Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold973G53763 Striga asiatica HOM05D006883 ORTHO05D008624 2.2e-230 802.0 411 100.0
MSTRG.10057 Avicennia marina HOM05D006883 ORTHO05D008624 2.1e-177 625.9 406 77.6
SalBow2G1088 Salvia bowleyana HOM05D006883 ORTHO05D008624 1.8e-171 606.3 406 76.1
CAN.G556.8 Capsicum annuum HOM05D006883 ORTHO05D008624 7.1e-165 584.3 400 73.2
Oeu044787.1 Olea europaea HOM05D006883 ORTHO05D008624 1.2e-164 583.6 403 73.9
Sopen01g029090 Solanum pennellii HOM05D006883 ORTHO05D008624 2.7e-164 582.4 400 73.8
Nitab4.5_0000829g0010 Nicotiana tabacum HOM05D006883 ORTHO05D008624 1.8e-163 579.7 397 73.3
Migut.G00206 Erythranthe guttata HOM05D006883 ORTHO05D008624 1.1e-162 577.0 404 72.5
PGSC0003DMG400022678 Solanum tuberosum HOM05D006883 ORTHO05D008624 1.5e-162 576.6 400 73.2
Peaxi162Scf00386g00096 Petunia axillaris HOM05D006883 ORTHO05D008624 7.4e-162 574.3 412 70.1
Nitab4.5_0002986g0100 Nicotiana tabacum HOM05D006883 ORTHO05D008624 9.6e-162 573.9 395 72.9
Lj6P670T41 Lonicera japonica HOM05D006883 ORTHO05D008624 4.8e-161 571.6 404 72.3
Dinv38322 Davidia involucrata HOM05D006883 ORTHO05D008624 8.2e-161 570.9 405 71.9
Cc03_g02320 Coffea canephora HOM05D006883 ORTHO05D008624 1.0e-158 563.9 404 71.8
Actinidia40226 Actinidia chinensis HOM05D006883 ORTHO05D008624 1.3e-158 563.5 406 71.2
Gohir.A10G101275 Gossypium hirsutum HOM05D006883 ORTHO05D008624 1.7e-158 563.1 404 72.0
Gorai.011G186200 Gossypium raimondii HOM05D006883 ORTHO05D008624 2.9e-158 562.4 404 72.3
Ciclev10005043m.g Citrus clementina HOM05D006883 ORTHO05D008624 1.1e-157 560.5 401 72.1
Manes.15G016500 Manihot esculenta HOM05D006883 ORTHO05D008624 1.1e-157 560.5 405 71.9
QL06p007513 Quercus lobata HOM05D006883 ORTHO05D008624 1.4e-157 560.1 407 71.3
Prupe.1G141800 Prunus persica HOM05D006883 ORTHO05D008624 2.5e-157 559.3 407 71.5
COL.COLO4_13924 Corchorus olitorius HOM05D006883 ORTHO05D008624 2.1e-156 556.2 405 72.6
CSS0008645 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 6.1e-156 554.7 407 70.0
Rhsim04G0216600 Rhododendron simsii HOM05D006883 ORTHO05D008624 7.9e-156 554.3 407 70.3
vmacro08200 Vaccinium macrocarpon HOM05D006883 ORTHO05D008624 1.0e-155 553.9 407 70.3
arahy.Tifrunner.gnm1.ann1.WI0ZBZ Arachis hypogaea HOM05D006883 ORTHO05D008624 1.8e-155 553.1 412 70.9
Potri.008G204900 Populus trichocarpa HOM05D006883 ORTHO05D008624 3.0e-155 552.4 406 70.4
Haze_01264 Corylus avellana HOM05D006883 ORTHO05D008624 3.9e-155 552.0 408 71.6
CANSAT78G0922 Cannabis sativa HOM05D006883 ORTHO05D008624 5.1e-155 551.6 399 70.2
arahy.Tifrunner.gnm1.ann1.GN2N7N Arachis hypogaea HOM05D006883 ORTHO05D008624 6.7e-155 551.2 412 70.6
Cfa015347 Carpinus fangiana HOM05D006883 ORTHO05D008624 6.7e-155 551.2 408 71.1
TAR633G1607 Trochodendron aralioides HOM05D006883 ORTHO05D008624 1.9e-154 549.7 410 69.5
Aqoxy2G03105 Aquilegia oxysepala HOM05D006883 ORTHO05D008624 2.5e-154 549.3 408 70.8
Nn4g26002 Nelumbo nucifera HOM05D006883 ORTHO05D008624 3.3e-154 548.9 348 79.6
unitig_748.g8372 Utricularia gibba HOM05D006883 ORTHO05D008624 5.7e-154 548.1 404 70.0
FAN17G0491 Fragaria x ananassa HOM05D006883 ORTHO05D008624 2.2e-153 546.2 408 70.6
Sabra08G0157100 Salix brachista HOM05D006883 ORTHO05D008624 2.2e-153 546.2 406 70.0
FAN12G0993 Fragaria x ananassa HOM05D006883 ORTHO05D008624 2.8e-153 545.8 408 69.6
FvH4_4g17240 Fragaria vesca HOM05D006883 ORTHO05D008624 3.7e-153 545.4 408 69.6
FAN12G3260 Fragaria x ananassa HOM05D006883 ORTHO05D008624 3.7e-153 545.4 408 69.6
FAN22G2222 Fragaria x ananassa HOM05D006883 ORTHO05D008624 4.8e-153 545.0 408 69.4
DCAR_030562 Daucus carota HOM05D006883 ORTHO05D008624 6.3e-153 544.7 397 69.5
Thecc.04G278100 Theobroma cacao HOM05D006883 ORTHO05D008624 8.2e-153 544.3 407 69.3
TWI53G0676 Tripterygium wilfordii HOM05D006883 ORTHO05D008624 1.4e-152 543.5 406 69.7
Actinidia23426 Actinidia chinensis HOM05D006883 ORTHO05D008624 1.8e-152 543.1 369 75.1
TWI53G1857 Tripterygium wilfordii HOM05D006883 ORTHO05D008624 1.8e-152 543.1 406 69.5
PSO210G3900 Papaver somniferum HOM05D006883 ORTHO05D008624 2.4e-152 542.7 405 70.9
Lalb_Chr18g0055701 Lupinus albus HOM05D006883 ORTHO05D008624 6.9e-152 541.2 404 69.6
RcHm_v2.0_Chr4g0421151 Rosa chinensis HOM05D006883 ORTHO05D008624 1.2e-151 540.4 405 70.1
Glyma.15G097700 Glycine max HOM05D006883 ORTHO05D008624 1.5e-151 540.0 404 70.5
CiPaw.02G086300 Carya illinoinensis HOM05D006883 ORTHO05D008624 2.0e-151 539.7 407 69.8
Lsat_1_v5_gn_3_24840 Lactuca sativa HOM05D006883 ORTHO05D008624 2.0e-151 539.7 406 70.2
HanXRQChr08g0208101 Helianthus annuus HOM05D006883 ORTHO05D008624 5.9e-151 538.1 389 72.0
PGR004G1631 Punica granatum HOM05D006883 ORTHO05D008624 5.9e-151 538.1 341 77.7
CDE11G0693 Ceratophyllum demersum HOM05D006883 ORTHO05D008624 2.2e-150 536.2 347 76.9
LjContig00389g0025618 Lotus japonicus HOM05D006883 ORTHO05D008624 2.2e-150 536.2 410 68.5
Lalb_Chr15g0087031 Lupinus albus HOM05D006883 ORTHO05D008624 2.2e-150 536.2 404 68.6
Glyma.13G215400 Glycine max HOM05D006883 ORTHO05D008624 6.5e-150 534.6 404 69.6
Duzib052G0675 Durio zibethinus HOM05D006883 ORTHO05D008624 1.1e-149 533.9 407 68.3
PSO170G0113 Papaver somniferum HOM05D006883 ORTHO05D008624 1.9e-149 533.1 404 69.3
EL10Ac4g09099 Beta vulgaris HOM05D006883 ORTHO05D008624 3.2e-149 532.3 382 72.5
Ah.06g192160 Amaranthus hybridus HOM05D006883 ORTHO05D008624 5.5e-149 531.6 367 74.1
MD13G1173600 Malus domestica HOM05D006883 ORTHO05D008624 7.2e-149 531.2 410 69.0
ECA246G3623 Erigeron canadensis HOM05D006883 ORTHO05D008624 2.1e-148 529.6 378 70.9
Phvul.006G161600 Phaseolus vulgaris HOM05D006883 ORTHO05D008624 2.1e-148 529.6 407 69.8
Eucgr.H03771 Eucalyptus grandis HOM05D006883 ORTHO05D008624 3.6e-148 528.9 404 68.3
Ca_00572_v3 Cicer arietinum L. HOM05D006883 ORTHO05D008624 1.4e-147 526.9 366 73.0
AL6G29930 Arabidopsis lyrata HOM05D006883 ORTHO05D008624 1.8e-147 526.6 405 67.2
Thhalv10013668m.g Eutrema salsugineum HOM05D006883 ORTHO05D008624 1.8e-147 526.6 406 67.5
Sp6g25680 Schrenkiella parvula HOM05D006883 ORTHO05D008624 1.8e-147 526.6 406 67.7
Sed0024317 Sechium edule HOM05D006883 ORTHO05D008624 5.1e-147 525.0 406 67.5
AT5G18660 Arabidopsis thaliana HOM05D006883 ORTHO05D008624 6.7e-147 524.6 407 66.8
Carub.0006s1695 Capsella rubella HOM05D006883 ORTHO05D008624 1.5e-146 523.5 405 66.7
Psat1g187280 Pisum sativum HOM05D006883 ORTHO05D008624 2.0e-146 523.1 406 68.7
AUR62041764 Chenopodium quinoa HOM05D006883 ORTHO05D008624 2.5e-146 522.7 358 74.6
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 9.7e-146 520.8 397 66.8
AUR62041032 Chenopodium quinoa HOM05D006883 ORTHO05D008624 1.3e-145 520.4 329 79.0
THA.LOC104802726 Tarenaya hassleriana HOM05D006883 ORTHO05D008624 4.8e-145 518.5 404 65.1
Atru.BG.87.p Acer truncatum HOM05D006883 ORTHO05D008624 1.1e-144 517.3 329 79.3
BcaC04g18657 Brassica carinata HOM05D006883 ORTHO05D008624 1.1e-144 517.3 400 66.0
BolC9t58650H Brassica oleracea HOM05D006883 ORTHO05D008624 1.1e-144 517.3 400 66.0
CARHR194360 Cardamine hirsuta HOM05D006883 ORTHO05D008624 1.1e-144 517.3 403 66.7
CsaV3_3G014130 Cucumis sativus L. HOM05D006883 ORTHO05D008624 3.1e-144 515.8 406 66.5
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 5.3e-144 515.0 405 64.9
Medtr2g020160 Medicago truncatula HOM05D006883 ORTHO05D008624 5.3e-144 515.0 407 67.3
Sc25g0004770 Simmondsia chinensis HOM05D006883 ORTHO05D008624 5.3e-144 515.0 402 67.7
TPR.G1530 Trifolium pratense HOM05D006883 ORTHO05D008624 2.6e-143 512.7 399 67.2
Aa31LG11G10960 Aethionema arabicum HOM05D006883 ORTHO05D008624 4.5e-143 511.9 406 66.3
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 4.5e-143 511.9 400 66.0
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 5.9e-143 511.5 403 65.3
MBI19_g30852_MAGBIO Magnolia biondii HOM05D006883 ORTHO05D008624 4.2e-141 505.4 343 73.2
CSS0011936 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 7.2e-141 504.6 360 68.6
CSS0009780 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 6.1e-140 501.5 360 68.1
ATR0706G234 Amborella trichopoda HOM05D006883 ORTHO05D008624 5.1e-139 498.4 365 69.3
SEGI_20295 Sequoiadendron giganteum HOM05D006883 ORTHO05D008624 1.1e-136 490.7 343 72.0
CDE02G1591 Ceratophyllum demersum HOM05D006883 ORTHO05D008624 1.6e-132 476.9 397 63.7
AagrBONN_evm.TU.Sc2ySwM_369.460 Anthoceros agrestis HOM05D006883 ORTHO05D008624 1.1e-130 470.7 338 68.6
Mapoly0058s0049 Marchantia polymorpha HOM05D006883 ORTHO05D008624 1.1e-130 470.7 407 59.5
HPP92_006930 Vanilla planifolia HOM05D006883 ORTHO05D008624 4.1e-128 462.2 399 60.7
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 1.0e-123 447.6 355 66.8
Pp3c7_3620 Physcomitrium patens HOM05D006883 ORTHO05D008624 2.0e-122 443.4 374 62.3
CBR_g77624 Chara braunii HOM05D006883 ORTHO05D008624 3.5e-119 432.6 340 63.5
Os03g0351200 Oryza sativa ssp. japonica HOM05D006883 ORTHO05D008624 3.5e-119 432.6 383 59.8
Zm00001eb016830 Zea mays HOM05D006883 ORTHO05D008624 3.5e-119 432.6 349 63.3
Gohir.D10G166900 Gossypium hirsutum HOM05D006883 ORTHO05D008624 9.5e-109 397.9 239 80.8
Cpa.g.sc1008.1 Carica papaya HOM05D006883 ORTHO05D008624 2.8e-108 396.4 320 65.6
Cre01.g042800 Chlamydomonas reinhardtii HOM05D006883 ORTHO05D008624 8.9e-107 391.3 366 55.5
SMO174G0102 Selaginella moellendorffii HOM05D006883 ORTHO05D008624 1.7e-102 377.1 333 59.8
MCO03G528 Micromonas commoda HOM05D006883 ORTHO05D008624 3.9e-102 375.9 334 59.3
DCAR_030560 Daucus carota HOM05D006883 ORTHO05D008624 1.7e-89 334.0 218 74.8
MELO3C006606.2 Cucumis melo HOM05D006883 ORTHO05D008624 4.3e-85 319.3 207 75.4
Solyc01g067290.3 Solanum lycopersicum HOM05D006883 ORTHO05D008624 7.1e-80 302.0 177 79.1
DCAR_030558 Daucus carota HOM05D006883 ORTHO05D008624 2.5e-77 293.5 177 76.8
PRCOL_00006445 Prasinoderma coloniale HOM05D006883 ORTHO05D008624 1.7e-65 254.2 350 39.7
Oeu061954.1 Olea europaea HOM05D006883 ORTHO05D008624 3.9e-30 136.7 120 58.3
Migut.M00184 Erythranthe guttata HOM05D006883 ORTHO05D008624 3.4e-26 123.6 124 55.6
GSVIVG01017797001 Vitis vinifera HOM05D006883 ORTHO05D008624 4.1e-19 100.1 140 46.4
Glyma.01G172900 Glycine max HOM05D000342 ORTHO05D000217 1.6e-10 71.6 282 28.4
Glyma.11G070200 Glycine max HOM05D000342 ORTHO05D000217 1.6e-10 71.6 281 28.5
CBR_g37527 Chara braunii HOM05D006026 ORTHO05D007502 3.2e-08 63.9 281 23.8
Oeu023320.2 Olea europaea HOM05D000342 ORTHO05D000217 5.5e-08 63.2 228 25.4
Lj2g0027531 Lotus japonicus HOM05D000342 ORTHO05D000217 1.6e-07 61.6 230 27.0
AagrBONN_evm.TU.Sc2ySwM_228.3661 Anthoceros agrestis HOM05D006026 ORTHO05D007502 2.1e-07 61.2 262 25.2
Thecc.02G047100 Theobroma cacao HOM05D006026 ORTHO05D007502 3.6e-07 60.5 325 24.9
Dinv00848 Davidia involucrata HOM05D000342 ORTHO05D000217 4.7e-07 60.1 257 26.5
Psat2g158280 Pisum sativum HOM05D000342 ORTHO05D000217 4.7e-07 60.1 230 25.7
TPR.G2351 Trifolium pratense HOM05D000342 ORTHO05D000217 6.1e-07 59.7 230 25.2
Sopen03g006710 Solanum pennellii HOM05D000342 ORTHO05D000217 8.0e-07 59.3 231 25.5
Peaxi162Scf00362g00257 Petunia axillaris HOM05D006026 ORTHO05D007502 1.0e-06 58.9 327 23.2
Pp3c27_8140 Physcomitrium patens HOM05D006026 ORTHO05D007502 1.0e-06 58.9 306 23.5
PGSC0003DMG400022577 Solanum tuberosum HOM05D000342 ORTHO05D000217 1.0e-06 58.9 231 24.2
SGA_v2.0_scaffold32G13334 Striga asiatica HOM05D006026 ORTHO05D007502 1.0e-06 58.9 323 23.5
CsaV3_7G010200 Cucumis sativus L. HOM05D005785 ORTHO05D007962 1.4e-06 58.5 261 30.3
Solyc03g033970.1 Solanum lycopersicum HOM05D000342 ORTHO05D000217 1.4e-06 58.5 234 25.2
TPR.G2388 Trifolium pratense HOM05D000342 ORTHO05D000217 1.4e-06 58.5 230 26.5
Dinv19546 Davidia involucrata HOM05D000101 ORTHO05D000089 1.8e-06 58.2 263 26.2
Gorai.006G093300 Gossypium raimondii HOM05D005455 ORTHO05D007017 1.8e-06 58.2 217 27.6
VMungo1309G0279 Vigna mungo HOM05D006026 ORTHO05D007502 1.8e-06 58.2 333 23.4
arahy.Tifrunner.gnm1.ann1.A1R83D Arachis hypogaea HOM05D000342 ORTHO05D000217 2.3e-06 57.8 230 26.5
Cpa.g.sc6.140 Carica papaya HOM05D000342 ORTHO05D000217 2.3e-06 57.8 252 23.0
AUR62007401 Chenopodium quinoa HOM05D000342 ORTHO05D000217 2.3e-06 57.8 250 24.8
Gohir.D09G078100 Gossypium hirsutum HOM05D005455 ORTHO05D007017 2.3e-06 57.8 220 28.2
Medtr5g020740 Medicago truncatula HOM05D000342 ORTHO05D000217 2.3e-06 57.8 231 24.7
SMO011G0028 Selaginella moellendorffii HOM05D006026 ORTHO05D007502 2.3e-06 57.8 281 24.9
Dinv42709 Davidia involucrata HOM05D000342 ORTHO05D000217 3.0e-06 57.4 257 25.3
Dinv43392 Davidia involucrata HOM05D000342 ORTHO05D000217 3.0e-06 57.4 257 25.3
Migut.B00021 Erythranthe guttata HOM05D006026 ORTHO05D007502 3.0e-06 57.4 323 22.3
Glyma.01G172700 Glycine max HOM05D000342 ORTHO05D000217 3.0e-06 57.4 230 26.5
Gohir.A09G077900 Gossypium hirsutum HOM05D005455 ORTHO05D007017 3.0e-06 57.4 227 28.2
PSO675G4706 Papaver somniferum HOM05D006026 ORTHO05D007502 3.0e-06 57.4 384 23.4
Atru.chr5.3501 Acer truncatum HOM05D006026 ORTHO05D007502 4.0e-06 57.0 294 23.1
MSTRG.19950 Avicennia marina HOM05D006026 ORTHO05D007502 4.0e-06 57.0 281 23.8
Cre02.g142146 Chlamydomonas reinhardtii HOM05D006026 ORTHO05D007502 4.0e-06 57.0 363 22.6
Eucgr.B01777 Eucalyptus grandis HOM05D000342 ORTHO05D000217 4.0e-06 57.0 253 26.1
SMO134G0234 Selaginella moellendorffii HOM05D000342 ORTHO05D000217 4.0e-06 57.0 248 23.0
Zm00001eb038110 Zea mays HOM05D005455 ORTHO05D007017 4.0e-06 57.0 209 29.2
Cpa.g.sc20.183 Carica papaya HOM05D006026 ORTHO05D007502 5.2e-06 56.6 311 25.1
Gohir.A03G209000 Gossypium hirsutum HOM05D006026 ORTHO05D007502 5.2e-06 56.6 305 23.9
PSO541G6277 Papaver somniferum HOM05D006026 ORTHO05D007502 5.2e-06 56.6 384 23.2
VMungo1127G1380 Vigna mungo HOM05D000342 ORTHO05D000217 5.2e-06 56.6 232 25.9
CAN.G1235.18 Capsicum annuum HOM05D006026 ORTHO05D007502 6.8e-06 56.2 281 22.8
Ca_24867_v3 Cicer arietinum L. HOM05D000342 ORTHO05D000217 6.8e-06 56.2 229 26.2
Nitab4.5_0000031g0370 Nicotiana tabacum HOM05D000342 ORTHO05D000217 6.8e-06 56.2 230 24.3
Potri.011G079600 Populus trichocarpa HOM05D005455 ORTHO05D007017 6.8e-06 56.2 230 24.8
Solyc01g112060.4 Solanum lycopersicum HOM05D006026 ORTHO05D007502 6.8e-06 56.2 281 22.8
Sopen01g054110 Solanum pennellii HOM05D006026 ORTHO05D007502 6.8e-06 56.2 281 22.8
HPP92_023862 Vanilla planifolia HOM05D005455 ORTHO05D007017 6.8e-06 56.2 216 26.9
CDE05G1234 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 8.8e-06 55.8 284 23.6
CsaV3_2G014820 Cucumis sativus L. HOM05D000342 ORTHO05D000217 8.8e-06 55.8 251 26.7
DCAR_013829 Daucus carota HOM05D000342 ORTHO05D000217 8.8e-06 55.8 231 30.3
Dinv31217 Davidia involucrata HOM05D000342 ORTHO05D000217 8.8e-06 55.8 257 24.9
Eucgr.E00344 Eucalyptus grandis HOM05D000342 ORTHO05D000217 8.8e-06 55.8 252 25.8
FvH4_2g16360 Fragaria vesca HOM05D006026 ORTHO05D007502 8.8e-06 55.8 324 23.1
FAN24G0545 Fragaria x ananassa HOM05D006026 ORTHO05D007502 8.8e-06 55.8 324 23.1
FAN24G2355 Fragaria x ananassa HOM05D006026 ORTHO05D007502 8.8e-06 55.8 324 23.1
MBI08_g19978_MAGBIO Magnolia biondii HOM05D006026 ORTHO05D007502 8.8e-06 55.8 296 23.3
Hund06172 Selenicereus undatus HOM05D006026 ORTHO05D007502 8.8e-06 55.8 347 23.3
PGSC0003DMG400018657 Solanum tuberosum HOM05D006026 ORTHO05D007502 8.8e-06 55.8 281 22.4
Thecc.02G083100 Theobroma cacao HOM05D000342 ORTHO05D000217 8.8e-06 55.8 227 27.3
vmacro02320 Vaccinium macrocarpon HOM05D006026 ORTHO05D007502 8.8e-06 55.8 349 22.6


User provided reference genes

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