Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G29003 Striga asiatica HOM05D003816 ORTHO05D004410 3.6e-158 561.6 297 100.0
SGA_v2.0_scaffold173G39120 Striga asiatica HOM05D003816 ORTHO05D004410 4.0e-40 169.5 226 46.9
Migut.A00701 Erythranthe guttata HOM05D003816 ORTHO05D004410 7.0e-37 158.7 212 46.2
MSTRG.11945 Avicennia marina HOM05D003816 ORTHO05D004410 4.4e-31 139.4 200 42.5
PGSC0003DMG401012173 Solanum tuberosum HOM05D003816 ORTHO05D004410 4.8e-30 136.0 201 41.3
Peaxi162Scf00074g01527 Petunia axillaris HOM05D003816 ORTHO05D004410 1.1e-29 134.8 201 40.8
Sopen08g030050 Solanum pennellii HOM05D003816 ORTHO05D004410 1.4e-29 134.4 201 40.3
Solyc08g081750.3 Solanum lycopersicum HOM05D003816 ORTHO05D004410 3.1e-29 133.3 201 40.3
Oeu008845.1 Olea europaea HOM05D003816 ORTHO05D004410 5.4e-29 132.5 205 39.5
Nitab4.5_0000966g0010 Nicotiana tabacum HOM05D003816 ORTHO05D004410 1.6e-28 131.0 201 40.8
PGR031G1220 Punica granatum HOM05D003816 ORTHO05D004410 4.5e-28 129.4 199 38.2
Cc08_g15460 Coffea canephora HOM05D003816 ORTHO05D004410 1.0e-27 128.3 228 38.6
CAN.G532.69 Capsicum annuum HOM05D003816 ORTHO05D004410 3.8e-27 126.3 201 39.8
Ciclev10020944m.g Citrus clementina HOM05D003816 ORTHO05D004410 5.0e-27 125.9 204 38.7
GSVIVG01019444001 Vitis vinifera HOM05D003816 ORTHO05D004410 5.0e-27 125.9 200 39.5
vmacro13989 Vaccinium macrocarpon HOM05D003816 ORTHO05D004410 4.2e-26 122.9 201 37.8
Manes.01G051000 Manihot esculenta HOM05D003816 ORTHO05D004410 9.5e-26 121.7 201 38.8
Gohir.D08G133800 Gossypium hirsutum HOM05D003816 ORTHO05D004410 4.7e-25 119.4 200 37.0
Gorai.004G136900 Gossypium raimondii HOM05D003816 ORTHO05D004410 4.7e-25 119.4 200 37.0
Manes.02G015300 Manihot esculenta HOM05D003816 ORTHO05D004410 4.7e-25 119.4 201 37.8
unitig_88.g27629 Utricularia gibba HOM05D003816 ORTHO05D004410 4.7e-25 119.4 200 36.5
Sc07g0009900 Simmondsia chinensis HOM05D003816 ORTHO05D004410 8.0e-25 118.6 200 37.5
Rhsim07G0086200 Rhododendron simsii HOM05D000059 ORTHO05D000128 1.0e-24 118.2 201 38.3
Gohir.A08G113000 Gossypium hirsutum HOM05D003816 ORTHO05D004410 1.4e-24 117.9 200 36.5
Cfa012263 Carpinus fangiana HOM05D000154 ORTHO05D004410 2.3e-24 117.1 211 37.0
AUR62010771 Chenopodium quinoa HOM05D003816 ORTHO05D004410 4.0e-24 116.3 210 35.2
Hund14255 Selenicereus undatus HOM05D003816 ORTHO05D004410 4.0e-24 116.3 200 35.5
CiPaw.12G087600 Carya illinoinensis HOM05D003816 ORTHO05D004410 5.2e-24 115.9 200 37.0
CSS0006908 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 6.8e-24 115.5 205 36.6
CSS0019424 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 6.8e-24 115.5 205 36.6
unitig_0.g2849 Utricularia gibba HOM05D003816 ORTHO05D004410 6.8e-24 115.5 211 36.0
Thecc.03G288800 Theobroma cacao HOM05D003816 ORTHO05D004410 1.5e-23 114.4 200 36.0
Actinidia22704 Actinidia chinensis HOM05D000059 ORTHO05D004410 2.0e-23 114.0 200 37.0
CSS0012674 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 2.0e-23 114.0 211 35.1
CSS0031532 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 2.0e-23 114.0 212 35.8
AUR62019773 Chenopodium quinoa HOM05D003816 ORTHO05D004410 2.0e-23 114.0 204 35.3
QL02p032669 Quercus lobata HOM05D003816 ORTHO05D004410 3.4e-23 113.2 210 36.2
Gohir.A11G023400 Gossypium hirsutum HOM05D003816 ORTHO05D004410 4.4e-23 112.8 200 35.0
COL.COLO4_08337 Corchorus olitorius HOM05D000059 ORTHO05D004410 1.3e-22 111.3 205 34.6
Eucgr.A02683 Eucalyptus grandis HOM05D003816 ORTHO05D004410 2.8e-22 110.2 203 35.5
Gohir.D11G023100 Gossypium hirsutum HOM05D003816 ORTHO05D004410 2.8e-22 110.2 200 34.5
Potri.003G133800 Populus trichocarpa HOM05D003816 ORTHO05D004410 2.8e-22 110.2 204 35.8
EL10Ac5g12851 Beta vulgaris HOM05D003816 ORTHO05D004410 3.7e-22 109.8 204 37.7
BcaC03g13940 Brassica carinata HOM05D003816 ORTHO05D004410 3.7e-22 109.8 200 37.5
BolC2t07223H Brassica oleracea HOM05D003816 ORTHO05D004410 3.7e-22 109.8 200 37.5
Gohir.D03G079700 Gossypium hirsutum HOM05D003816 ORTHO05D004410 3.7e-22 109.8 211 34.1
Gorai.003G084200 Gossypium raimondii HOM05D003816 ORTHO05D004410 3.7e-22 109.8 211 34.1
Gorai.007G024900 Gossypium raimondii HOM05D003816 ORTHO05D004410 3.7e-22 109.8 200 34.5
Lalb_Chr05g0224371 Lupinus albus HOM05D003816 ORTHO05D004410 3.7e-22 109.8 206 35.0
Nn1g04065 Nelumbo nucifera HOM05D003816 ORTHO05D004410 3.7e-22 109.8 202 35.1
BNapus_Darmor_BZH_scaffold_38p00150 Brassica napus HOM05D003816 ORTHO05D004410 4.9e-22 109.4 221 35.7
RcHm_v2.0_Chr7g0196131 Rosa chinensis HOM05D003816 ORTHO05D004410 4.9e-22 109.4 205 36.6
Atru.chr9.2089 Acer truncatum HOM05D003816 ORTHO05D004410 6.3e-22 109.0 211 37.0
Gohir.A02G104000 Gossypium hirsutum HOM05D003816 ORTHO05D004410 6.3e-22 109.0 200 34.0
Oeu063040.1 Olea europaea HOM05D003816 ORTHO05D004410 6.3e-22 109.0 227 36.1
BraA02t05706Z Brassica rapa HOM05D003816 ORTHO05D004410 8.3e-22 108.6 200 37.0
Cpa.g.sc122.12 Carica papaya HOM05D003816 ORTHO05D004410 1.1e-21 108.2 205 35.1
Duzib068G1263 Durio zibethinus HOM05D003816 ORTHO05D004410 1.1e-21 108.2 204 34.8
BcaB05g22667 Brassica carinata HOM05D003816 ORTHO05D004410 1.4e-21 107.8 200 37.5
Duzib205G1652 Durio zibethinus HOM05D003816 ORTHO05D004410 1.4e-21 107.8 200 35.5
Eucgr.D01795 Eucalyptus grandis HOM05D003816 ORTHO05D004410 1.4e-21 107.8 199 36.2
Sabra01G0073000 Salix brachista HOM05D000147 ORTHO05D002016 1.4e-21 107.8 204 36.3
TWI15G0065 Tripterygium wilfordii HOM05D003816 ORTHO05D004410 1.8e-21 107.5 205 36.6
TAR375G0902 Trochodendron aralioides HOM05D003816 ORTHO05D004410 1.8e-21 107.5 204 36.8
Dinv35291 Davidia involucrata HOM05D000662 ORTHO05D004410 2.4e-21 107.1 202 35.6
CSS0016588 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 3.2e-21 106.7 186 38.7
FvH4_5g03580 Fragaria vesca HOM05D003816 ORTHO05D004410 3.2e-21 106.7 205 36.1
FAN04G2543 Fragaria x ananassa HOM05D003816 ORTHO05D004410 3.2e-21 106.7 205 36.1
FAN08G3004 Fragaria x ananassa HOM05D003816 ORTHO05D004410 4.1e-21 106.3 205 36.1
FAN13G2496 Fragaria x ananassa HOM05D003816 ORTHO05D004410 4.1e-21 106.3 205 35.1
Dinv28361 Davidia involucrata HOM05D003816 ORTHO05D004410 5.4e-21 105.9 202 36.1
Sabra03G0096100 Salix brachista HOM05D003816 ORTHO05D004410 5.4e-21 105.9 206 35.0
Potri.001G097500 Populus trichocarpa HOM05D003816 ORTHO05D004410 7.0e-21 105.5 204 35.8
FAN04G0729 Fragaria x ananassa HOM05D003816 ORTHO05D004410 9.2e-21 105.1 205 35.6
CARHR274430 Cardamine hirsuta HOM05D003816 ORTHO05D004410 2.0e-20 104.0 225 36.4
CiPaw.11G127500 Carya illinoinensis HOM05D003816 ORTHO05D004410 2.0e-20 104.0 200 35.5
PGR042G2117 Punica granatum HOM05D003816 ORTHO05D004410 2.0e-20 104.0 204 35.3
Phvul.002G294300 Phaseolus vulgaris HOM05D003816 ORTHO05D004410 3.5e-20 103.2 198 34.3
Thhalv10013994m.g Eutrema salsugineum HOM05D003816 ORTHO05D004410 4.5e-20 102.8 200 36.0
VMungo0251G3347 Vigna mungo HOM05D003816 ORTHO05D004410 4.5e-20 102.8 198 34.3
MD06G1095700 Malus domestica HOM05D003816 ORTHO05D004410 1.0e-19 101.7 203 36.0
C02p11490 Brassica napus HOM05D003816 ORTHO05D004410 1.7e-19 100.9 200 36.5
Carub.0008s2143 Capsella rubella HOM05D003816 ORTHO05D004410 2.3e-19 100.5 205 34.1
ClCG01G000780 Citrullus lanatus HOM05D003816 ORTHO05D004410 2.3e-19 100.5 212 33.5
Lalb_Chr09g0332761 Lupinus albus HOM05D003816 ORTHO05D004410 2.3e-19 100.5 217 33.2
Sp6g22330 Schrenkiella parvula HOM05D003816 ORTHO05D004410 2.3e-19 100.5 226 35.0
AT5G60750 Arabidopsis thaliana HOM05D003816 ORTHO05D004410 2.9e-19 100.1 205 34.1
MD14G1115700 Malus domestica HOM05D003816 ORTHO05D004410 2.9e-19 100.1 200 34.5
AL8G37340 Arabidopsis lyrata HOM05D003816 ORTHO05D004410 3.9e-19 99.8 205 34.1
Atru.chr1.320 Acer truncatum HOM05D003816 ORTHO05D004410 6.6e-19 99.0 224 33.5
TAR629G2639 Trochodendron aralioides HOM05D003816 ORTHO05D004410 6.6e-19 99.0 227 33.5
Ca_29631_v3 Cicer arietinum L. HOM05D003816 ORTHO05D004410 8.6e-19 98.6 212 35.4
Sed0000969 Sechium edule HOM05D003816 ORTHO05D004410 8.6e-19 98.6 204 33.8
THA.LOC104809356 Tarenaya hassleriana HOM05D003816 ORTHO05D004410 8.6e-19 98.6 215 35.8
PSO135G0392 Papaver somniferum HOM05D003816 ORTHO05D004410 1.5e-18 97.8 206 32.5
PSO384G0096 Papaver somniferum HOM05D003816 ORTHO05D004410 1.5e-18 97.8 206 32.5
Cfa016328 Carpinus fangiana HOM05D003816 ORTHO05D004410 1.9e-18 97.4 212 34.0
CsaV3_5G000910 Cucumis sativus L. HOM05D003816 ORTHO05D004410 1.9e-18 97.4 201 33.3
DCAR_008524 Daucus carota HOM05D003816 ORTHO05D004410 1.9e-18 97.4 203 33.5
Glyma.08G019500 Glycine max HOM05D003816 ORTHO05D004410 2.5e-18 97.1 197 33.5
vmacro06596 Vaccinium macrocarpon HOM05D003816 ORTHO05D004410 3.3e-18 96.7 198 32.8
Actinidia08605 Actinidia chinensis HOM05D003816 ORTHO05D004410 4.3e-18 96.3 205 33.2
arahy.Tifrunner.gnm1.ann1.8C5G5Z Arachis hypogaea HOM05D003816 ORTHO05D004410 5.6e-18 95.9 200 35.0
arahy.Tifrunner.gnm1.ann1.E6YVBJ Arachis hypogaea HOM05D003816 ORTHO05D004410 5.6e-18 95.9 211 33.6
DCAR_020292 Daucus carota HOM05D003816 ORTHO05D004410 5.6e-18 95.9 211 31.8
TPR.G3391 Trifolium pratense HOM05D003816 ORTHO05D004410 5.6e-18 95.9 201 35.8
Glyma.05G213000 Glycine max HOM05D003816 ORTHO05D004410 7.3e-18 95.5 197 33.5
Lsat_1_v5_gn_8_6220 Lactuca sativa HOM05D003816 ORTHO05D004410 9.5e-18 95.1 199 32.2
Aa31LG1G12710 Aethionema arabicum HOM05D003816 ORTHO05D004410 1.2e-17 94.7 227 33.0
Actinidia27352 Actinidia chinensis HOM05D003816 ORTHO05D004410 1.6e-17 94.4 219 32.4
Haze_00080 Corylus avellana HOM05D003816 ORTHO05D004410 2.1e-17 94.0 232 31.5
Medtr8g099085 Medicago truncatula HOM05D003816 ORTHO05D004410 4.7e-17 92.8 201 34.8
HanXRQChr05g0144401 Helianthus annuus HOM05D003816 ORTHO05D004410 1.4e-16 91.3 201 30.8
Prupe.5G110300 Prunus persica HOM05D003816 ORTHO05D004410 1.8e-16 90.9 201 35.3
Lj4g0017897 Lotus japonicus HOM05D003816 ORTHO05D004410 2.3e-16 90.5 200 34.5
MELO3C005852.2 Cucumis melo HOM05D003816 ORTHO05D004410 3.1e-16 90.1 229 31.4
MBI06_g33549_MAGBIO Magnolia biondii HOM05D003816 ORTHO05D004410 3.1e-16 90.1 231 30.3
Lj5g0016706 Lotus japonicus HOM05D003816 ORTHO05D004410 6.8e-16 89.0 210 31.9
ECA233G6188 Erigeron canadensis HOM05D003816 ORTHO05D004410 8.9e-16 88.6 206 30.6
Ah.12g052090 Amaranthus hybridus HOM05D003816 ORTHO05D004410 1.2e-15 88.2 199 34.2
Sed0004130 Sechium edule HOM05D003816 ORTHO05D004410 1.2e-15 88.2 215 31.2
Aqoxy7G02903 Aquilegia oxysepala HOM05D003816 ORTHO05D004410 4.4e-15 86.3 203 30.5
HanXRQChr14g0462661 Helianthus annuus HOM05D003816 ORTHO05D004410 7.5e-15 85.5 202 34.2
VMungo0720G2481 Vigna mungo HOM05D003816 ORTHO05D004410 1.7e-14 84.3 206 30.6
CANSAT21G2538 Cannabis sativa HOM05D003816 ORTHO05D004410 2.2e-14 84.0 216 31.5
Haze_08729 Corylus avellana HOM05D003816 ORTHO05D004410 2.9e-14 83.6 162 35.8
Phvul.007G077200 Phaseolus vulgaris HOM05D003816 ORTHO05D004410 2.9e-14 83.6 201 31.3
SHI07095 Sapria himalayana HOM05D003816 ORTHO05D004410 4.9e-14 82.8 162 35.2
Lj2P175T52 Lonicera japonica HOM05D003816 ORTHO05D004410 6.4e-14 82.4 168 34.5
Lsat_1_v5_gn_2_133601 Lactuca sativa HOM05D003816 ORTHO05D004410 1.1e-13 81.6 202 30.2
Rhsim03G0196400 Rhododendron simsii HOM05D003816 ORTHO05D004410 1.1e-13 81.6 229 28.8
Lalb_Chr21g0305321 Lupinus albus HOM05D003816 ORTHO05D004410 4.1e-13 79.7 203 31.0
Dinv07571 Davidia involucrata HOM05D003816 ORTHO05D004410 7.0e-13 79.0 199 33.2
Nitab4.5_0007898g0030 Nicotiana tabacum HOM05D003816 ORTHO05D004410 9.2e-13 78.6 45 77.8
HPP92_003943 Vanilla planifolia HOM05D003816 ORTHO05D004410 1.2e-12 78.2 206 29.6
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 1.6e-12 77.8 208 31.2
Ca_10703_v3 Cicer arietinum L. HOM05D003816 ORTHO05D004410 7.8e-12 75.5 205 29.8
Dinv37574 Davidia involucrata HOM05D003816 ORTHO05D004410 1.0e-11 75.1 45 75.6
Glyma.20G164100 Glycine max HOM05D003816 ORTHO05D004410 1.0e-11 75.1 201 29.9
Oeu008846.1 Olea europaea HOM05D003816 ORTHO05D004410 1.7e-11 74.3 45 73.3
DCAR_006850 Daucus carota HOM05D003816 ORTHO05D004410 2.3e-11 73.9 181 33.1
Ca_10960_v3 Cicer arietinum L. HOM05D003816 ORTHO05D004410 3.0e-11 73.6 46 71.7
Medtr1g099420 Medicago truncatula HOM05D003816 ORTHO05D004410 3.0e-11 73.6 218 25.7
Psat7g029000 Pisum sativum HOM05D003816 ORTHO05D004410 3.0e-11 73.6 46 71.7
Psat0s694g0040 Pisum sativum HOM05D003816 ORTHO05D004410 6.6e-11 72.4 202 29.2
Actinidia34174 Actinidia chinensis HOM05D003816 ORTHO05D004410 1.1e-10 71.6 150 32.7
Nn1g01737 Nelumbo nucifera HOM05D003816 ORTHO05D004410 1.5e-10 71.2 45 71.1
Glyma.10G229000 Glycine max HOM05D003816 ORTHO05D004410 1.9e-10 70.9 200 28.0
Lj3P915T21 Lonicera japonica HOM05D003816 ORTHO05D004410 1.9e-10 70.9 46 67.4
QL09p012028 Quercus lobata HOM05D003816 ORTHO05D004410 4.3e-10 69.7 45 71.1
TPR.G7761 Trifolium pratense HOM05D003816 ORTHO05D004410 7.3e-10 68.9 211 27.0
MSTRG.1834 Avicennia marina HOM05D003816 ORTHO05D004410 2.1e-09 67.4 46 63.0
Cc02_g02150 Coffea canephora HOM05D003816 ORTHO05D004410 4.7e-09 66.2 152 31.6
Manes.01G051301 Manihot esculenta HOM05D003816 ORTHO05D004410 1.8e-08 64.3 38 73.7
ATR0749G058 Amborella trichopoda HOM05D003816 ORTHO05D004410 3.1e-08 63.5 140 33.6
ATR0749G066 Amborella trichopoda HOM05D003816 ORTHO05D004410 7.5e-07 58.9 46 63.0
AagrBONN_evm.TU.Sc2ySwM_228.1353 Anthoceros agrestis HOM05D003816 ORTHO05D004410 1.3e-06 58.2 46 63.0
QL09p012023 Quercus lobata HOM05D003816 ORTHO05D004410 1.7e-06 57.8 79 43.0
Lalb_Chr02g0141351 Lupinus albus HOM05D003816 ORTHO05D004410 2.9e-06 57.0 47 57.4
Zm00001eb032160 Zea mays HOM05D003816 ORTHO05D004410 4.9e-06 56.2 46 54.3


User provided reference genes

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