Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 7.7e-71 270.4 139 100.0
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 6.8e-27 124.4 80 76.2
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.5e-23 112.1 80 77.5
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 6.0e-23 111.3 80 77.5
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 5.8e-18 94.7 80 63.8
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 5.8e-18 94.7 80 63.8
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 7.6e-18 94.4 80 63.8
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.7e-17 93.2 75 65.3
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 2.2e-17 92.8 81 64.2
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 3.8e-17 92.0 80 63.8
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.1e-16 90.5 75 69.3
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 3.2e-16 89.0 82 62.2
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 9.3e-16 87.4 81 61.7
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.2e-15 87.0 80 61.2
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 2.1e-15 86.3 77 61.0
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.7e-15 85.9 77 59.7
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 2.7e-15 85.9 78 60.3
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 4.6e-15 85.1 81 61.7
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 6.0e-15 84.7 81 61.7
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 2.3e-14 82.8 80 57.5
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 2.3e-14 82.8 80 56.2
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 3.0e-14 82.4 80 57.5
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 3.9e-14 82.0 80 56.2
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 3.9e-14 82.0 80 60.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 5.1e-14 81.6 80 53.8
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.6e-14 81.3 97 53.6
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 6.6e-14 81.3 81 55.6
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 6.6e-14 81.3 80 61.2
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 6.6e-14 81.3 85 55.3
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 8.7e-14 80.9 80 60.0
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 8.7e-14 80.9 80 56.2
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.7e-14 80.9 80 56.2
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.7e-14 80.9 80 56.2
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-13 80.5 80 56.2
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-13 80.5 80 56.2
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.9e-13 79.7 80 58.8
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.9e-13 79.7 80 56.2
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.9e-13 79.7 80 53.8
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.5e-13 79.3 80 60.0
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.5e-13 79.3 80 60.0
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 2.5e-13 79.3 81 58.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.5e-13 79.3 118 42.4
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.3e-13 79.0 80 57.5
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 3.3e-13 79.0 80 60.0
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.3e-13 79.0 80 55.0
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.3e-13 78.6 80 57.5
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 4.3e-13 78.6 83 56.6
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 5.6e-13 78.2 81 56.8
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 7.3e-13 77.8 79 58.2
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 7.3e-13 77.8 79 57.0
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.3e-13 77.8 82 58.5
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.3e-13 77.8 82 58.5
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 9.6e-13 77.4 80 58.8
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.3e-12 77.0 80 55.0
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.3e-12 77.0 80 55.0
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.3e-12 77.0 85 51.8
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.6e-12 76.6 79 50.6
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.6e-12 76.6 80 58.8
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.1e-12 76.3 80 56.2
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.8e-12 75.9 80 58.8
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.8e-12 75.9 85 52.9
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.6e-12 75.5 80 55.0
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 3.6e-12 75.5 80 53.8
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 4.8e-12 75.1 80 56.2
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 4.8e-12 75.1 82 53.7
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 6.2e-12 74.7 83 55.4
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 6.2e-12 74.7 77 53.2
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 8.1e-12 74.3 93 50.5
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.1e-11 73.9 89 50.6
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.4e-11 73.6 100 50.0
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 1.8e-11 73.2 79 55.7
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.8e-11 73.2 85 51.8
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.4e-11 72.8 80 52.5
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 3.1e-11 72.4 80 47.5
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 4.0e-11 72.0 83 51.8
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.0e-11 72.0 89 50.6
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 5.3e-11 71.6 89 49.4
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 6.9e-11 71.2 80 50.0
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 6.9e-11 71.2 80 51.2
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 6.9e-11 71.2 87 52.9
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 9.0e-11 70.9 84 50.0
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.2e-10 70.5 82 54.9
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.2e-10 70.5 79 51.9
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 1.5e-10 70.1 82 50.0
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.5e-10 70.1 80 48.8
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.5e-10 70.1 80 51.2
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 2.0e-10 69.7 74 54.1
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 2.0e-10 69.7 74 54.1
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 2.0e-10 69.7 80 52.5
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.6e-10 69.3 81 51.9
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.6e-10 69.3 80 50.0
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.6e-10 69.3 88 51.1
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.6e-10 69.3 81 51.9
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.4e-10 68.9 80 53.8
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 3.4e-10 68.9 84 53.6
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 4.4e-10 68.6 79 49.4
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.4e-10 68.6 79 50.6
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 4.4e-10 68.6 82 46.3
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 9.9e-10 67.4 80 48.8
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 9.9e-10 67.4 76 50.0
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 9.9e-10 67.4 80 48.8
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 9.9e-10 67.4 80 51.2
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 9.9e-10 67.4 80 48.8
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 9.9e-10 67.4 79 54.4
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.3e-09 67.0 81 50.6
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.3e-09 67.0 86 45.3
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.3e-09 67.0 84 50.0
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.7e-09 66.6 82 48.8
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.7e-09 66.6 84 52.4
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 2.2e-09 66.2 80 47.5
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 2.2e-09 66.2 80 50.0
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.2e-09 66.2 80 52.5
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 2.9e-09 65.9 83 53.0
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 3.8e-09 65.5 79 46.8
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.8e-09 65.5 74 48.6
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 4.9e-09 65.1 80 47.5
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 4.9e-09 65.1 79 45.6
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 4.9e-09 65.1 80 45.0
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 4.9e-09 65.1 82 50.0
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 6.4e-09 64.7 83 48.2
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 8.4e-09 64.3 83 45.8
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 8.4e-09 64.3 78 50.0
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 8.4e-09 64.3 76 48.7
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.1e-08 63.9 80 45.0
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.1e-08 63.9 74 48.6
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 1.1e-08 63.9 86 46.5
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.4e-08 63.5 84 50.0
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.4e-08 63.5 76 50.0
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.9e-08 63.2 74 50.0
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.9e-08 63.2 83 45.8
SalBow6G1847 Salvia bowleyana HOM05D039222 ORTHO05D004480 1.9e-08 63.2 52 73.1
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 3.2e-08 62.4 76 48.7
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 3.2e-08 62.4 74 50.0
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.2e-08 62.4 80 47.5
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 4.2e-08 62.0 76 48.7
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 5.4e-08 61.6 75 52.0
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 5.4e-08 61.6 84 47.6
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 7.1e-08 61.2 75 49.3
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 7.1e-08 61.2 81 48.1
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 9.3e-08 60.8 77 48.1
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 9.3e-08 60.8 74 48.6
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 9.3e-08 60.8 77 48.1
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.2e-07 60.5 81 44.4
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-07 60.5 83 44.6
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.2e-07 60.5 77 44.2
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 1.2e-07 60.5 56 64.3
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.1e-07 59.7 84 44.0
SalBow6G5832 Salvia bowleyana HOM05D039222 ORTHO05D004480 2.1e-07 59.7 52 71.2
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.7e-07 59.3 77 50.6
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 3.5e-07 58.9 76 47.4
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 3.5e-07 58.9 83 50.6
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 6.0e-07 58.2 76 47.4
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 7.9e-07 57.8 76 47.4
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 7.9e-07 57.8 96 42.7
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.0e-06 57.4 84 42.9
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-06 57.4 84 42.9
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.0e-06 57.4 82 45.1
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.0e-06 57.4 96 42.7
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.3e-06 57.0 87 44.8
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 3.0e-06 55.8 79 46.8
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.0e-06 55.8 85 43.5
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.6e-06 54.7 84 41.7
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 6.6e-06 54.7 87 41.4
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 8.7e-06 54.3 78 44.9


User provided reference genes

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