Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 1.0e-207 726.5 362 100.0
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 1.8e-132 476.5 398 63.6
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 4.4e-126 455.3 399 60.9
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.2e-107 394.0 397 56.4
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 1.7e-106 390.2 386 55.7
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.2e-104 384.0 397 54.9
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 2.1e-104 383.3 372 56.7
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 8.1e-104 381.3 402 54.7
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 6.8e-103 378.3 417 51.3
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 8.9e-103 377.9 385 53.5
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 2.6e-102 376.3 394 53.3
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 3.4e-102 375.9 381 54.9
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 5.8e-102 375.2 394 53.0
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 4.1e-100 369.0 395 51.9
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 5.4e-100 368.6 393 52.9
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 3.5e-99 365.9 394 50.8
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.3e-98 364.0 377 53.8
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 5.1e-98 362.1 408 50.2
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 6.6e-98 361.7 399 50.9
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 6.6e-98 361.7 402 51.5
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 8.6e-98 361.3 422 49.3
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 4.3e-97 359.0 369 54.7
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 9.6e-97 357.8 386 53.1
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 1.6e-96 357.1 387 50.6
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 3.6e-96 355.9 415 50.6
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 4.7e-96 355.5 415 50.6
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 1.8e-95 353.6 415 50.1
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 3.1e-95 352.8 396 50.5
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 4.0e-95 352.4 396 50.8
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 1.2e-94 350.9 359 54.0
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 1.5e-94 350.5 420 48.3
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.5e-94 350.5 394 49.7
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 4.4e-94 349.0 395 51.4
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 4.4e-94 349.0 391 50.4
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 7.6e-94 348.2 389 49.9
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 2.2e-93 346.7 390 50.3
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 8.4e-93 344.7 398 48.5
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 3.2e-92 342.8 411 48.2
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 1.2e-91 340.9 421 46.8
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 8.7e-90 334.7 399 48.4
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 1.5e-89 334.0 387 49.6
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 9.6e-89 331.3 405 49.6
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 2.1e-88 330.1 405 47.4
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 3.6e-88 329.3 411 48.2
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 4.8e-88 328.9 361 53.5
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.4e-87 327.4 304 55.6
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 4.0e-87 325.9 412 45.1
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 2.0e-86 323.6 407 46.4
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 3.4e-86 322.8 391 48.3
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 4.5e-86 322.4 398 46.2
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 5.8e-86 322.0 418 45.0
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 1.3e-85 320.9 413 44.8
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 1.7e-85 320.5 284 58.1
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 3.2e-84 316.2 370 47.0
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 1.2e-83 314.3 415 45.3
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 6.0e-83 312.0 367 51.2
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 1.3e-82 310.8 394 47.0
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 2.3e-82 310.1 355 48.2
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 3.9e-82 309.3 384 47.4
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 2.5e-81 306.6 377 47.2
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 2.5e-81 306.6 386 48.2
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 7.4e-81 305.1 395 44.1
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 1.3e-80 304.3 360 46.9
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 4.8e-80 302.4 369 50.1
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 1.8e-79 300.4 422 42.9
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 5.3e-79 298.9 426 43.4
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 5.3e-79 298.9 411 44.3
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.5e-78 297.4 380 46.1
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 2.0e-78 297.0 421 43.5
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.0e-78 297.0 372 49.2
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 5.8e-78 295.4 396 43.7
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 1.7e-77 293.9 376 45.7
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.7e-77 293.9 400 44.5
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 4.9e-77 292.4 412 43.2
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 4.9e-77 292.4 412 43.9
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 6.4e-77 292.0 347 50.7
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 1.4e-76 290.8 423 43.5
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 1.4e-76 290.8 413 43.3
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 1.4e-76 290.8 389 43.7
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.9e-76 290.4 382 46.3
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 3.2e-76 289.7 391 43.5
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.5e-75 286.2 354 47.5
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.3e-74 283.5 383 44.4
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 3.0e-74 283.1 402 42.5
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 1.3e-72 277.7 386 42.7
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.8e-72 275.8 311 53.7
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 4.8e-72 275.8 394 41.6
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 1.4e-71 274.2 356 45.8
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 2.4e-71 273.5 359 44.0
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 3.1e-71 273.1 419 41.5
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.5e-70 269.2 269 50.6
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.8e-70 268.9 365 43.3
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.3e-69 267.7 422 39.8
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 4.9e-69 265.8 392 42.3
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.6e-67 260.8 331 45.3
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 2.7e-67 260.0 256 55.9
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 4.6e-67 259.2 261 57.9
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 7.9e-67 258.5 370 41.6
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 2.3e-66 256.9 358 43.0
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 5.1e-66 255.8 430 39.8
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 2.4e-63 246.9 343 45.2
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 2.6e-62 243.4 394 39.8
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 5.9e-62 242.3 319 44.2
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 8.5e-61 238.4 391 39.1
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 1.9e-60 237.3 275 45.5
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 2.5e-60 236.9 240 57.9
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 2.5e-60 236.9 372 39.8
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 9.3e-60 235.0 230 51.7
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.7e-59 233.4 353 43.1
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 1.0e-58 231.5 289 45.7
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.1e-57 228.0 298 42.3
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 4.3e-57 226.1 283 45.6
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 2.8e-56 223.4 397 37.3
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 6.3e-56 222.2 275 45.5
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 3.1e-55 219.9 281 48.8
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 7.7e-54 215.3 272 44.9
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 2.2e-48 197.2 235 49.8
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 3.7e-48 196.4 283 38.2
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.8e-48 196.1 254 48.4
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 6.5e-37 159.1 142 54.2
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.9e-36 157.5 200 43.0
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 1.2e-35 154.8 194 41.8
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.6e-35 154.5 104 71.2
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 6.7e-34 149.1 170 54.7
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 7.5e-33 145.6 178 45.5
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 1.3e-32 144.8 204 43.1
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.2e-32 144.1 178 46.1
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.8e-31 141.0 82 78.0
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.8e-31 141.0 82 78.0
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 7.0e-31 139.0 92 62.0
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 2.7e-30 137.1 92 63.0
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 5.0e-29 132.9 91 61.5
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 8.0e-27 125.6 91 57.1
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 4.1e-23 113.2 77 67.5
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 5.4e-23 112.8 109 57.8
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.7e-21 107.8 89 61.8
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 1.6e-19 101.3 86 48.8
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 2.3e-13 80.9 129 48.8
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 9.5e-12 75.5 145 44.1
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 6.4e-08 62.8 50 66.0
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 1.6e-06 58.2 42 64.3
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.0e-06 57.8 50 60.0
AT3G57110 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 3.5e-06 57.0 136 39.7


User provided reference genes

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