Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G29023 Striga asiatica HOM05D000324 ORTHO05D401504 1.1e-56 223.0 109 100.0
SGA_v2.0_scaffold334G49090 Striga asiatica HOM05D000324 ORTHO05D001014 4.2e-24 114.8 77 74.0
SGA_v2.0_scaffold376G50302 Striga asiatica HOM05D000324 ORTHO05D001014 1.4e-19 99.8 88 61.4
MSTRG.21709 Avicennia marina HOM05D000324 ORTHO05D001014 1.2e-18 96.7 88 58.0
Migut.D00057 Erythranthe guttata HOM05D000324 ORTHO05D001014 5.9e-18 94.4 88 54.5
SalBow3G1438 Salvia bowleyana HOM05D000324 ORTHO05D001014 1.7e-17 92.8 88 54.5
MSTRG.18080 Avicennia marina HOM05D000324 ORTHO05D001014 3.8e-17 91.7 88 53.4
Sc06g0010660 Simmondsia chinensis HOM05D000324 ORTHO05D001014 9.5e-16 87.0 95 49.5
ECA247G0071 Erigeron canadensis HOM05D000324 ORTHO05D001014 1.6e-15 86.3 107 45.8
Sabra02G0163500 Salix brachista HOM05D000324 ORTHO05D001014 1.6e-15 86.3 85 50.6
PGR083G2460 Punica granatum HOM05D000324 ORTHO05D001014 6.1e-15 84.3 87 52.9
unitig_578.g16633 Utricularia gibba HOM05D000324 ORTHO05D001014 6.1e-15 84.3 95 45.3
Actinidia21374 Actinidia chinensis HOM05D000324 ORTHO05D001014 1.4e-14 83.2 88 52.3
Lsat_1_v5_gn_9_2000 Lactuca sativa HOM05D000324 ORTHO05D001014 1.4e-14 83.2 95 46.3
Cc01_g21620 Coffea canephora HOM05D000324 ORTHO05D001014 1.8e-14 82.8 94 50.0
Oeu038045.1 Olea europaea HOM05D000324 ORTHO05D001014 1.8e-14 82.8 89 51.7
Thecc.01G318300 Theobroma cacao HOM05D000324 ORTHO05D001014 1.8e-14 82.8 87 50.6
HanXRQChr15g0465101 Helianthus annuus HOM05D000324 ORTHO05D001014 3.0e-14 82.0 95 45.3
Manes.01G230600 Manihot esculenta HOM05D000324 ORTHO05D001014 3.0e-14 82.0 89 50.6
HanXRQChr04g0106251 Helianthus annuus HOM05D000324 ORTHO05D001014 4.0e-14 81.6 95 44.2
Lalb_Chr06g0167001 Lupinus albus HOM05D000324 ORTHO05D001014 4.0e-14 81.6 95 46.3
C03p30850 Brassica napus HOM05D000324 ORTHO05D001014 6.8e-14 80.9 162 33.3
Actinidia37702 Actinidia chinensis HOM05D000324 ORTHO05D026278 8.9e-14 80.5 87 50.6
Gohir.A07G129500 Gossypium hirsutum HOM05D000324 ORTHO05D001014 1.2e-13 80.1 87 50.6
Dinv33138 Davidia involucrata HOM05D000324 ORTHO05D001014 1.5e-13 79.7 88 48.9
MD09G1286100 Malus domestica HOM05D000324 ORTHO05D001014 1.5e-13 79.7 95 45.3
Prupe.3G007200 Prunus persica HOM05D000324 ORTHO05D001014 1.5e-13 79.7 95 44.2
Cpa.g.sc18.93 Carica papaya HOM05D000324 ORTHO05D001014 2.0e-13 79.3 88 47.7
AUR62011760 Chenopodium quinoa HOM05D000324 ORTHO05D001014 2.0e-13 79.3 84 50.0
AUR62024606 Chenopodium quinoa HOM05D000324 ORTHO05D001014 2.0e-13 79.3 84 50.0
CsaV3_3G026550 Cucumis sativus L. HOM05D000324 ORTHO05D001014 2.0e-13 79.3 95 46.3
Actinidia17923 Actinidia chinensis HOM05D000324 ORTHO05D001014 2.6e-13 79.0 88 48.9
arahy.Tifrunner.gnm1.ann1.J7GXUY Arachis hypogaea HOM05D000324 ORTHO05D001014 2.6e-13 79.0 85 49.4
EL10As5g23576 Beta vulgaris HOM05D000324 ORTHO05D001014 2.6e-13 79.0 84 47.6
Haze_05079 Corylus avellana HOM05D000324 ORTHO05D001014 2.6e-13 79.0 94 45.7
Lj5g0015960 Lotus japonicus HOM05D000324 ORTHO05D001014 2.6e-13 79.0 95 45.3
Gohir.D07G133900 Gossypium hirsutum HOM05D000324 ORTHO05D001014 3.4e-13 78.6 87 49.4
Gorai.001G145200 Gossypium raimondii HOM05D000324 ORTHO05D001014 3.4e-13 78.6 87 49.4
Nn3g21800 Nelumbo nucifera HOM05D000324 ORTHO05D001014 3.4e-13 78.6 87 48.3
CSS0044727 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D001014 4.4e-13 78.2 87 50.6
Ciclev10019205m.g Citrus clementina HOM05D000324 ORTHO05D001014 4.4e-13 78.2 95 44.2
DCAR_012325 Daucus carota HOM05D000324 ORTHO05D001014 4.4e-13 78.2 87 49.4
Lj2A1210T29 Lonicera japonica HOM05D000324 ORTHO05D001014 4.4e-13 78.2 96 45.8
TWI59G0796 Tripterygium wilfordii HOM05D000324 ORTHO05D001014 4.4e-13 78.2 87 48.3
MELO3C012928.2 Cucumis melo HOM05D000324 ORTHO05D001014 5.8e-13 77.8 95 45.3
Lsat_1_v5_gn_9_81620 Lactuca sativa HOM05D000324 ORTHO05D001014 5.8e-13 77.8 87 48.3
Lalb_Chr02g0146931 Lupinus albus HOM05D000324 ORTHO05D001014 5.8e-13 77.8 95 45.3
MBI19_g03277_MAGBIO Magnolia biondii HOM05D000324 ORTHO05D001014 5.8e-13 77.8 88 47.7
Peaxi162Scf00770g00126 Petunia axillaris HOM05D000324 ORTHO05D001014 5.8e-13 77.8 87 51.7
Atru.chr5.947 Acer truncatum HOM05D000324 ORTHO05D001014 7.5e-13 77.4 95 43.2
ECA236G3896 Erigeron canadensis HOM05D000324 ORTHO05D001014 7.5e-13 77.4 88 46.6
FAN23G1291 Fragaria x ananassa HOM05D000324 ORTHO05D010033 9.8e-13 77.0 76 50.0
THA.LOC104802143 Tarenaya hassleriana HOM05D000324 ORTHO05D001014 9.8e-13 77.0 89 44.9
arahy.Tifrunner.gnm1.ann1.3WFA2L Arachis hypogaea HOM05D000324 ORTHO05D001014 1.3e-12 76.6 95 45.3
Eucgr.H00913 Eucalyptus grandis HOM05D000324 ORTHO05D001014 1.3e-12 76.6 88 45.5
Cfa005757 Carpinus fangiana HOM05D000324 ORTHO05D001014 1.7e-12 76.3 87 47.1
CiPaw.07G120300 Carya illinoinensis HOM05D000324 ORTHO05D001014 1.7e-12 76.3 88 46.6
Potri.002G192400 Populus trichocarpa HOM05D000324 ORTHO05D001014 1.7e-12 76.3 95 43.2
Duzib133G1293 Durio zibethinus HOM05D000324 ORTHO05D001014 2.2e-12 75.9 88 47.7
Glyma.03G221350 Glycine max HOM05D000324 ORTHO05D001014 2.2e-12 75.9 88 48.9
Glyma.19G218300 Glycine max HOM05D000324 ORTHO05D001014 2.2e-12 75.9 88 48.9
Solyc01g079240.3 Solanum lycopersicum HOM05D000324 ORTHO05D001014 2.2e-12 75.9 87 50.6
Sopen01g031020 Solanum pennellii HOM05D000324 ORTHO05D001014 2.2e-12 75.9 87 50.6
PGSC0003DMG400009052 Solanum tuberosum HOM05D000324 ORTHO05D001014 2.2e-12 75.9 87 50.6
Ah.11g049070 Amaranthus hybridus HOM05D000324 ORTHO05D001014 2.9e-12 75.5 88 50.0
COL.COLO4_23191 Corchorus olitorius HOM05D000324 ORTHO05D001014 2.9e-12 75.5 71 49.3
Nitab4.5_0000222g0130 Nicotiana tabacum HOM05D000324 ORTHO05D001014 2.9e-12 75.5 70 52.9
Nitab4.5_0007983g0020 Nicotiana tabacum HOM05D000324 ORTHO05D001014 2.9e-12 75.5 70 52.9
Aqoxy2G02655 Aquilegia oxysepala HOM05D000324 ORTHO05D001014 3.7e-12 75.1 95 42.1
Duzib138G1390 Durio zibethinus HOM05D000324 ORTHO05D001014 3.7e-12 75.1 88 45.5
Lj1g0003240 Lotus japonicus HOM05D000324 ORTHO05D001014 4.9e-12 74.7 88 48.9
Rhsim13G0002500 Rhododendron simsii HOM05D000324 ORTHO05D001014 4.9e-12 74.7 94 45.7
VMungo0720G1147 Vigna mungo HOM05D000324 ORTHO05D001014 4.9e-12 74.7 95 44.2
FAN23G2798 Fragaria x ananassa HOM05D000324 ORTHO05D001014 6.4e-12 74.3 85 41.2
FAN28G0455 Fragaria x ananassa HOM05D000324 ORTHO05D001014 6.4e-12 74.3 85 41.2
BcaB02g08790 Brassica carinata HOM05D000324 ORTHO05D001014 8.3e-12 73.9 188 29.8
ClCG10G011610 Citrullus lanatus HOM05D000324 ORTHO05D001014 8.3e-12 73.9 83 43.4
Psat3g018960 Pisum sativum HOM05D000324 ORTHO05D001014 8.3e-12 73.9 88 47.7
RcHm_v2.0_Chr3g0487091 Rosa chinensis HOM05D000324 ORTHO05D001014 8.3e-12 73.9 89 42.7
Manes.05G012700 Manihot esculenta HOM05D000324 ORTHO05D001014 1.1e-11 73.6 95 43.2
Nn4g25522 Nelumbo nucifera HOM05D000324 ORTHO05D001014 1.1e-11 73.6 87 44.8
RcHm_v2.0_Chr3g0487031 Rosa chinensis HOM05D000324 ORTHO05D001014 1.1e-11 73.6 95 38.9
Cc02_g15850 Coffea canephora HOM05D000324 ORTHO05D001014 1.4e-11 73.2 94 46.8
AT2G47240 Arabidopsis thaliana HOM05D000324 ORTHO05D001014 1.9e-11 72.8 89 43.8
FvH4_1g26850 Fragaria vesca HOM05D000324 ORTHO05D001014 1.9e-11 72.8 87 43.7
Glyma.10G010800 Glycine max HOM05D000324 ORTHO05D001014 1.9e-11 72.8 95 43.2
BcaC02g12581 Brassica carinata HOM05D000324 ORTHO05D001014 2.4e-11 72.4 89 43.8
A05p00600 Brassica napus HOM05D000324 ORTHO05D001014 2.4e-11 72.4 89 43.8
C04p00650 Brassica napus HOM05D000324 ORTHO05D001014 2.4e-11 72.4 89 43.8
BolC4t21698H Brassica oleracea HOM05D000324 ORTHO05D001014 2.4e-11 72.4 89 43.8
BraA05t19057Z Brassica rapa HOM05D000324 ORTHO05D001014 2.4e-11 72.4 89 43.8
Phvul.007G212500 Phaseolus vulgaris HOM05D000324 ORTHO05D001014 2.4e-11 72.4 95 42.1
TAR365G0793 Trochodendron aralioides HOM05D000324 ORTHO05D001014 2.4e-11 72.4 88 45.5
Ah.02g112540 Amaranthus hybridus HOM05D000324 ORTHO05D001014 3.2e-11 72.0 95 42.1
Glyma.02G010300 Glycine max HOM05D000324 ORTHO05D001014 3.2e-11 72.0 95 43.2
GSVIVG01028155001 Vitis vinifera HOM05D000324 ORTHO05D001014 3.2e-11 72.0 88 44.3
CiPaw.08G087000 Carya illinoinensis HOM05D000324 ORTHO05D001014 4.1e-11 71.6 95 41.1
Eucgr.H00914 Eucalyptus grandis HOM05D000324 ORTHO05D001014 4.1e-11 71.6 88 46.6
Medtr7g109830 Medicago truncatula HOM05D000324 ORTHO05D001014 4.1e-11 71.6 88 46.6
BcaB06g29456 Brassica carinata HOM05D000324 ORTHO05D001014 5.4e-11 71.2 89 42.7
CARHR142630 Cardamine hirsuta HOM05D000324 ORTHO05D001014 5.4e-11 71.2 105 40.0
TPR.G31747 Trifolium pratense HOM05D000324 ORTHO05D001014 5.4e-11 71.2 95 43.2
BcaC01g05041 Brassica carinata HOM05D000324 ORTHO05D001014 7.0e-11 70.9 89 42.7
BolC3t15437H Brassica oleracea HOM05D000324 ORTHO05D001014 7.0e-11 70.9 89 42.7
Thhalv10001346m.g Eutrema salsugineum HOM05D000324 ORTHO05D001014 7.0e-11 70.9 89 42.7
Lj1g0012059 Lotus japonicus HOM05D000324 ORTHO05D001014 7.0e-11 70.9 95 46.3
AL4G46790 Arabidopsis lyrata HOM05D000324 ORTHO05D001014 9.2e-11 70.5 89 41.6
A04p34870 Brassica napus HOM05D000324 ORTHO05D001014 9.2e-11 70.5 89 41.6
BraSC79t46678Z Brassica rapa HOM05D000324 ORTHO05D001014 9.2e-11 70.5 89 41.6
CANSAT25G2749 Cannabis sativa HOM05D000324 ORTHO05D001014 9.2e-11 70.5 88 44.3
Carub.0004s2997 Capsella rubella HOM05D000324 ORTHO05D001014 9.2e-11 70.5 89 41.6
FvH4_1g26810 Fragaria vesca HOM05D000324 ORTHO05D001014 9.2e-11 70.5 95 36.8
QL12p018895 Quercus lobata HOM05D000324 ORTHO05D001014 9.2e-11 70.5 95 41.1
CDE08G1234 Ceratophyllum demersum HOM05D000324 ORTHO05D001014 1.2e-10 70.1 88 43.2
Thhalv10001739m.g Eutrema salsugineum HOM05D000324 ORTHO05D001014 1.2e-10 70.1 89 40.4
Psat6g160800 Pisum sativum HOM05D000324 ORTHO05D001014 1.2e-10 70.1 95 42.1
Sed0017459 Sechium edule HOM05D000324 ORTHO05D001014 1.2e-10 70.1 95 42.1
CDE02G2413 Ceratophyllum demersum HOM05D000324 ORTHO05D001014 1.6e-10 69.7 88 43.2
Sp4g29210 Schrenkiella parvula HOM05D000324 ORTHO05D001014 1.6e-10 69.7 88 43.2
Dinv10127 Davidia involucrata HOM05D000324 ORTHO05D001014 2.7e-10 68.9 125 37.6
BcaC02g06966 Brassica carinata HOM05D000324 ORTHO05D001014 4.6e-10 68.2 89 41.6
C04p72640 Brassica napus HOM05D000324 ORTHO05D001014 4.6e-10 68.2 89 41.6
BolC4t28752H Brassica oleracea HOM05D000324 ORTHO05D001014 4.6e-10 68.2 89 41.6
FAN19G1546 Fragaria x ananassa HOM05D000324 ORTHO05D001014 4.6e-10 68.2 101 34.7
AL4G46800 Arabidopsis lyrata HOM05D000324 ORTHO05D001014 7.8e-10 67.4 105 37.1
PSO170G2961 Papaver somniferum HOM05D000324 ORTHO05D001014 1.0e-09 67.0 87 44.8
Aa31LG1G28540 Aethionema arabicum HOM05D000324 ORTHO05D001014 1.7e-09 66.2 89 40.4
BcaB02g08789 Brassica carinata HOM05D000324 ORTHO05D001014 1.7e-09 66.2 105 36.2
HPP92_002657 Vanilla planifolia HOM05D000324 ORTHO05D001014 1.7e-09 66.2 95 38.9
Carub.0004s2999 Capsella rubella HOM05D000324 ORTHO05D001014 2.3e-09 65.9 105 36.2
C04p00640 Brassica napus HOM05D000324 ORTHO05D001014 3.0e-09 65.5 105 36.2
HPP92_027926 Vanilla planifolia HOM05D000324 ORTHO05D001014 5.0e-09 64.7 88 42.0
ATR0693G028 Amborella trichopoda HOM05D000324 ORTHO05D001014 8.6e-09 63.9 88 39.8
PSO357G0520 Papaver somniferum HOM05D000324 ORTHO05D001014 8.6e-09 63.9 87 42.5
Zm00001eb417150 Zea mays HOM05D000324 ORTHO05D001014 1.1e-08 63.5 88 38.6
BcaB02g08788 Brassica carinata HOM05D000324 ORTHO05D001014 1.5e-08 63.2 116 33.6
BolC4t21697H Brassica oleracea HOM05D000324 ORTHO05D001014 1.5e-08 63.2 116 33.6
arahy.Tifrunner.gnm1.ann1.I7Z8ND Arachis hypogaea HOM05D000324 ORTHO05D001014 3.3e-08 62.0 197 29.4
Os05g0132100 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D001014 7.3e-08 60.8 88 39.8
HPP92_002709 Vanilla planifolia HOM05D000324 ORTHO05D001014 7.3e-08 60.8 87 40.2
ATR0693G050 Amborella trichopoda HOM05D000324 ORTHO05D001014 4.0e-06 55.1 79 39.2
Oeu008486.1 Olea europaea HOM05D000324 ORTHO05D001543 8.9e-06 53.9 64 48.4


User provided reference genes

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