Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 0.0e+00 1276.2 666 100.0
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1085.1 717 81.2
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 4.5e-310 1067.4 718 79.1
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 5.9e-310 1067.0 710 80.0
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-309 1065.4 717 79.8
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.4e-308 1062.4 720 78.6
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-308 1062.0 717 79.5
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 2.7e-307 1058.1 717 78.9
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 1.8e-306 1055.4 716 79.2
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 3.0e-306 1054.7 715 79.3
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 5.7e-305 1050.4 667 81.7
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 1.3e-304 1049.3 700 78.4
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 5.3e-303 1043.9 704 78.8
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 9.1e-303 1043.1 708 77.7
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 2.6e-302 1041.6 699 79.0
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 2.6e-302 1041.6 711 77.6
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 7.7e-302 1040.0 705 77.9
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 5.0e-301 1037.3 695 79.3
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 5.0e-301 1037.3 695 79.3
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 6.5e-301 1036.9 696 79.2
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 1.5e-300 1035.8 700 77.9
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 1.9e-300 1035.4 711 76.7
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 3.2e-300 1034.6 707 77.1
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 7.2e-300 1033.5 708 77.7
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.2e-299 1032.7 699 77.7
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.1e-299 1031.9 708 76.4
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 4.7e-299 1030.8 710 76.8
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 6.1e-299 1030.4 700 78.3
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 6.1e-299 1030.4 709 77.0
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 8.0e-299 1030.0 704 78.6
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-298 1028.5 717 77.8
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 5.2e-298 1027.3 700 77.1
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 5.2e-298 1027.3 708 77.0
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 6.7e-298 1026.9 717 76.3
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 8.8e-298 1026.5 707 77.7
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 1.5e-297 1025.8 709 77.0
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 3.3e-297 1024.6 701 77.2
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 1.7e-296 1022.3 700 77.1
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 1.1e-295 1019.6 712 76.5
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 1.4e-295 1019.2 699 77.5
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 2.4e-295 1018.5 702 77.1
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 4.1e-295 1017.7 699 77.5
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 5.3e-295 1017.3 701 76.3
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 7.0e-295 1016.9 699 77.7
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 1.6e-294 1015.8 689 78.7
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 4.5e-294 1014.2 697 77.2
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 1.3e-293 1012.7 699 75.8
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 3.8e-293 1011.1 718 74.7
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 3.2e-292 1008.1 735 74.4
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 2.7e-291 1005.0 701 75.6
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 3.6e-291 1004.6 702 76.2
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 1.8e-290 1002.3 693 76.9
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-290 1001.9 716 76.8
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 1.5e-289 999.2 704 75.3
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 1.3e-288 996.1 694 76.4
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 4.5e-286 987.6 708 73.3
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 4.5e-286 987.6 691 75.7
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 5.9e-286 987.3 708 73.3
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.0e-285 986.5 670 77.3
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 1.0e-285 986.5 705 74.6
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.8e-285 984.6 700 74.1
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 1.5e-284 982.6 677 78.0
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.9e-284 982.2 664 78.3
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 5.5e-284 980.7 699 74.4
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 4.0e-282 974.5 694 74.9
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 9.8e-281 969.9 694 73.3
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.3e-280 969.5 746 72.3
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 8.3e-280 966.8 698 73.2
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 1.8e-279 965.7 700 71.7
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 2.3e-277 958.7 699 73.0
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 2.3e-277 958.7 699 73.1
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 2.3e-277 958.7 699 72.2
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 2.9e-277 958.4 699 73.0
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 3.8e-277 958.0 699 73.0
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 3.8e-277 958.0 699 73.0
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 6.6e-277 957.2 699 73.1
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 9.5e-276 953.4 694 72.3
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 3.6e-275 951.4 678 76.1
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.0e-274 949.9 688 74.9
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 5.2e-274 947.6 699 71.4
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.5e-273 946.0 700 71.4
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 2.6e-273 945.3 700 70.9
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 2.6e-273 945.3 702 71.2
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 3.4e-273 944.9 691 74.2
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 4.4e-273 944.5 656 76.2
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 7.5e-273 943.7 702 71.1
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 9.8e-273 943.3 697 70.9
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 1.8e-271 939.1 702 71.1
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 1.8e-271 939.1 702 71.1
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 1.8e-271 939.1 702 71.1
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 7.8e-270 933.7 707 70.0
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.5e-268 928.7 621 78.1
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.1e-267 925.6 657 76.0
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.1e-266 921.8 676 71.9
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.5e-265 919.5 662 75.8
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 3.4e-265 918.3 611 78.6
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.2e-262 909.8 656 73.3
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 3.3e-260 901.7 687 69.6
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 3.3e-260 901.7 714 67.6
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.6e-259 899.4 692 69.1
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 5.8e-257 891.0 700 67.6
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.9e-256 887.9 705 68.5
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.9e-256 887.9 702 67.8
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 7.8e-254 880.6 584 79.6
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 9.5e-252 873.6 570 80.5
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 9.2e-247 857.1 658 69.1
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 6.6e-245 850.9 538 83.3
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.7e-243 844.7 739 65.6
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.3e-223 777.3 568 72.2
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 3.0e-221 772.3 740 61.5
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 8.7e-221 770.8 700 63.4
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.8e-219 765.8 535 74.4
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 3.5e-214 748.8 696 60.9
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.4e-212 741.1 535 74.6
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.8e-202 709.9 449 84.6
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 4.8e-195 685.3 576 65.6
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.0e-182 641.3 542 67.9
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 2.1e-174 616.7 678 50.7
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.2e-167 592.4 403 78.4
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.2e-167 591.7 393 79.9
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 8.8e-165 584.7 586 54.1
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-163 580.5 369 83.5
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 3.1e-162 576.2 518 63.5
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 8.6e-144 515.0 632 45.7
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.3e-136 490.3 637 44.4
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 6.6e-136 488.8 639 45.1
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.2e-115 420.6 307 71.0
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.4e-114 417.9 634 39.3
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.4e-114 416.0 631 39.1
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.1e-112 409.5 634 39.4
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 7.6e-108 395.6 624 39.7
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.6e-103 378.6 399 56.9
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 2.4e-93 347.4 720 36.9
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 7.6e-92 342.4 399 49.1
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.1e-80 303.1 246 69.1
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 7.4e-71 272.7 222 62.2
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 8.0e-57 226.1 199 65.3
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-54 218.4 171 70.2
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.0e-36 156.8 91 84.6
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 7.3e-26 123.2 101 62.4
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.6e-25 120.9 138 48.6
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 8.9e-24 116.3 95 61.1
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 5.2e-16 90.5 63 74.6
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 2.0e-15 88.6 56 76.8
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 4.2e-13 80.9 68 64.7
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.2e-13 79.7 47 80.9
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 1.2e-12 79.3 68 63.2
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 2.1e-12 78.6 63 66.7
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 2.7e-12 78.2 63 66.7
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 7.3e-10 70.1 39 82.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.1e-09 68.6 36 86.1


User provided reference genes

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