Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G29125 Striga asiatica HOM05D005152 ORTHO05D006162 1.3e-70 269.6 133 100.0
SGA_v2.0_scaffold79G25574 Striga asiatica HOM05D005152 ORTHO05D006162 1.9e-50 202.6 99 99.0
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 3.2e-50 201.8 145 69.0
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 3.2e-50 201.8 145 71.0
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 1.5e-44 183.0 145 66.9
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 1.5e-44 183.0 145 66.9
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 1.3e-43 179.9 145 66.2
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 1.7e-43 179.5 146 66.4
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 2.9e-43 178.7 144 61.8
Rhsim13G0207600 Rhododendron simsii HOM05D005152 ORTHO05D006162 8.5e-43 177.2 143 62.9
Cc02_g30140 Coffea canephora HOM05D005152 ORTHO05D006162 1.4e-42 176.4 145 62.8
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 1.4e-42 176.4 149 58.4
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 1.9e-42 176.0 143 65.0
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 3.2e-42 175.3 145 60.7
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 9.4e-42 173.7 141 63.1
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 1.2e-41 173.3 145 60.7
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 3.6e-41 171.8 145 62.1
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 5.2e-40 167.9 143 58.7
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 1.5e-39 166.4 145 60.0
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 2.6e-39 165.6 152 56.6
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 7.4e-39 164.1 151 57.6
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 7.4e-39 164.1 161 58.4
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 1.7e-38 162.9 148 59.5
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 1.7e-38 162.9 145 57.2
MD08G1241200 Malus domestica HOM05D005152 ORTHO05D006162 2.2e-38 162.5 166 55.4
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 2.8e-38 162.2 159 56.6
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 3.7e-38 161.8 148 58.8
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 6.3e-38 161.0 159 56.6
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 6.3e-38 161.0 144 61.1
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 8.2e-38 160.6 144 57.6
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 1.1e-37 160.2 141 53.2
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 2.4e-37 159.1 164 54.9
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 4.1e-37 158.3 135 61.5
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 4.1e-37 158.3 164 55.5
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 4.1e-37 158.3 158 54.4
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 7.0e-37 157.5 159 54.7
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.6e-36 156.4 161 54.7
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 2.0e-36 156.0 123 62.6
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 2.0e-36 156.0 161 55.3
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 2.6e-36 155.6 142 57.7
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 2.6e-36 155.6 151 53.0
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 3.5e-36 155.2 161 55.3
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 3.5e-36 155.2 161 55.3
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 5.9e-36 154.5 156 55.1
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 7.7e-36 154.1 143 55.2
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 1.3e-35 153.3 143 54.5
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 1.3e-35 153.3 143 54.5
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 1.3e-35 153.3 135 60.0
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 1.3e-35 153.3 134 57.5
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 2.2e-35 152.5 151 53.0
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 2.9e-35 152.1 122 61.5
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 3.8e-35 151.8 161 53.4
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 6.5e-35 151.0 151 52.3
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 6.5e-35 151.0 144 56.9
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 8.5e-35 150.6 151 52.3
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 1.9e-34 149.4 122 58.2
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 1.9e-34 149.4 153 51.0
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 1.9e-34 149.4 141 55.3
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 2.5e-34 149.1 141 53.2
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 2.5e-34 149.1 122 59.0
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 2.5e-34 149.1 122 59.0
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 3.2e-34 148.7 168 51.8
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 4.2e-34 148.3 142 54.9
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 4.2e-34 148.3 156 51.9
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 5.5e-34 147.9 145 54.5
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 7.2e-34 147.5 123 61.0
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 2.1e-33 146.0 142 51.4
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 4.7e-33 144.8 141 51.1
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 6.1e-33 144.4 153 51.6
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 1.4e-32 143.3 144 50.0
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 1.2e-31 140.2 130 51.5
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 1.2e-31 140.2 139 51.1
Atru.chr11.1399 Acer truncatum HOM05D005152 ORTHO05D006162 3.4e-31 138.7 144 52.1
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 3.4e-31 138.7 122 53.3
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 9.7e-31 137.1 123 56.1
Sc09g0005740 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.2e-30 136.0 140 48.6
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 8.3e-30 134.0 122 50.8
SEGI_04037 Sequoiadendron giganteum HOM05D005152 ORTHO05D006162 2.4e-29 132.5 122 47.5
CDE07G1900 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 4.1e-29 131.7 122 50.0
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 5.3e-29 131.3 123 52.8
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 1.2e-28 130.2 147 45.6
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 2.7e-28 129.0 142 47.9
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 3.5e-28 128.6 148 47.3
CAN.G437.19 Capsicum annuum HOM05D005152 ORTHO05D006162 4.5e-28 128.3 133 54.1
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 4.5e-28 128.3 140 50.7
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 7.7e-28 127.5 124 52.4
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 2.9e-27 125.6 124 52.4
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 3.8e-27 125.2 123 54.5
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 5.0e-27 124.8 122 50.8
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 5.0e-27 124.8 142 47.2
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 8.5e-27 124.0 123 53.7
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 1.5e-26 123.2 142 46.5
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 2.5e-26 122.5 123 52.0
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 4.2e-26 121.7 137 48.9
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 9.4e-26 120.6 142 46.5
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 9.4e-26 120.6 143 47.6
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 9.4e-26 120.6 109 56.0
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 2.7e-25 119.0 141 47.5
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 3.6e-25 118.6 141 46.8
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 4.7e-25 118.2 141 46.8
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 4.7e-25 118.2 141 46.8
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 4.7e-25 118.2 141 46.8
Oeu046803.1 Olea europaea HOM05D005152 ORTHO05D006162 2.3e-24 115.9 86 67.4
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 6.8e-24 114.4 140 45.7
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 9.8e-23 110.5 142 43.0
AagrBONN_evm.TU.Sc2ySwM_228.1465 Anthoceros agrestis HOM05D005152 ORTHO05D006162 3.7e-22 108.6 120 42.5
GSVIVG01029301001 Vitis vinifera HOM05D005152 ORTHO05D006162 8.3e-22 107.5 83 62.7
Mapoly0027s0150 Marchantia polymorpha HOM05D005152 ORTHO05D006162 1.8e-21 106.3 120 40.8
Pp3c5_25710 Physcomitrium patens HOM05D005152 ORTHO05D006162 4.1e-21 105.1 120 42.5
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 7.0e-21 104.4 139 46.0
Pp3c25_13080 Physcomitrium patens HOM05D005152 ORTHO05D006162 1.5e-18 96.7 121 39.7
Sc09g0005720 Simmondsia chinensis HOM05D005152 ORTHO05D006162 5.7e-15 84.7 69 58.0
SMO361G0105 Selaginella moellendorffii HOM05D005152 ORTHO05D006162 2.2e-14 82.8 122 31.1
Hund07429 Selenicereus undatus HOM05D005152 ORTHO05D006162 1.3e-11 73.6 99 44.4
MCO05G618 Micromonas commoda HOM05D005152 ORTHO05D006162 2.3e-11 72.8 122 35.2
Cpa.g.sc189.1 Carica papaya HOM05D005152 ORTHO05D006162 3.6e-09 65.5 59 55.9
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 1.0e-08 63.9 58 56.9
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 1.0e-08 63.9 58 56.9
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 8.9e-08 60.8 35 80.0
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 2.9e-06 55.8 35 68.6


User provided reference genes

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