Migut.K01134 Erythranthe guttata HOM05D000361 ORTHO05D007482 7.5e-87 324.7 309 61.8
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 1.4e-80 303.9 284 62.0
Peaxi162Scf01167g00115 Petunia axillaris HOM05D000361 ORTHO05D007482 7.6e-79 298.1 305 58.7
Oeu010265.1 Olea europaea HOM05D000361 ORTHO05D007482 9.9e-79 297.7 281 63.3
Sopen11g017320 Solanum pennellii HOM05D000361 ORTHO05D007482 6.4e-78 295.0 284 60.9
PGSC0003DMG400002190 Solanum tuberosum HOM05D000361 ORTHO05D007482 2.4e-77 293.1 284 60.6
SalBow2G1437 Salvia bowleyana HOM05D000361 ORTHO05D007482 5.4e-77 292.0 309 58.6
Dinv06935 Davidia involucrata HOM05D000361 ORTHO05D007482 2.7e-76 289.7 312 56.4
Nitab4.5_0005286g0020 Nicotiana tabacum HOM05D000361 ORTHO05D007482 3.5e-76 289.3 310 56.5
Hma1.2p1_0738F.1_g210960 Hydrangea macrophylla HOM05D000361 ORTHO05D007482 4.6e-76 288.9 287 59.2
Cfa009472 Carpinus fangiana HOM05D002839 ORTHO05D007482 5.1e-75 285.4 300 58.0
CAN.G624.12 Capsicum annuum HOM05D000361 ORTHO05D007482 5.6e-74 282.0 286 59.8
Manes.08G099300 Manihot esculenta HOM05D000361 ORTHO05D007482 1.6e-73 280.4 287 59.6
Nn4g22072 Nelumbo nucifera HOM05D000361 ORTHO05D007482 8.9e-72 274.6 288 58.3
Cc11_g14860 Coffea canephora HOM05D000361 ORTHO05D007482 1.5e-71 273.9 300 59.0
CiPaw.06G111400 Carya illinoinensis HOM05D000361 ORTHO05D007482 2.6e-71 273.1 287 56.8
Aqoxy5G02980 Aquilegia oxysepala HOM05D000361 ORTHO05D007482 3.4e-71 272.7 287 58.5
DCAR_026439 Daucus carota HOM05D000361 ORTHO05D007482 3.4e-71 272.7 321 54.2
Ciclev10027769m.g Citrus clementina HOM05D000361 ORTHO05D007482 7.6e-71 271.6 280 57.5
Duzib160G0854 Durio zibethinus HOM05D000361 ORTHO05D007482 9.9e-71 271.2 285 57.5
Lsat_1_v5_gn_3_33321 Lactuca sativa HOM05D000361 ORTHO05D007482 1.3e-70 270.8 287 58.2
MBI11_g23193_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D007482 3.8e-70 269.2 288 58.3
Thecc.01G239700 Theobroma cacao HOM05D000361 ORTHO05D007482 6.4e-70 268.5 290 56.9
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 1.9e-69 266.9 307 55.0
GSVIVG01001119001 Vitis vinifera HOM05D000361 ORTHO05D007482 4.2e-69 265.8 309 56.0
Atru.chr12.1475 Acer truncatum HOM05D000361 ORTHO05D007482 5.4e-69 265.4 301 53.2
Gorai.005G120400 Gossypium raimondii HOM05D000361 ORTHO05D007482 7.1e-69 265.0 285 56.1
Hund06727 Selenicereus undatus HOM05D000361 ORTHO05D007482 1.2e-68 264.2 302 55.0
TAR629G3206 Trochodendron aralioides HOM05D000361 ORTHO05D007482 1.2e-68 264.2 289 58.5
ECA246G5349 Erigeron canadensis HOM05D000361 ORTHO05D007482 4.6e-68 262.3 315 54.6
Gohir.A03G086700 Gossypium hirsutum HOM05D000361 ORTHO05D007482 7.8e-68 261.5 285 55.8
Haze_12528 Corylus avellana HOM05D000361 ORTHO05D007482 1.3e-67 260.8 351 49.6
Potri.001G070500 Populus trichocarpa HOM05D000361 ORTHO05D007482 2.3e-67 260.0 290 55.5
Gohir.A09G002700 Gossypium hirsutum HOM05D000361 ORTHO05D007482 3.0e-67 259.6 294 54.4
RcHm_v2.0_Chr4g0428411 Rosa chinensis HOM05D000361 ORTHO05D007482 3.9e-67 259.2 315 51.4
Eucgr.B03569 Eucalyptus grandis HOM05D000361 ORTHO05D007482 1.5e-66 257.3 260 58.1
Sabra01G0049500 Salix brachista HOM05D000361 ORTHO05D007482 1.9e-66 256.9 292 54.8
Sc10g0009070 Simmondsia chinensis HOM05D000361 ORTHO05D007482 2.5e-66 256.5 311 52.7
Solyc11g040120.3 Solanum lycopersicum HOM05D000361 ORTHO05D007482 3.3e-66 256.1 221 67.0
CANSAT21G0886 Cannabis sativa HOM05D000361 ORTHO05D007482 2.1e-65 253.4 284 54.6
Ah.14g085960 Amaranthus hybridus HOM05D000361 ORTHO05D007482 2.8e-65 253.1 306 51.3
Gorai.006G003100 Gossypium raimondii HOM05D000361 ORTHO05D007482 2.8e-65 253.1 289 53.6
Gohir.D09G002500 Gossypium hirsutum HOM05D000361 ORTHO05D007482 4.8e-65 252.3 289 53.6
Hma1.2p1_0738F.1_g210950 Hydrangea macrophylla HOM05D000361 ORTHO05D007482 4.8e-65 252.3 300 53.0
vmacro15518 Vaccinium macrocarpon HOM05D000361 ORTHO05D007482 4.8e-65 252.3 286 57.0
Psat0s4013g0080 Pisum sativum HOM05D000361 ORTHO05D007482 8.1e-65 251.5 282 54.3
CDE05G0767 Ceratophyllum demersum HOM05D000361 ORTHO05D007482 6.9e-64 248.4 300 54.7
FvH4_4g22180 Fragaria vesca HOM05D000361 ORTHO05D007482 6.9e-64 248.4 307 50.2
QL03p048338 Quercus lobata HOM05D000361 ORTHO05D007482 2.6e-63 246.5 308 51.3
TPR.G25402 Trifolium pratense HOM05D000361 ORTHO05D007482 2.6e-63 246.5 281 54.4
Ca_21434_v3 Cicer arietinum L. HOM05D000361 ORTHO05D007482 3.4e-63 246.1 295 53.2
THA.LOC104801409 Tarenaya hassleriana HOM05D000361 ORTHO05D007482 5.8e-63 245.4 300 52.7
Rhsim13G0167000 Rhododendron simsii HOM05D000361 ORTHO05D007482 9.9e-63 244.6 291 55.0
HanXRQChr06g0175361 Helianthus annuus HOM05D000361 ORTHO05D007482 1.3e-62 244.2 280 58.9
Lj3A1078T19 Lonicera japonica HOM05D000361 ORTHO05D007482 2.2e-62 243.4 323 52.0
AUR62034021 Chenopodium quinoa HOM05D000361 ORTHO05D007482 2.9e-62 243.0 307 52.4
Aa31LG3G14210 Aethionema arabicum HOM05D000361 ORTHO05D007482 3.8e-62 242.7 295 50.8
TWI18G1079 Tripterygium wilfordii HOM05D000361 ORTHO05D007482 3.8e-62 242.7 281 53.0
Zm00001eb169610 Zea mays HOM05D000361 ORTHO05D007482 3.8e-62 242.7 308 51.9
CSS0019126 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D007482 4.9e-62 242.3 289 55.7
CSS0044557 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D007482 4.9e-62 242.3 289 55.7
Prupe.1G211500 Prunus persica HOM05D000361 ORTHO05D007482 6.4e-62 241.9 306 52.0
PSO478G1108 Papaver somniferum HOM05D000361 ORTHO05D007482 8.4e-62 241.5 293 56.0
AL1G52570 Arabidopsis lyrata HOM05D000361 ORTHO05D007482 1.9e-61 240.4 298 51.7
Medtr4g122270 Medicago truncatula HOM05D000361 ORTHO05D007482 1.9e-61 240.4 292 52.4
AT1G44900 Arabidopsis thaliana HOM05D000361 ORTHO05D007482 7.1e-61 238.4 299 50.5
Lalb_Chr17g0344991 Lupinus albus HOM05D000361 ORTHO05D007482 7.1e-61 238.4 299 51.8
arahy.Tifrunner.gnm1.ann1.D87PD7 Arachis hypogaea HOM05D000361 ORTHO05D007482 1.6e-60 237.3 297 51.9
Carub.0001s3540 Capsella rubella HOM05D000361 ORTHO05D007482 1.6e-60 237.3 298 54.7
Cpa.g.sc1761.2 Carica papaya HOM05D000361 ORTHO05D007482 2.7e-60 236.5 287 51.9
arahy.Tifrunner.gnm1.ann1.WNQC8Q Arachis hypogaea HOM05D000361 ORTHO05D007482 1.0e-59 234.6 297 52.5
Actinidia30574 Actinidia chinensis HOM05D000361 ORTHO05D007482 3.0e-59 233.0 287 58.2
Glyma.07G238400 Glycine max HOM05D000361 ORTHO05D007482 3.9e-59 232.6 280 52.1
CARHR036120 Cardamine hirsuta HOM05D000361 ORTHO05D007482 3.3e-58 229.6 298 48.3
PSO017G0122 Papaver somniferum HOM05D000361 ORTHO05D007482 2.1e-57 226.9 293 57.0
BcaB07g33912 Brassica carinata HOM05D000361 ORTHO05D007482 3.6e-57 226.1 296 49.0
BcaC07g37281 Brassica carinata HOM05D000361 ORTHO05D007482 4.8e-57 225.7 273 53.1
C08p07110 Brassica napus HOM05D000361 ORTHO05D007482 4.8e-57 225.7 273 53.1
BolC8t47556H Brassica oleracea HOM05D000361 ORTHO05D007482 4.8e-57 225.7 273 53.1
COL.COLO4_36324 Corchorus olitorius HOM05D000361 ORTHO05D007482 4.8e-57 225.7 284 51.1
Phvul.003G116100 Phaseolus vulgaris HOM05D000361 ORTHO05D007482 4.8e-57 225.7 277 51.6
C06p01030 Brassica napus HOM05D000361 ORTHO05D007482 1.8e-56 223.8 284 49.6
BolC6t35239H Brassica oleracea HOM05D000361 ORTHO05D007482 1.8e-56 223.8 284 49.6
BcaC08g42885 Brassica carinata HOM05D000361 ORTHO05D007482 2.4e-56 223.4 284 49.6
FAN12G2733 Fragaria x ananassa HOM05D000361 ORTHO05D007482 2.4e-56 223.4 386 42.0
A08p06290 Brassica napus HOM05D000361 ORTHO05D007482 3.1e-56 223.0 294 52.0
BraA08t32632Z Brassica rapa HOM05D000361 ORTHO05D007482 3.1e-56 223.0 294 52.0
Glyma.17G035000 Glycine max HOM05D000361 ORTHO05D007482 4.0e-56 222.6 296 48.6
PGR102G2757 Punica granatum HOM05D000361 ORTHO05D007482 4.0e-56 222.6 303 49.2
BcaB04g17580 Brassica carinata HOM05D000361 ORTHO05D007482 5.3e-56 222.2 292 51.0
MD16G1144700 Malus domestica HOM05D000361 ORTHO05D007482 3.4e-55 219.5 308 49.7
ATR0582G147 Amborella trichopoda HOM05D000361 ORTHO05D007482 9.9e-55 218.0 302 49.3
FAN17G1841 Fragaria x ananassa HOM05D000361 ORTHO05D007482 1.7e-54 217.2 298 47.0
Thhalv10011214m.g Eutrema salsugineum HOM05D000361 ORTHO05D007482 2.2e-54 216.9 283 48.8
A10p07200 Brassica napus HOM05D000361 ORTHO05D007482 3.8e-54 216.1 291 50.2
Sp1g33770 Schrenkiella parvula HOM05D000361 ORTHO05D007482 4.9e-54 215.7 297 49.5
ClCG10G013030 Citrullus lanatus HOM05D000361 ORTHO05D007482 1.4e-53 214.2 288 50.7
CsaV3_3G032880 Cucumis sativus L. HOM05D000361 ORTHO05D007482 1.9e-53 213.8 298 48.3
Sed0006329 Sechium edule HOM05D000361 ORTHO05D007482 2.4e-53 213.4 303 48.8
Os11g0484300 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D007482 7.1e-53 211.8 321 47.4
BraSC36t46098Z Brassica rapa HOM05D000361 ORTHO05D007482 1.6e-52 210.7 298 49.7
Lj4g0014568 Lotus japonicus HOM05D000361 ORTHO05D007482 2.3e-51 206.8 276 48.9
MD13G1134100 Malus domestica HOM05D000361 ORTHO05D007482 2.3e-51 206.8 291 48.8
SHI04104 Sapria himalayana HOM05D000361 ORTHO05D007482 2.3e-51 206.8 297 45.5
VMungo1215G2015 Vigna mungo HOM05D000361 ORTHO05D007482 8.1e-49 198.4 274 47.1
EL10Ac8g19503 Beta vulgaris HOM05D000361 ORTHO05D007482 9.0e-48 194.9 285 47.4
MELO3C026749.2 Cucumis melo HOM05D000361 ORTHO05D007482 8.7e-43 178.3 304 43.8
HPP92_023046 Vanilla planifolia HOM05D000361 ORTHO05D007482 9.6e-42 174.9 190 56.3
HPP92_023097 Vanilla planifolia HOM05D000361 ORTHO05D007482 3.7e-41 172.9 190 55.8
COL.COLO4_21590 Corchorus olitorius HOM05D000361 ORTHO05D029119 5.7e-34 149.1 174 54.6
Psat6g019600 Pisum sativum HOM05D000361 ORTHO05D007482 2.4e-32 143.7 92 73.9
Prupe.8G031700 Prunus persica HOM05D000361 ORTHO05D007482 3.1e-32 143.3 116 67.2
SMO340G0145 Selaginella moellendorffii HOM05D000361 ORTHO05D007482 5.1e-27 125.9 98 61.2
Mapoly0007s0014 Marchantia polymorpha HOM05D000361 ORTHO05D007482 4.8e-25 119.4 292 31.8
AagrBONN_evm.TU.Sc2ySwM_228.1650 Anthoceros agrestis HOM05D000361 ORTHO05D007482 1.8e-24 117.5 274 33.6
Pp3c1_34820 Physcomitrium patens HOM05D000361 ORTHO05D007482 2.4e-24 117.1 288 34.0
COL.COLO4_08826 Corchorus olitorius HOM05D000361 ORTHO05D029119 3.6e-20 103.2 124 54.0
CBR_g30227 Chara braunii HOM05D000019 ORTHO05D000002 8.8e-19 98.6 149 38.9
PRCOL_00001965 Prasinoderma coloniale HOM05D000361 ORTHO05D007482 9.1e-16 88.6 286 29.7
COL.COLO4_24528 Corchorus olitorius HOM05D000361 ORTHO05D029119 3.6e-12 76.6 123 48.0
MBI03_g34068_MAGBIO Magnolia biondii HOM05D005704 ORTHO05D015589 6.7e-11 72.4 131 37.4
AUR62042521 Chenopodium quinoa HOM05D000361 ORTHO05D007482 3.3e-10 70.1 50 72.0
MCO02G357 Micromonas commoda HOM05D000361 ORTHO05D007482 2.2e-09 67.4 95 35.8
Gohir.D02G106100 Gossypium hirsutum HOM05D000361 ORTHO05D007482 8.2e-09 65.5 45 71.1
HanXRQChr03g0075081 Helianthus annuus HOM05D000361 ORTHO05D015589 5.9e-07 59.3 53 64.2
MBI02_g27369_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D015589 6.5e-06 55.8 41 63.4


User provided reference genes

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